Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb2

Orthogroup ID

OG0006198

Physical Location & Seq

Genomic Coordinates Forward (+)

18911918 .. 18913677

Gene Structure 1760 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_2g23060.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 720 bp

ATGTGGAACCGGAAAGGTGACGTGGAATCCGGATCAGCGCCGCTGTACCCCATGATGCTCGAGAGCCCCGAGCTCCGGTGGTCCTTTATCCGCAAAATCTACTCCATCATCGCCGTCCAGTTGCTAGCCACCATCGCCGTCGCCGCCGTCGTCGTCTCCTACCATCCCATCGCCAACTTCTTCGTCAGCACCGGCGCCGGCCTCGCTCTCTACATCGTCCTCATCATCACTCCCTTCATCGTGCTGTGTCCGCTGTACTATTACTACCAGAGGCATCCTGTCAATTTCATCTTGCTTGGGATTTTCACCATCTCTCTTGCCTTCGTCGTCGGATTGACTTGCGCTTTTACTAGCGGGAAGGTGATTTTGGAGTCTGCTATACTGACCGCTGTGGTTGTAATTGCTCTCACCCTGTACACTTTTTGGGCTGCAAGGAGAGGCCAGGATTTCAACTTTCTTGGTCCGTTCCTGTCCGGAGCATTGCTCGTTCTCATTGTGTTTGGTCTGATTCAGATTTTCTTCCCTCTGGGTAAGCTCTCTGTGATGATATACGGGTGCTTGGCATCAATCATCTTTTGTGGATACATTGTGTATGACACGGACAATCTCATCAAGCGCTACTCTTATGACGAGTACATTTGGGCTGCGGTTGCGTTGTATTTGGACATCATCAACCTGTTCCTTGCTTTGCTCACTATTTTTAGAGGTGCTGACAGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000902 GO:0006950 GO:0006952 GO:0007154 GO:0007165 GO:0008150 GO:0009605 GO:0009607 GO:0009620 GO:0009653 GO:0009719 GO:0009725 GO:0009741 GO:0009742 GO:0009755 GO:0009826 GO:0009987 GO:0010033 GO:0010941 GO:0014070 GO:0016043 GO:0016049 GO:0022603 GO:0023052 GO:0032502 GO:0032870 GO:0032989 GO:0033993 GO:0040007 GO:0042221 GO:0043207 GO:0043401 GO:0048519 GO:0048523 GO:0048545 GO:0048589 GO:0048856 GO:0048869 GO:0050789 GO:0050793 GO:0050794 GO:0050832 GO:0050896 GO:0051239 GO:0051704 GO:0051707 GO:0051716 GO:0060548 GO:0060560 GO:0065007 GO:0070887 GO:0071310 GO:0071367 GO:0071383 GO:0071396 GO:0071407 GO:0071495 GO:0071840 GO:0098542 GO:1901700 GO:1901701 GO:1905421 GO:2000026

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Bax1-I

Protein Analysis

240

Amino Acids

26.65

Weight (kDa)

7.62

Isoelectric Point (pI)

24.41

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Bax1-I	PF01027	28 - 234	8.3e-49	Inhibitor of apoptosis-promoting Bax1

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006198)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G03070 AT1G03070 AT1G03070 AT3G63310 AT4G02690 AT4G02690
fragaria_vesca	FvH4_2g23060 FvH4_2g24870
malus_domestica	MD03G1259200.v1.1 MD11G1279800.v1.1
prunus_persica	Prupe.8G235700_v2.0.a1
pyrus_communis	pycom03g20700 pycom11g24750
rosa_chinensis	RchiOBHm_Chr6g0290161 RchiOBHm_Chr6g0292711
rosa_laevigata	RLG00000011997 RLG00000012236
rosa_multiflora	Rmu_co8443445.1_g000001 Rmu_sc0002902.1_g000017
rosa_roxburghii	Rroxscaffold_7G00174750 Rroxscaffold_7G00177280
rosa_rugosa	Rorug06G0210500 Rorug06G0229200
rosa_samantha	Rh6BG349700 Rh6DG321200
rosa_wichuraiana	Rw6G027730 Rw6G029870

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	194
AccIII	TCCGGA	2 cut(s)	29, 473
AciI	CCGC	7 cut(s)	41, 91, 144, 251, 354, 387, 647
AclWI	GGATC	1 cut(s)	40
AcyI	GRCGYC	1 cut(s)	195
AfaI	GTAC	4 cut(s)	47, 257, 416, 635
AfeI	AGCGCT	1 cut(s)	617
AfiI	CCNNNNNNNGG	1 cut(s)	75
AgsI	TTSAA	1 cut(s)	451
AjiI	CACGTC	1 cut(s)	22
AjnI	CCWGG	1 cut(s)	441
AjuI	GAANNNNNNNTTGG	2 cut(s)	350, 382
AluBI	AGCT	2 cut(s)	73, 535
AluI	AGCT	2 cut(s)	73, 535
Alw21I	GWGCWC	1 cut(s)	75
Alw26I	GTCTC	1 cut(s)	160
AlwI	GGATC	1 cut(s)	40
Ama87I	CYCGRG	2 cut(s)	59, 68
Aor13HI	TCCGGA	2 cut(s)	29, 473
Aor51HI	AGCGCT	1 cut(s)	617
AoxI	GGCC	2 cut(s)	199, 439
ApeKI	GCWGC	2 cut(s)	428, 644
AspLEI	GCGC	4 cut(s)	40, 197, 344, 618
AspS9I	GGNCC	2 cut(s)	81, 461
AsuHPI	GGTGA	4 cut(s)	29, 298, 373, 400
AsuNHI	GCTAGC	1 cut(s)	124
AvaI	CYCGRG	2 cut(s)	59, 68
AvaII	GGWCC	2 cut(s)	81, 461
BanI	GGYRCC	1 cut(s)	194
BanII	GRGCYC	2 cut(s)	68, 75
Bbv12I	GWGCWC	1 cut(s)	75
BbvI	GCAGC	2 cut(s)	415, 631
BccI	CCATC	5 cut(s)	113, 140, 171, 176, 317
BceAI	ACGGC	3 cut(s)	98, 122, 131
BciT130I	CCWGG	1 cut(s)	443
BciVI	GTATCC	1 cut(s)	575
BcoDI	GTCTC	1 cut(s)	160
BfaI	CTAG	2 cut(s)	125, 351
BfoI	RGCGCY	3 cut(s)	41, 198, 619
BfuI	GTATCC	1 cut(s)	575
BisI	GCNGC	4 cut(s)	41, 144, 429, 645
BlsI	GCNGC	4 cut(s)	42, 145, 430, 646
Bme1390I	CCNGG	1 cut(s)	443
Bme18I	GGWCC	2 cut(s)	81, 461
BmeT110I	CYCGRG	2 cut(s)	59, 68
BmgBI	CACGTC	1 cut(s)	22
BmgT120I	GGNCC	2 cut(s)	81, 461
BmiI	GGNNCC	2 cut(s)	8, 196
BmrFI	CCNGG	1 cut(s)	443
BmsI	GCATC	3 cut(s)	45, 283, 572
BmtI	GCTAGC	1 cut(s)	128
BplI	GAGNNNNNCTC	2 cut(s)	468, 500
BsaHI	GRCGYC	1 cut(s)	195
BsaWI	WCCGGW	4 cut(s)	9, 29, 75, 473
Bsc4I	CCNNNNNNNGG	1 cut(s)	75
Bse118I	RCCGGY	2 cut(s)	191, 197
Bse1I	ACTGG	1 cut(s)	118
Bse3DI	GCAATG	1 cut(s)	479
BseAI	TCCGGA	2 cut(s)	29, 473
BseBI	CCWGG	1 cut(s)	443
BseGI	GGATG	2 cut(s)	163, 274
BseLI	CCNNNNNNNGG	1 cut(s)	75
BseMI	GCAATG	1 cut(s)	479
BseNI	ACTGG	1 cut(s)	118
BseXI	GCAGC	2 cut(s)	415, 631
BshFI	GGCC	2 cut(s)	201, 441
BshNI	GGYRCC	1 cut(s)	194
BsiHKAI	GWGCWC	1 cut(s)	75
BsiHKCI	CYCGRG	2 cut(s)	59, 68
BsiSI	CCGG	6 cut(s)	10, 30, 76, 192, 198, 474
BslI	CCNNNNNNNGG	1 cut(s)	75
BsmAI	GTCTC	1 cut(s)	160
BsmBI	CGTCTC	1 cut(s)	160
BsnI	GGCC	2 cut(s)	201, 441
BsoBI	CYCGRG	2 cut(s)	59, 68
Bsp1286I	GDGCHC	2 cut(s)	68, 75
Bsp13I	TCCGGA	2 cut(s)	29, 473
Bsp1407I	TGTACA	1 cut(s)	414
Bsp143I	GATC	1 cut(s)	32
BspACI	CCGC	7 cut(s)	41, 91, 144, 251, 354, 387, 647
BspANI	GGCC	2 cut(s)	201, 441
BspEI	TCCGGA	2 cut(s)	29, 473
BspLI	GGNNCC	2 cut(s)	8, 196
BspOI	GCTAGC	1 cut(s)	128
BspPI	GGATC	1 cut(s)	40
BspT107I	GGYRCC	1 cut(s)	194
BsrDI	GCAATG	1 cut(s)	479
BsrFI	RCCGGY	2 cut(s)	191, 197
BsrGI	TGTACA	1 cut(s)	414
BsrI	ACTGG	1 cut(s)	118
BssAI	RCCGGY	2 cut(s)	191, 197
BssMI	GATC	1 cut(s)	32
BssNI	GRCGYC	1 cut(s)	195
Bst2UI	CCWGG	1 cut(s)	443
Bst4CI	ACNGT	1 cut(s)	716
BstACI	GRCGYC	1 cut(s)	195
BstAUI	TGTACA	1 cut(s)	414
BstC8I	GCNNGC	2 cut(s)	126, 199
BstF5I	GGATG	2 cut(s)	163, 274
BstH2I	RGCGCY	3 cut(s)	41, 198, 619
BstHHI	GCGC	4 cut(s)	40, 197, 344, 618
BstKTI	GATC	1 cut(s)	35
BstMAI	GTCTC	1 cut(s)	160
BstMBI	GATC	1 cut(s)	32
BstMWI	GCNNNNNNNGC	5 cut(s)	134, 143, 203, 250, 650
BstNI	CCWGG	1 cut(s)	443
BstSCI	CCNGG	1 cut(s)	441
BstV1I	GCAGC	2 cut(s)	415, 631
BsuI	GTATCC	1 cut(s)	575
BsuRI	GGCC	2 cut(s)	201, 441
BtgZI	GCGATG	3 cut(s)	94, 118, 154
BtrI	CACGTC	1 cut(s)	22
BtsCI	GGATG	2 cut(s)	163, 274
Cac8I	GCNNGC	2 cut(s)	126, 199
CfoI	GCGC	4 cut(s)	40, 197, 344, 618
Cfr10I	RCCGGY	2 cut(s)	191, 197
Cfr13I	GGNCC	2 cut(s)	81, 461
Csp6I	GTAC	4 cut(s)	46, 256, 415, 634
CviAII	CATG	1 cut(s)	52
CviJI	RGCY	8 cut(s)	66, 73, 128, 201, 428, 441, 535, 644
CviKI_1	RGCY	8 cut(s)	66, 73, 128, 201, 428, 441, 535, 644
CviQI	GTAC	4 cut(s)	46, 256, 415, 634
DinI	GGCGCC	1 cut(s)	196
DpnI	GATC	1 cut(s)	34
DpnII	GATC	1 cut(s)	32
Ecl136II	GAGCTC	1 cut(s)	73
Eco24I	GRGCYC	2 cut(s)	68, 75
Eco47I	GGWCC	2 cut(s)	81, 461
Eco47III	AGCGCT	1 cut(s)	617
Eco53kI	GAGCTC	1 cut(s)	73
Eco88I	CYCGRG	2 cut(s)	59, 68
EcoICRI	GAGCTC	1 cut(s)	73
EcoRII	CCWGG	1 cut(s)	441
EcoT38I	GRGCYC	2 cut(s)	68, 75
EgeI	GGCGCC	1 cut(s)	196
EheI	GGCGCC	1 cut(s)	196
Esp3I	CGTCTC	1 cut(s)	160
FaeI	CATG	1 cut(s)	55
FaiI	YATR	5 cut(s)	53, 380, 550, 594, 627
FatI	CATG	1 cut(s)	51
FauI	CCCGC	1 cut(s)	347
Fnu4HI	GCNGC	4 cut(s)	41, 144, 429, 645
FokI	GGATG	2 cut(s)	150, 261
FriOI	GRGCYC	2 cut(s)	68, 75
Fsp4HI	GCNGC	4 cut(s)	41, 144, 429, 645
FspBI	CTAG	2 cut(s)	125, 351
GlaI	GCGC	4 cut(s)	39, 196, 343, 617
GluI	GCNGC	4 cut(s)	41, 144, 429, 645
HaeII	RGCGCY	3 cut(s)	41, 198, 619
HaeIII	GGCC	2 cut(s)	201, 441
HapII	CCGG	6 cut(s)	10, 30, 76, 192, 198, 474
HhaI	GCGC	4 cut(s)	40, 197, 344, 618
Hin1I	GRCGYC	1 cut(s)	195
Hin1II	CATG	1 cut(s)	55
Hin6I	GCGC	4 cut(s)	38, 195, 342, 616
HinP1I	GCGC	4 cut(s)	38, 195, 342, 616
HinfI	GANTC	3 cut(s)	26, 371, 508
HpaII	CCGG	6 cut(s)	10, 30, 76, 192, 198, 474
HphI	GGTGA	4 cut(s)	29, 298, 373, 400
Hpy166II	GTNNAC	1 cut(s)	417
Hpy188I	TCNGA	3 cut(s)	332, 507, 513
Hpy188III	TCNNGA	3 cut(s)	30, 61, 474
Hpy8I	GTNNAC	1 cut(s)	417
Hpy99I	CGWCG	5 cut(s)	143, 152, 155, 329, 332
HpyAV	CCTTC	3 cut(s)	244, 331, 352
HpyCH4III	ACNGT	1 cut(s)	716
HpyCH4IV	ACGT	1 cut(s)	21
HpyCH4V	TGCA	1 cut(s)	431
HpyF10VI	GCNNNNNNNGC	5 cut(s)	134, 143, 203, 250, 650
HpySE526I	ACGT	1 cut(s)	21
Hsp92I	GRCGYC	1 cut(s)	195
Hsp92II	CATG	1 cut(s)	55
HspAI	GCGC	4 cut(s)	38, 195, 342, 616
KasI	GGCGCC	1 cut(s)	194
Kpn2I	TCCGGA	2 cut(s)	29, 473
KroI	GCCGGC	1 cut(s)	197
KroNI	GCCGGC	1 cut(s)	199
Kzo9I	GATC	1 cut(s)	32
LmnI	GCTCC	2 cut(s)	78, 476
Lsp1109I	GCAGC	2 cut(s)	415, 631
LweI	GCATC	3 cut(s)	45, 283, 572
MaeI	CTAG	2 cut(s)	125, 351
MaeII	ACGT	1 cut(s)	21
MaeIII	GTNAC	1 cut(s)	17
MalI	GATC	1 cut(s)	34
MboI	GATC	1 cut(s)	32
MboII	GAAGA	2 cut(s)	172, 511
MhlI	GDGCHC	2 cut(s)	68, 75
MluCI	AATT	2 cut(s)	283, 399
Mly113I	GGCGCC	1 cut(s)	195
MlyI	GAGTC	1 cut(s)	380
MmeI	TCCRAC	1 cut(s)	310
MnlI	CCTC	6 cut(s)	212, 230, 264, 431, 534, 698
MroI	TCCGGA	2 cut(s)	29, 473
MroNI	GCCGGC	1 cut(s)	197
MspA1I	CMGCKG	3 cut(s)	43, 253, 389
MspI	CCGG	6 cut(s)	10, 30, 76, 192, 198, 474
MspR9I	CCNGG	1 cut(s)	443
MvaI	CCWGG	1 cut(s)	443
MwoI	GCNNNNNNNGC	5 cut(s)	134, 143, 203, 250, 650
NaeI	GCCGGC	1 cut(s)	199
NarI	GGCGCC	1 cut(s)	195
NdeII	GATC	1 cut(s)	32
NgoMIV	GCCGGC	1 cut(s)	197
NheI	GCTAGC	1 cut(s)	124
NlaIII	CATG	1 cut(s)	55
NlaIV	GGNNCC	2 cut(s)	8, 196
NmuCI	GTSAC	1 cut(s)	17
PaeR7I	CTCGAG	1 cut(s)	59
PcsI	WCGNNNNNNNCGW	2 cut(s)	66, 147
PdiI	GCCGGC	1 cut(s)	199
PfeI	GAWTC	2 cut(s)	26, 508
PkrI	GCNGC	4 cut(s)	42, 145, 430, 646
PleI	GAGTC	1 cut(s)	379
PluTI	GGCGCC	1 cut(s)	198
PpsI	GAGTC	1 cut(s)	379
Psp124BI	GAGCTC	1 cut(s)	75
Psp6I	CCWGG	1 cut(s)	441
PspGI	CCWGG	1 cut(s)	441
PspN4I	GGNNCC	2 cut(s)	8, 196
PspPI	GGNCC	2 cut(s)	81, 461
RsaI	GTAC	4 cut(s)	47, 257, 416, 635
RsaNI	GTAC	4 cut(s)	46, 256, 415, 634
SacI	GAGCTC	1 cut(s)	75
SatI	GCNGC	4 cut(s)	41, 144, 429, 645
Sau3AI	GATC	1 cut(s)	32
Sau96I	GGNCC	2 cut(s)	81, 461
SchI	GAGTC	1 cut(s)	380
ScrFI	CCNGG	1 cut(s)	443
SduI	GDGCHC	2 cut(s)	68, 75
SetI	ASST	7 cut(s)	19, 24, 75, 363, 537, 678, 709
SfaNI	GCATC	3 cut(s)	45, 283, 572
SfoI	GGCGCC	1 cut(s)	196
Sfr274I	CTCGAG	1 cut(s)	59
SgrAI	CRCCGGYG	1 cut(s)	191
SinI	GGWCC	2 cut(s)	81, 461
SlaI	CTCGAG	1 cut(s)	59
SmlI	CTYRAG	1 cut(s)	59
SmoI	CTYRAG	1 cut(s)	59
Sse9I	AATT	2 cut(s)	283, 399
SsiI	CCGC	7 cut(s)	41, 91, 144, 251, 354, 387, 647
SspDI	GGCGCC	1 cut(s)	194
SspMI	CTAG	2 cut(s)	125, 351
SstI	GAGCTC	1 cut(s)	75
StyD4I	CCNGG	1 cut(s)	441
TaaI	ACNGT	1 cut(s)	716
TaiI	ACGT	1 cut(s)	24
TaqI	TCGA	1 cut(s)	60
TasI	AATT	2 cut(s)	283, 399
TatI	WGTACW	3 cut(s)	255, 414, 633
TauI	GCSGC	2 cut(s)	43, 146
TfiI	GAWTC	2 cut(s)	26, 508
TseFI	GTSAC	1 cut(s)	17
TseI	GCWGC	2 cut(s)	428, 644
Tsp45I	GTSAC	1 cut(s)	17
TspDTI	ATGAA	2 cut(s)	226, 277
TspGWI	ACGGA	2 cut(s)	453, 614
VpaK11BI	GGWCC	2 cut(s)	81, 461
XhoI	CTCGAG	1 cut(s)	59
XspI	CTAG	2 cut(s)	125, 351

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.