FvH4_2g24870

Belongs to the BI1 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
OG0006198
Physical Location & Seq
Forward (+)
20226428 .. 20228231
1804 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g24870.t1

Sequence Viewer

Length: 732 bp
ATGAAGACCCGAAACAATGACTTGGAAGCCGGAACGACCCCGCTACTCTACCCTTCTATGACTGAGAACCCCGAGCTCCGATGGGCCTTCATCCGAAAAGTCTATGCCATCCTCACCTTCCAGATACTCCTCACCATTCCCGTCGCCGCCACCGTCTTCTTTTACCCTGCAATCGCCGTTTTCCTTATCGAAACTTGGCTCGGATGGTTTCTCAAAAACACTATCATCATCACCTCCCTTGTTGTGCTCGTCGCCATGATTGCTTATAGCAAACAGCACCCTCTGAATTACATGCTCCTTGGGGCTTTCACTATCTGTGAGGCACTCATGGTCGGAGTTAGTTGTGCATTCATCAGTGGGAAGGTGGTTTTGGAGGCTGCCATTCTTACCGCTGCAATTTTTCTAGGCCTGACCTTGTATACCTTTTGGGGTGCAAGGAGAGGCCATGACTTCAACTTCTTGGGTCCTTTCTTGTTTGCATCCCTGCTGGCTCTGCTTGTCTTTGGAGTGATACAGATTTTCCTCCCTCTTGGTAAGACGAGTCATATGATTATCGGGATTGTTGGAATACTCGTATTCTGTGGCTACATTGTCCATGACACAGACGAACTGATCAAGCGCTACGAGTATGATGAGTACATTCTTGCGGCCATTGACTTGTATTTGGACCTCATCAACTTGTTTCTCAAGATATTGGAGATGATGAAGAAGGCAGAGAGCTCAGATCGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Bax1-I

Protein Analysis

244

Amino Acids

27.38

Weight (kDa)

6.08

Isoelectric Point (pI)

29.01

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Bax1-I PF01027 29 - 235 3.7e-51 Inhibitor of apoptosis-promoting Bax1
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 419
AciI CCGC 4 cut(s) 41, 147, 390, 647
AcoI YGGCCR 1 cut(s) 648
AfaI GTAC 1 cut(s) 638
AfeI AGCGCT 1 cut(s) 620
AgsI TTSAA 1 cut(s) 454
AjuI GAANNNNNNNTTGG 2 cut(s) 353, 385
AluBI AGCT 2 cut(s) 76, 720
AluI AGCT 2 cut(s) 76, 720
Alw21I GWGCWC 3 cut(s) 78, 249, 722
Ama87I CYCGRG 1 cut(s) 71
Aor51HI AGCGCT 1 cut(s) 620
AoxI GGCC 4 cut(s) 84, 406, 442, 648
ApeKI GCWGC 2 cut(s) 377, 392
AspLEI GCGC 1 cut(s) 621
AspS9I GGNCC 3 cut(s) 84, 464, 667
AsuHPI GGTGA 3 cut(s) 106, 124, 223
AvaI CYCGRG 1 cut(s) 71
AvaII GGWCC 2 cut(s) 464, 667
BanII GRGCYC 2 cut(s) 78, 722
BbsI GAAGAC 2 cut(s) 11, 148
Bbv12I GWGCWC 3 cut(s) 78, 249, 722
BbvI GCAGC 2 cut(s) 364, 379
BccI CCATC 3 cut(s) 75, 116, 198
BceAI ACGGC 1 cut(s) 161
BclI TGATCA 1 cut(s) 612
BfaI CTAG 1 cut(s) 404
BfoI RGCGCY 1 cut(s) 622
BisI GCNGC 4 cut(s) 147, 378, 393, 648
BlsI GCNGC 4 cut(s) 148, 379, 394, 649
Bme18I GGWCC 2 cut(s) 464, 667
BmeT110I CYCGRG 1 cut(s) 71
BmgT120I GGNCC 3 cut(s) 84, 464, 667
BmiI GGNNCC 1 cut(s) 465
BmsI GCATC 1 cut(s) 488
BpiI GAAGAC 2 cut(s) 11, 148
BpuEI CTTGAG 1 cut(s) 671
Bsa29I ATCGAT 1 cut(s) 727
BsaJI CCNNGG 1 cut(s) 298
BseCI ATCGAT 1 cut(s) 727
BseDI CCNNGG 1 cut(s) 298
BseGI GGATG 4 cut(s) 90, 108, 209, 479
BseMII CTCAG 1 cut(s) 54
BseRI GAGGAG 1 cut(s) 119
BseXI GCAGC 2 cut(s) 364, 379
BshFI GGCC 4 cut(s) 86, 408, 444, 650
BshVI ATCGAT 1 cut(s) 727
BsiHKAI GWGCWC 3 cut(s) 78, 249, 722
BsiHKCI CYCGRG 1 cut(s) 71
BsiSI CCGG 1 cut(s) 30
BsmI GAATGC 1 cut(s) 347
BsnI GGCC 4 cut(s) 86, 408, 444, 650
BsoBI CYCGRG 1 cut(s) 71
Bsp1286I GDGCHC 3 cut(s) 78, 249, 722
Bsp143I GATC 2 cut(s) 612, 724
BspACI CCGC 4 cut(s) 41, 147, 390, 647
BspANI GGCC 4 cut(s) 86, 408, 444, 650
BspCNI CTCAG 1 cut(s) 55
BspDI ATCGAT 1 cut(s) 727
BspLI GGNNCC 1 cut(s) 465
BssECI CCNNGG 1 cut(s) 298
BssMI GATC 2 cut(s) 612, 724
BssNAI GTATAC 1 cut(s) 420
BssT1I CCWWGG 1 cut(s) 298
Bst1107I GTATAC 1 cut(s) 420
Bst4CI ACNGT 1 cut(s) 154
BstC8I GCNNGC 1 cut(s) 489
BstDEI CTNAG 2 cut(s) 63, 721
BstF5I GGATG 4 cut(s) 90, 108, 209, 479
BstH2I RGCGCY 1 cut(s) 622
BstHHI GCGC 1 cut(s) 621
BstKTI GATC 2 cut(s) 615, 727
BstMBI GATC 2 cut(s) 612, 724
BstMWI GCNNNNNNNGC 2 cut(s) 260, 493
BstNSI RCATGY 1 cut(s) 295
BstV1I GCAGC 2 cut(s) 364, 379
BstV2I GAAGAC 2 cut(s) 11, 148
BstZ17I GTATAC 1 cut(s) 420
Bsu15I ATCGAT 1 cut(s) 727
BsuRI GGCC 4 cut(s) 86, 408, 444, 650
BsuTUI ATCGAT 1 cut(s) 727
BtsCI GGATG 4 cut(s) 90, 108, 209, 479
BtsIMutI CAGTG 1 cut(s) 361
Cac8I GCNNGC 1 cut(s) 489
CfoI GCGC 1 cut(s) 621
Cfr13I GGNCC 3 cut(s) 84, 464, 667
ClaI ATCGAT 1 cut(s) 727
Csp6I GTAC 1 cut(s) 637
CviAII CATG 5 cut(s) 256, 292, 328, 446, 596
CviQI GTAC 1 cut(s) 637
DdeI CTNAG 2 cut(s) 63, 721
DpnI GATC 2 cut(s) 614, 726
DpnII GATC 2 cut(s) 612, 724
EaeI YGGCCR 1 cut(s) 648
Ecl136II GAGCTC 2 cut(s) 76, 720
Eco130I CCWWGG 1 cut(s) 298
Eco147I AGGCCT 1 cut(s) 408
Eco24I GRGCYC 2 cut(s) 78, 722
Eco47I GGWCC 2 cut(s) 464, 667
Eco47III AGCGCT 1 cut(s) 620
Eco53kI GAGCTC 2 cut(s) 76, 720
Eco88I CYCGRG 1 cut(s) 71
EcoICRI GAGCTC 2 cut(s) 76, 720
EcoO109I RGGNCCY 1 cut(s) 464
EcoT14I CCWWGG 1 cut(s) 298
EcoT38I GRGCYC 2 cut(s) 78, 722
ErhI CCWWGG 1 cut(s) 298
FaeI CATG 5 cut(s) 259, 295, 331, 449, 599
FatI CATG 5 cut(s) 255, 291, 327, 445, 595
FauI CCCGC 1 cut(s) 48
FauNDI CATATG 1 cut(s) 546
FbaI TGATCA 1 cut(s) 612
FblI GTMKAC 1 cut(s) 419
Fnu4HI GCNGC 4 cut(s) 147, 378, 393, 648
FokI GGATG 4 cut(s) 77, 95, 216, 466
FriOI GRGCYC 2 cut(s) 78, 722
Fsp4HI GCNGC 4 cut(s) 147, 378, 393, 648
FspBI CTAG 1 cut(s) 404
GlaI GCGC 1 cut(s) 620
GluI GCNGC 4 cut(s) 147, 378, 393, 648
HaeII RGCGCY 1 cut(s) 622
HaeIII GGCC 4 cut(s) 86, 408, 444, 650
HapII CCGG 1 cut(s) 30
HhaI GCGC 1 cut(s) 621
Hin1II CATG 5 cut(s) 259, 295, 331, 449, 599
Hin6I GCGC 1 cut(s) 619
HinP1I GCGC 1 cut(s) 619
HinfI GANTC 1 cut(s) 541
HpaII CCGG 1 cut(s) 30
HphI GGTGA 3 cut(s) 106, 124, 223
Hpy166II GTNNAC 1 cut(s) 420
Hpy188I TCNGA 6 cut(s) 80, 95, 203, 285, 335, 724
Hpy188III TCNNGA 3 cut(s) 121, 556, 688
Hpy8I GTNNAC 1 cut(s) 420
Hpy99I CGWCG 2 cut(s) 146, 254
HpyAV CCTTC 5 cut(s) 63, 97, 127, 355, 703
HpyCH4III ACNGT 1 cut(s) 154
HpyCH4V TGCA 5 cut(s) 170, 347, 395, 434, 479
HpyF10VI GCNNNNNNNGC 2 cut(s) 260, 493
HpyF3I CTNAG 2 cut(s) 63, 721
Hsp92II CATG 5 cut(s) 259, 295, 331, 449, 599
HspAI GCGC 1 cut(s) 619
Ksp22I TGATCA 1 cut(s) 612
Kzo9I GATC 2 cut(s) 612, 724
LmnI GCTCC 2 cut(s) 81, 300
LpnPI CCDG 6 cut(s) 43, 134, 180, 422, 473, 497
Lsp1109I GCAGC 2 cut(s) 364, 379
LweI GCATC 1 cut(s) 488
MaeI CTAG 1 cut(s) 404
MalI GATC 2 cut(s) 614, 726
MboI GATC 2 cut(s) 612, 724
MboII GAAGA 3 cut(s) 16, 148, 718
MhlI GDGCHC 3 cut(s) 78, 249, 722
MluCI AATT 2 cut(s) 286, 396
MlyI GAGTC 1 cut(s) 550
MmeI TCCRAC 2 cut(s) 313, 544
MspA1I CMGCKG 1 cut(s) 392
MspI CCGG 1 cut(s) 30
Mva1269I GAATGC 1 cut(s) 347
MwoI GCNNNNNNNGC 2 cut(s) 260, 493
NdeI CATATG 1 cut(s) 546
NdeII GATC 2 cut(s) 612, 724
NlaIII CATG 5 cut(s) 259, 295, 331, 449, 599
NlaIV GGNNCC 1 cut(s) 465
NspI RCATGY 1 cut(s) 295
PceI AGGCCT 1 cut(s) 408
PcsI WCGNNNNNNNCGW 1 cut(s) 150
PctI GAATGC 1 cut(s) 347
PkrI GCNGC 4 cut(s) 148, 379, 394, 649
PleI GAGTC 1 cut(s) 549
PpsI GAGTC 1 cut(s) 549
PpuMI RGGWCCY 1 cut(s) 464
Psp124BI GAGCTC 2 cut(s) 78, 722
Psp5II RGGWCCY 1 cut(s) 464
PspN4I GGNNCC 1 cut(s) 465
PspPI GGNCC 3 cut(s) 84, 464, 667
PspPPI RGGWCCY 1 cut(s) 464
RsaI GTAC 1 cut(s) 638
RsaNI GTAC 1 cut(s) 637
SacI GAGCTC 2 cut(s) 78, 722
SatI GCNGC 4 cut(s) 147, 378, 393, 648
Sau3AI GATC 2 cut(s) 612, 724
Sau96I GGNCC 3 cut(s) 84, 464, 667
SchI GAGTC 1 cut(s) 550
SduI GDGCHC 3 cut(s) 78, 249, 722
SetI ASST 8 cut(s) 78, 119, 236, 366, 416, 425, 672, 722
SfaNI GCATC 1 cut(s) 488
SinI GGWCC 2 cut(s) 464, 667
SmlI CTYRAG 1 cut(s) 686
SmoI CTYRAG 1 cut(s) 686
Sse9I AATT 2 cut(s) 286, 396
SseBI AGGCCT 1 cut(s) 408
SsiI CCGC 4 cut(s) 41, 147, 390, 647
SspMI CTAG 1 cut(s) 404
SstI GAGCTC 2 cut(s) 78, 722
StuI AGGCCT 1 cut(s) 408
StyI CCWWGG 1 cut(s) 298
TaaI ACNGT 1 cut(s) 154
TaqI TCGA 2 cut(s) 189, 727
TasI AATT 2 cut(s) 286, 396
TatI WGTACW 1 cut(s) 636
TauI GCSGC 2 cut(s) 149, 650
TscAI CASTG 1 cut(s) 361
TseI GCWGC 2 cut(s) 377, 392
TspDTI ATGAA 4 cut(s) 17, 79, 340, 719
TspRI CASTG 1 cut(s) 361
VpaK11BI GGWCC 2 cut(s) 464, 667
XceI RCATGY 1 cut(s) 295
XmiI GTMKAC 1 cut(s) 419
XspI CTAG 1 cut(s) 404
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.