Rroxscaffold_7G00174750

Belongs to the BI1 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
OG0006198
Physical Location & Seq
Reverse (-)
14451318 .. 14451659
342 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_7G00174750.1

Sequence Viewer

Length: 342 bp
ATGTACCCGGCCTCTAGGCTCTCGCTGTTTAATTTGAATTCCTTCCACTGCTGTAATGTGTTCAATTATATTCGAATTTTTAAATCTTGGGTTAATAATACATTCATATGGATCCTGTTGCAGATTTTCCTCCCCCTTGGTAAGACTAGTCATATGATATACGGGATTGTGGGAATACTTATATTCTGTGGCTACATTGTCCATGACACAGATGAATTGATCAAGCGCTACGAGTACGATGAGTACATTTTGGCGGCCATCGACTTGTATTTGGACCTCCTCAACTTGTTTCTCAGGTTTCTCGAGTTGATGAAAGATGCTGAGAGCTCAGACGATGCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Bax1-I

Protein Analysis

113

Amino Acids

13.36

Weight (kDa)

4.92

Isoelectric Point (pI)

25.14

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Bax1-I PF01027 35 - 104 1.1e-20 Inhibitor of apoptosis-promoting Bax1
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 254
AclWI GGATC 2 cut(s) 106, 119
AcoI YGGCCR 1 cut(s) 255
AcsI RAATTY 2 cut(s) 37, 75
AfaI GTAC 3 cut(s) 5, 236, 245
AfeI AGCGCT 1 cut(s) 227
AgsI TTSAA 2 cut(s) 37, 64
AhlI ACTAGT 1 cut(s) 146
AluBI AGCT 1 cut(s) 327
AluI AGCT 1 cut(s) 327
Alw21I GWGCWC 1 cut(s) 329
AlwI GGATC 2 cut(s) 106, 119
Ama87I CYCGRG 1 cut(s) 302
Aor51HI AGCGCT 1 cut(s) 227
AoxI GGCC 2 cut(s) 9, 255
ApoI RAATTY 2 cut(s) 37, 75
Asp700I GAANNNNTTC 1 cut(s) 41
AspLEI GCGC 1 cut(s) 228
AspS9I GGNCC 1 cut(s) 274
AsuC2I CCSGG 1 cut(s) 8
AsuII TTCGAA 1 cut(s) 73
AvaI CYCGRG 1 cut(s) 302
AvaII GGWCC 1 cut(s) 274
BamHI GGATCC 1 cut(s) 111
BanII GRGCYC 1 cut(s) 329
Bbv12I GWGCWC 1 cut(s) 329
BccI CCATC 1 cut(s) 266
BclI TGATCA 1 cut(s) 219
BcnI CCSGG 1 cut(s) 8
BcuI ACTAGT 1 cut(s) 146
BfaI CTAG 2 cut(s) 15, 147
BfoI RGCGCY 1 cut(s) 229
BisI GCNGC 1 cut(s) 255
BlsI GCNGC 1 cut(s) 256
Bme1390I CCNGG 1 cut(s) 8
Bme18I GGWCC 1 cut(s) 274
BmeT110I CYCGRG 1 cut(s) 302
BmgT120I GGNCC 1 cut(s) 274
BmiI GGNNCC 1 cut(s) 113
BmrFI CCNGG 1 cut(s) 8
BmsI GCATC 2 cut(s) 307, 325
Bpu14I TTCGAA 1 cut(s) 73
BpuMI CCSGG 1 cut(s) 8
BsaJI CCNNGG 1 cut(s) 136
BseDI CCNNGG 1 cut(s) 136
BseMII CTCAG 3 cut(s) 307, 312, 342
BseRI GAGGAG 1 cut(s) 269
BshFI GGCC 2 cut(s) 11, 257
BsiHKAI GWGCWC 1 cut(s) 329
BsiHKCI CYCGRG 1 cut(s) 302
BsiSI CCGG 1 cut(s) 8
BsnI GGCC 2 cut(s) 11, 257
BsoBI CYCGRG 1 cut(s) 302
Bsp119I TTCGAA 1 cut(s) 73
Bsp1286I GDGCHC 1 cut(s) 329
Bsp143I GATC 2 cut(s) 111, 219
BspACI CCGC 1 cut(s) 254
BspANI GGCC 2 cut(s) 11, 257
BspCNI CTCAG 3 cut(s) 306, 313, 341
BspLI GGNNCC 1 cut(s) 113
BspPI GGATC 2 cut(s) 106, 119
BspT104I TTCGAA 1 cut(s) 73
BssECI CCNNGG 1 cut(s) 136
BssMI GATC 2 cut(s) 111, 219
BssT1I CCWWGG 1 cut(s) 136
BstBI TTCGAA 1 cut(s) 73
BstDEI CTNAG 3 cut(s) 293, 321, 328
BstH2I RGCGCY 1 cut(s) 229
BstHHI GCGC 1 cut(s) 228
BstKTI GATC 2 cut(s) 114, 222
BstMBI GATC 2 cut(s) 111, 219
BstSCI CCNGG 1 cut(s) 6
BstX2I RGATCY 1 cut(s) 111
BstYI RGATCY 1 cut(s) 111
BsuRI GGCC 2 cut(s) 11, 257
BtsI GCAGTG 1 cut(s) 46
BtsIMutI CAGTG 1 cut(s) 46
CfoI GCGC 1 cut(s) 228
Cfr13I GGNCC 1 cut(s) 274
Csp6I GTAC 3 cut(s) 4, 235, 244
CviAII CATG 1 cut(s) 203
CviJI RGCY 5 cut(s) 11, 19, 192, 257, 327
CviKI_1 RGCY 5 cut(s) 11, 19, 192, 257, 327
CviQI GTAC 3 cut(s) 4, 235, 244
DdeI CTNAG 3 cut(s) 293, 321, 328
DpnI GATC 2 cut(s) 113, 221
DpnII GATC 2 cut(s) 111, 219
DraI TTTAAA 1 cut(s) 82
EaeI YGGCCR 1 cut(s) 255
Ecl136II GAGCTC 1 cut(s) 327
Eco130I CCWWGG 1 cut(s) 136
Eco24I GRGCYC 1 cut(s) 329
Eco47I GGWCC 1 cut(s) 274
Eco47III AGCGCT 1 cut(s) 227
Eco53kI GAGCTC 1 cut(s) 327
Eco88I CYCGRG 1 cut(s) 302
EcoICRI GAGCTC 1 cut(s) 327
EcoRI GAATTC 1 cut(s) 37
EcoT14I CCWWGG 1 cut(s) 136
EcoT38I GRGCYC 1 cut(s) 329
ErhI CCWWGG 1 cut(s) 136
FaeI CATG 1 cut(s) 206
FaiI YATR 8 cut(s) 69, 107, 109, 153, 155, 160, 182, 204
FatI CATG 1 cut(s) 202
FauNDI CATATG 2 cut(s) 107, 153
FbaI TGATCA 1 cut(s) 219
Fnu4HI GCNGC 1 cut(s) 255
FriOI GRGCYC 1 cut(s) 329
Fsp4HI GCNGC 1 cut(s) 255
FspBI CTAG 2 cut(s) 15, 147
GlaI GCGC 1 cut(s) 227
GluI GCNGC 1 cut(s) 255
HaeII RGCGCY 1 cut(s) 229
HaeIII GGCC 2 cut(s) 11, 257
HapII CCGG 1 cut(s) 8
HhaI GCGC 1 cut(s) 228
Hin1II CATG 1 cut(s) 206
Hin6I GCGC 1 cut(s) 226
HinP1I GCGC 1 cut(s) 226
HpaII CCGG 1 cut(s) 8
Hpy188I TCNGA 1 cut(s) 331
Hpy188III TCNNGA 1 cut(s) 302
HpyAV CCTTC 1 cut(s) 52
HpyCH4V TGCA 1 cut(s) 121
HpyF3I CTNAG 3 cut(s) 293, 321, 328
Hsp92II CATG 1 cut(s) 206
HspAI GCGC 1 cut(s) 226
Ksp22I TGATCA 1 cut(s) 219
Kzo9I GATC 2 cut(s) 111, 219
LpnPI CCDG 3 cut(s) 21, 128, 280
LweI GCATC 2 cut(s) 307, 325
MaeI CTAG 2 cut(s) 15, 147
MalI GATC 2 cut(s) 113, 221
MboI GATC 2 cut(s) 111, 219
MflI RGATCY 1 cut(s) 111
MhlI GDGCHC 1 cut(s) 329
MluCI AATT 5 cut(s) 31, 37, 64, 75, 215
MnlI CCTC 4 cut(s) 22, 140, 287, 290
MroXI GAANNNNTTC 1 cut(s) 41
MseI TTAA 4 cut(s) 30, 81, 93, 340
MslI CAYNNNNRTG 1 cut(s) 106
MspI CCGG 1 cut(s) 8
MspR9I CCNGG 1 cut(s) 8
NciI CCSGG 1 cut(s) 8
NdeI CATATG 2 cut(s) 107, 153
NdeII GATC 2 cut(s) 111, 219
NlaIII CATG 1 cut(s) 206
NlaIV GGNNCC 1 cut(s) 113
NspV TTCGAA 1 cut(s) 73
PaeR7I CTCGAG 1 cut(s) 302
PdmI GAANNNNTTC 1 cut(s) 41
PkrI GCNGC 1 cut(s) 256
Psp124BI GAGCTC 1 cut(s) 329
PspN4I GGNNCC 1 cut(s) 113
PspPI GGNCC 1 cut(s) 274
PsuI RGATCY 1 cut(s) 111
RsaI GTAC 3 cut(s) 5, 236, 245
RsaNI GTAC 3 cut(s) 4, 235, 244
RseI CAYNNNNRTG 1 cut(s) 106
SacI GAGCTC 1 cut(s) 329
SaqAI TTAA 4 cut(s) 30, 81, 93, 340
SatI GCNGC 1 cut(s) 255
Sau3AI GATC 2 cut(s) 111, 219
Sau96I GGNCC 1 cut(s) 274
ScrFI CCNGG 1 cut(s) 8
SduI GDGCHC 1 cut(s) 329
SetI ASST 3 cut(s) 279, 299, 329
SfaNI GCATC 2 cut(s) 307, 325
Sfr274I CTCGAG 1 cut(s) 302
SfuI TTCGAA 1 cut(s) 73
SinI GGWCC 1 cut(s) 274
SlaI CTCGAG 1 cut(s) 302
SmiMI CAYNNNNRTG 1 cut(s) 106
SmlI CTYRAG 1 cut(s) 302
SmoI CTYRAG 1 cut(s) 302
SpeI ACTAGT 1 cut(s) 146
Sse9I AATT 5 cut(s) 31, 37, 64, 75, 215
SsiI CCGC 1 cut(s) 254
SspMI CTAG 2 cut(s) 15, 147
SstI GAGCTC 1 cut(s) 329
StyD4I CCNGG 1 cut(s) 6
StyI CCWWGG 1 cut(s) 136
TaqI TCGA 3 cut(s) 73, 261, 303
TasI AATT 5 cut(s) 31, 37, 64, 75, 215
TatI WGTACW 1 cut(s) 243
TauI GCSGC 1 cut(s) 257
Tru1I TTAA 4 cut(s) 30, 81, 93, 340
Tru9I TTAA 4 cut(s) 30, 81, 93, 340
TscAI CASTG 1 cut(s) 53
TspDTI ATGAA 3 cut(s) 94, 228, 326
TspRI CASTG 1 cut(s) 53
VpaK11BI GGWCC 1 cut(s) 274
XapI RAATTY 2 cut(s) 37, 75
XhoI CTCGAG 1 cut(s) 302
XmnI GAANNNNTTC 1 cut(s) 41
XspI CTAG 2 cut(s) 15, 147
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.