Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0006198

Physical Location & Seq

Genomic Coordinates Forward (+)

55521548 .. 55523586

Gene Structure 2039 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ26267

Sequence Viewer

CDS Protein Promoter (2k)

Length: 855 bp

ATGAAGACACGGTTGAGCCAGAATAATGACTTGGAAGCCGGAGCGACCCCTTTACTCTACCCTTCGATGACGGGGAGGCCGGAGTTCCAATGGGCCTTCATCCGCAAAGTCTATGCCATCCTCACCTTTCAGATACTCCTCACCATCCCCATCGTCGCCACCGTCTACTTTAATCCTGCAATCGCCGTATTCCTTATCGAAACTTGGCTCGGATGGTTTCTGAAACAAACGATCATCATCACCTCCCTTGCTGTGCTCGTCGCCATGGTGTTTTGTAGCAAACATCACCAGCTAAATTACGTGCTCCTTGGGGCTTTCACTATATGTGAGGCCCTCATGGTCGGAGGTTTGGAGGCTGTGATTCTAACTGCTGTGATTTTTCTAAGTCTGACCTTGTACACCTTTTGCGCCGCAAGGAGAGGCCATGACTTCAACTTCTTGGGTCCTTTCTTGTTTGCATCCCTGCTGGCTCTGCTTGTCTTTGGAGTGATACAGGTATTTGTGCTTAATTGCATGTACCCGGCCTCTAGGCTCTCGCTGCTTAATTTGAATTTATTCCACTGCCGTAATGTGTTCAATTATATTCGAAATTTTAAATCCTGGGTTAATAATACATTCATATGGATCTTGTTGCAGATTTTCCTCCCTCTTGGTAAGACTAGTCATATGATATACGGGATTGTGGGAATACTCATATTCTGTGGCTATATTGTCCATGACACAGATGAATTGATCAAGCACTACGAGTACGATGAGTACATTTTGGCGGCCATCGACTTGTATTTGGACCTCCTCAACTTGTTTCTCAGGTTTCTCGAGTTGATGAAAGATGCTGAGAGCTCAGACGATGCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Bax1-I

Protein Analysis

284

Amino Acids

32.47

Weight (kDa)

6.14

Isoelectric Point (pI)

26.3

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Bax1-I	PF01027	32 - 169	6.4e-16	Inhibitor of apoptosis-promoting Bax1
Bax1-I	PF01027	206 - 275	9.1e-20	Inhibitor of apoptosis-promoting Bax1

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006198)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G03070 AT1G03070 AT1G03070 AT3G63310 AT4G02690 AT4G02690
fragaria_vesca	FvH4_2g23060 FvH4_2g24870
malus_domestica	MD03G1259200.v1.1 MD11G1279800.v1.1
prunus_persica	Prupe.8G235700_v2.0.a1
pyrus_communis	pycom03g20700 pycom11g24750
rosa_chinensis	RchiOBHm_Chr6g0290161 RchiOBHm_Chr6g0292711
rosa_laevigata	RLG00000011997 RLG00000012236
rosa_multiflora	Rmu_co8443445.1_g000001 Rmu_sc0002902.1_g000017
rosa_roxburghii	Rroxscaffold_7G00174750 Rroxscaffold_7G00177280
rosa_rugosa	Rorug06G0210500 Rorug06G0229200
rosa_samantha	Rh6BG349700 Rh6DG321200
rosa_wichuraiana	Rw6G027730 Rw6G029870

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	165
AciI	CCGC	3 cut(s)	103, 411, 767
AclWI	GGATC	1 cut(s)	632
AcoI	YGGCCR	1 cut(s)	768
AcsI	RAATTY	2 cut(s)	550, 589
AfaI	GTAC	4 cut(s)	398, 518, 749, 758
AgsI	TTSAA	3 cut(s)	433, 550, 577
AhlI	ACTAGT	1 cut(s)	659
AjnI	CCWGG	1 cut(s)	599
AjuI	GAANNNNNNNTTGG	2 cut(s)	14, 46
AluBI	AGCT	2 cut(s)	292, 840
AluI	AGCT	2 cut(s)	292, 840
Alw21I	GWGCWC	3 cut(s)	258, 306, 842
AlwI	GGATC	1 cut(s)	632
Ama87I	CYCGRG	1 cut(s)	815
AoxI	GGCC	6 cut(s)	77, 93, 330, 421, 522, 768
ApeKI	GCWGC	1 cut(s)	538
ApoI	RAATTY	2 cut(s)	550, 589
Asp700I	GAANNNNTTC	1 cut(s)	554
AspLEI	GCGC	1 cut(s)	410
AspS9I	GGNCC	4 cut(s)	93, 331, 443, 787
AsuC2I	CCSGG	1 cut(s)	521
AsuHPI	GGTGA	4 cut(s)	115, 133, 232, 278
AsuII	TTCGAA	1 cut(s)	586
AvaI	CYCGRG	1 cut(s)	815
AvaII	GGWCC	2 cut(s)	443, 787
BanII	GRGCYC	1 cut(s)	842
BbsI	GAAGAC	1 cut(s)	11
Bbv12I	GWGCWC	3 cut(s)	258, 306, 842
BbvI	GCAGC	1 cut(s)	525
BccI	CCATC	5 cut(s)	125, 152, 158, 207, 779
BceAI	ACGGC	2 cut(s)	170, 549
BciT130I	CCWGG	1 cut(s)	601
BclI	TGATCA	1 cut(s)	732
BcnI	CCSGG	1 cut(s)	521
BcuI	ACTAGT	1 cut(s)	659
BfaI	CTAG	2 cut(s)	528, 660
BisI	GCNGC	3 cut(s)	411, 539, 768
BlsI	GCNGC	3 cut(s)	412, 540, 769
Bme1390I	CCNGG	2 cut(s)	521, 601
Bme18I	GGWCC	2 cut(s)	443, 787
BmeT110I	CYCGRG	1 cut(s)	815
BmgT120I	GGNCC	4 cut(s)	93, 331, 443, 787
BmiI	GGNNCC	1 cut(s)	444
BmrFI	CCNGG	2 cut(s)	521, 601
BmsI	GCATC	3 cut(s)	467, 820, 838
BpiI	GAAGAC	1 cut(s)	11
Bpu14I	TTCGAA	1 cut(s)	586
BpuMI	CCSGG	1 cut(s)	521
BsaAI	YACGTR	1 cut(s)	301
BsaBI	GATNNNNATC	1 cut(s)	236
BsaJI	CCNNGG	3 cut(s)	264, 307, 600
Bse8I	GATNNNNATC	1 cut(s)	236
BseBI	CCWGG	1 cut(s)	601
BseDI	CCNNGG	3 cut(s)	264, 307, 600
BseGI	GGATG	5 cut(s)	99, 117, 144, 218, 458
BseJI	GATNNNNATC	1 cut(s)	236
BseMII	CTCAG	3 cut(s)	820, 825, 855
BseRI	GAGGAG	2 cut(s)	128, 782
BseXI	GCAGC	1 cut(s)	525
BshFI	GGCC	6 cut(s)	79, 95, 332, 423, 524, 770
BsiHKAI	GWGCWC	3 cut(s)	258, 306, 842
BsiHKCI	CYCGRG	1 cut(s)	815
BsiSI	CCGG	3 cut(s)	39, 80, 521
BsnI	GGCC	6 cut(s)	79, 95, 332, 423, 524, 770
BsoBI	CYCGRG	1 cut(s)	815
Bsp119I	TTCGAA	1 cut(s)	586
Bsp1286I	GDGCHC	3 cut(s)	258, 306, 842
Bsp1407I	TGTACA	1 cut(s)	396
Bsp143I	GATC	3 cut(s)	231, 624, 732
Bsp19I	CCATGG	1 cut(s)	264
BspACI	CCGC	3 cut(s)	103, 411, 767
BspANI	GGCC	6 cut(s)	79, 95, 332, 423, 524, 770
BspCNI	CTCAG	3 cut(s)	819, 826, 854
BspLI	GGNNCC	1 cut(s)	444
BspPI	GGATC	1 cut(s)	632
BspT104I	TTCGAA	1 cut(s)	586
BsrGI	TGTACA	1 cut(s)	396
BssECI	CCNNGG	3 cut(s)	264, 307, 600
BssMI	GATC	3 cut(s)	231, 624, 732
BssT1I	CCWWGG	2 cut(s)	264, 307
Bst2UI	CCWGG	1 cut(s)	601
Bst4CI	ACNGT	2 cut(s)	12, 163
BstAUI	TGTACA	1 cut(s)	396
BstBAI	YACGTR	1 cut(s)	301
BstBI	TTCGAA	1 cut(s)	586
BstC8I	GCNNGC	1 cut(s)	468
BstDEI	CTNAG	4 cut(s)	383, 806, 834, 841
BstDSI	CCRYGG	1 cut(s)	264
BstF5I	GGATG	5 cut(s)	99, 117, 144, 218, 458
BstHHI	GCGC	1 cut(s)	410
BstKTI	GATC	3 cut(s)	234, 627, 735
BstMBI	GATC	3 cut(s)	231, 624, 732
BstMWI	GCNNNNNNNGC	2 cut(s)	472, 538
BstNI	CCWGG	1 cut(s)	601
BstNSI	RCATGY	1 cut(s)	517
BstSCI	CCNGG	2 cut(s)	519, 599
BstV1I	GCAGC	1 cut(s)	525
BstV2I	GAAGAC	1 cut(s)	11
BstX2I	RGATCY	1 cut(s)	624
BstYI	RGATCY	1 cut(s)	624
BsuRI	GGCC	6 cut(s)	79, 95, 332, 423, 524, 770
BtgI	CCRYGG	1 cut(s)	264
BtsCI	GGATG	5 cut(s)	99, 117, 144, 218, 458
BtsI	GCAGTG	1 cut(s)	559
BtsIMutI	CAGTG	1 cut(s)	559
Cac8I	GCNNGC	1 cut(s)	468
CfoI	GCGC	1 cut(s)	410
Cfr13I	GGNCC	4 cut(s)	93, 331, 443, 787
Csp6I	GTAC	4 cut(s)	397, 517, 748, 757
CviAII	CATG	5 cut(s)	265, 337, 425, 514, 716
CviQI	GTAC	4 cut(s)	397, 517, 748, 757
DdeI	CTNAG	4 cut(s)	383, 806, 834, 841
DpnI	GATC	3 cut(s)	233, 626, 734
DpnII	GATC	3 cut(s)	231, 624, 732
DraI	TTTAAA	1 cut(s)	595
EaeI	YGGCCR	1 cut(s)	768
Ecl136II	GAGCTC	1 cut(s)	840
Eco130I	CCWWGG	2 cut(s)	264, 307
Eco24I	GRGCYC	1 cut(s)	842
Eco47I	GGWCC	2 cut(s)	443, 787
Eco53kI	GAGCTC	1 cut(s)	840
Eco88I	CYCGRG	1 cut(s)	815
EcoICRI	GAGCTC	1 cut(s)	840
EcoO109I	RGGNCCY	2 cut(s)	331, 443
EcoRII	CCWGG	1 cut(s)	599
EcoT14I	CCWWGG	2 cut(s)	264, 307
EcoT38I	GRGCYC	1 cut(s)	842
ErhI	CCWWGG	2 cut(s)	264, 307
FaeI	CATG	5 cut(s)	268, 340, 428, 517, 719
FatI	CATG	5 cut(s)	264, 336, 424, 513, 715
FauNDI	CATATG	2 cut(s)	620, 666
FbaI	TGATCA	1 cut(s)	732
FblI	GTMKAC	1 cut(s)	165
Fnu4HI	GCNGC	3 cut(s)	411, 539, 768
FokI	GGATG	5 cut(s)	86, 104, 131, 225, 445
FriOI	GRGCYC	1 cut(s)	842
Fsp4HI	GCNGC	3 cut(s)	411, 539, 768
FspBI	CTAG	2 cut(s)	528, 660
GlaI	GCGC	1 cut(s)	409
GluI	GCNGC	3 cut(s)	411, 539, 768
HaeIII	GGCC	6 cut(s)	79, 95, 332, 423, 524, 770
HapII	CCGG	3 cut(s)	39, 80, 521
HhaI	GCGC	1 cut(s)	410
Hin1II	CATG	5 cut(s)	268, 340, 428, 517, 719
Hin6I	GCGC	1 cut(s)	408
HinP1I	GCGC	1 cut(s)	408
HinfI	GANTC	1 cut(s)	361
HpaII	CCGG	3 cut(s)	39, 80, 521
HphI	GGTGA	4 cut(s)	115, 133, 232, 278
Hpy166II	GTNNAC	2 cut(s)	166, 399
Hpy188I	TCNGA	6 cut(s)	132, 212, 222, 344, 390, 844
Hpy188III	TCNNGA	1 cut(s)	815
Hpy8I	GTNNAC	2 cut(s)	166, 399
Hpy99I	CGWCG	2 cut(s)	158, 263
HpyAV	CCTTC	2 cut(s)	72, 106
HpyCH4III	ACNGT	2 cut(s)	12, 163
HpyCH4IV	ACGT	1 cut(s)	300
HpyCH4V	TGCA	4 cut(s)	179, 458, 513, 634
HpyF10VI	GCNNNNNNNGC	2 cut(s)	472, 538
HpyF3I	CTNAG	4 cut(s)	383, 806, 834, 841
HpySE526I	ACGT	1 cut(s)	300
Hsp92II	CATG	5 cut(s)	268, 340, 428, 517, 719
HspAI	GCGC	1 cut(s)	408
Ksp22I	TGATCA	1 cut(s)	732
Kzo9I	GATC	3 cut(s)	231, 624, 732
LmnI	GCTCC	2 cut(s)	41, 309
Lsp1109I	GCAGC	1 cut(s)	525
LweI	GCATC	3 cut(s)	467, 820, 838
MaeI	CTAG	2 cut(s)	528, 660
MaeII	ACGT	1 cut(s)	300
MalI	GATC	3 cut(s)	233, 626, 734
MboI	GATC	3 cut(s)	231, 624, 732
MboII	GAAGA	1 cut(s)	16
MflI	RGATCY	1 cut(s)	624
MhlI	GDGCHC	3 cut(s)	258, 306, 842
MluCI	AATT	7 cut(s)	295, 508, 544, 550, 577, 589, 728
MmeI	TCCRAC	1 cut(s)	322
MroXI	GAANNNNTTC	1 cut(s)	554
MseI	TTAA	6 cut(s)	171, 507, 543, 594, 606, 853
MslI	CAYNNNNRTG	1 cut(s)	619
MspI	CCGG	3 cut(s)	39, 80, 521
MspR9I	CCNGG	2 cut(s)	521, 601
MvaI	CCWGG	1 cut(s)	601
MwoI	GCNNNNNNNGC	2 cut(s)	472, 538
NciI	CCSGG	1 cut(s)	521
NcoI	CCATGG	1 cut(s)	264
NdeI	CATATG	2 cut(s)	620, 666
NdeII	GATC	3 cut(s)	231, 624, 732
NlaIII	CATG	5 cut(s)	268, 340, 428, 517, 719
NlaIV	GGNNCC	1 cut(s)	444
NspI	RCATGY	1 cut(s)	517
NspV	TTCGAA	1 cut(s)	586
PaeR7I	CTCGAG	1 cut(s)	815
PcsI	WCGNNNNNNNCGW	1 cut(s)	159
PdmI	GAANNNNTTC	1 cut(s)	554
PfeI	GAWTC	1 cut(s)	361
PkrI	GCNGC	3 cut(s)	412, 540, 769
Ppu21I	YACGTR	1 cut(s)	301
PpuMI	RGGWCCY	1 cut(s)	443
Psp124BI	GAGCTC	1 cut(s)	842
Psp5II	RGGWCCY	1 cut(s)	443
Psp6I	CCWGG	1 cut(s)	599
PspGI	CCWGG	1 cut(s)	599
PspN4I	GGNNCC	1 cut(s)	444
PspPI	GGNCC	4 cut(s)	93, 331, 443, 787
PspPPI	RGGWCCY	1 cut(s)	443
PsuI	RGATCY	1 cut(s)	624
RsaI	GTAC	4 cut(s)	398, 518, 749, 758
RsaNI	GTAC	4 cut(s)	397, 517, 748, 757
RseI	CAYNNNNRTG	1 cut(s)	619
SacI	GAGCTC	1 cut(s)	842
SaqAI	TTAA	6 cut(s)	171, 507, 543, 594, 606, 853
SatI	GCNGC	3 cut(s)	411, 539, 768
Sau3AI	GATC	3 cut(s)	231, 624, 732
Sau96I	GGNCC	4 cut(s)	93, 331, 443, 787
ScrFI	CCNGG	2 cut(s)	521, 601
SduI	GDGCHC	3 cut(s)	258, 306, 842
SfaNI	GCATC	3 cut(s)	467, 820, 838
Sfr274I	CTCGAG	1 cut(s)	815
SfuI	TTCGAA	1 cut(s)	586
SinI	GGWCC	2 cut(s)	443, 787
SlaI	CTCGAG	1 cut(s)	815
SmiMI	CAYNNNNRTG	1 cut(s)	619
SmlI	CTYRAG	1 cut(s)	815
SmoI	CTYRAG	1 cut(s)	815
SpeI	ACTAGT	1 cut(s)	659
Sse9I	AATT	7 cut(s)	295, 508, 544, 550, 577, 589, 728
SsiI	CCGC	3 cut(s)	103, 411, 767
SspMI	CTAG	2 cut(s)	528, 660
SstI	GAGCTC	1 cut(s)	842
StyD4I	CCNGG	2 cut(s)	519, 599
StyI	CCWWGG	2 cut(s)	264, 307
TaaI	ACNGT	2 cut(s)	12, 163
TaiI	ACGT	1 cut(s)	303
TaqI	TCGA	5 cut(s)	65, 198, 586, 774, 816
TasI	AATT	7 cut(s)	295, 508, 544, 550, 577, 589, 728
TatI	WGTACW	2 cut(s)	396, 756
TauI	GCSGC	2 cut(s)	413, 770
TfiI	GAWTC	1 cut(s)	361
Tru1I	TTAA	6 cut(s)	171, 507, 543, 594, 606, 853
Tru9I	TTAA	6 cut(s)	171, 507, 543, 594, 606, 853
TscAI	CASTG	1 cut(s)	566
TseI	GCWGC	1 cut(s)	538
TspDTI	ATGAA	5 cut(s)	17, 88, 607, 741, 839
TspRI	CASTG	1 cut(s)	566
VpaK11BI	GGWCC	2 cut(s)	443, 787
XapI	RAATTY	2 cut(s)	550, 589
XceI	RCATGY	1 cut(s)	517
XhoI	CTCGAG	1 cut(s)	815
XmiI	GTMKAC	1 cut(s)	165
XmnI	GAANNNNTTC	1 cut(s)	554
XspI	CTAG	2 cut(s)	528, 660

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.