Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000007

Orthogroup ID

OG0006198

Physical Location & Seq

Genomic Coordinates Reverse (-)

16791122 .. 16792735

Gene Structure 1614 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_7G00177280.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 729 bp

ATGTGGAGCCAACCCTACCGGAAAGATGACTTGGAGTCCGGATCCCGGCCGCTCTACCCCATGATGCTCGAGAGCCCCGAGCTCCGATGGTCCTTTATCCGCAAAATCTACTCCATCATCGCCGTCCAACTGCTCGTCACCATCGCCGTCGCCGCCACCGTCGTCTCTTACCACCCGATTGCAAACTTCTTCGTCAGTACCGGCGCCGGCTTGGCCCTCTACATAGTCCTCATCATCATTCCCTTCATCGTGTTGTGCCCGCTGTATTATTACCACCAGAGGCATCCTGTGAATTACCTCCTGCTTGGGATTTTCACCATCTCTCTTGCCTTTGTGGTGGGATTGACTTGCGCTTTTACTAGCGGTAAGGTTATTTTGGAGTCTGTGATACTCACCGTTGTGGTTGTAATTGCTCTCACCCTGTACACATTTTGGGCTGCAAGGAGAGGCCATGATTTCAATTTTCTTGGTCCTTTCTTGGCTGGAGCATTGCTCGTTCTCATTGTGTTTTCTCTGATTCAGGTTTTCTTCCCTCTGGGTAAGCTCTCAGTGATGATATACGGGTGCTTGGCATCGATCATCTTTTGTGGATACATTGTGTATGACACAGACAATCTCATCAAGCGCTACTCTTACGACGAGTACATTTGGGCTGCGGTCTCGTTGTATTTGGATATCATTAACCTGTTCCTTGCTTTGCTCACTATTTTCAGAAGTGTTGATAGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000902 GO:0006950 GO:0006952 GO:0007154 GO:0007165 GO:0008150 GO:0009605 GO:0009607 GO:0009620 GO:0009653 GO:0009719 GO:0009725 GO:0009741 GO:0009742 GO:0009755 GO:0009826 GO:0009987 GO:0010033 GO:0010941 GO:0014070 GO:0016043 GO:0016049 GO:0022603 GO:0023052 GO:0032502 GO:0032870 GO:0032989 GO:0033993 GO:0040007 GO:0042221 GO:0043207 GO:0043401 GO:0048519 GO:0048523 GO:0048545 GO:0048589 GO:0048856 GO:0048869 GO:0050789 GO:0050793 GO:0050794 GO:0050832 GO:0050896 GO:0051239 GO:0051704 GO:0051707 GO:0051716 GO:0060548 GO:0060560 GO:0065007 GO:0070887 GO:0071310 GO:0071367 GO:0071383 GO:0071396 GO:0071407 GO:0071495 GO:0071840 GO:0098542 GO:1901700 GO:1901701 GO:1905421 GO:2000026

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Bax1-I

Protein Analysis

242

Amino Acids

27.34

Weight (kDa)

7.65

Isoelectric Point (pI)

26.26

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Bax1-I	PF01027	31 - 237	3.9e-49	Inhibitor of apoptosis-promoting Bax1

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006198)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G03070 AT1G03070 AT1G03070 AT3G63310 AT4G02690 AT4G02690
fragaria_vesca	FvH4_2g23060 FvH4_2g24870
malus_domestica	MD03G1259200.v1.1 MD11G1279800.v1.1
prunus_persica	Prupe.8G235700_v2.0.a1
pyrus_communis	pycom03g20700 pycom11g24750
rosa_chinensis	RchiOBHm_Chr6g0290161 RchiOBHm_Chr6g0292711
rosa_laevigata	RLG00000011997 RLG00000012236
rosa_multiflora	Rmu_co8443445.1_g000001 Rmu_sc0002902.1_g000017
rosa_roxburghii	Rroxscaffold_7G00174750 Rroxscaffold_7G00177280
rosa_rugosa	Rorug06G0210500 Rorug06G0229200
rosa_samantha	Rh6BG349700 Rh6DG321200
rosa_wichuraiana	Rw6G027730 Rw6G029870

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	203
AccBSI	CCGCTC	1 cut(s)	52
AccIII	TCCGGA	1 cut(s)	38
AciI	CCGC	6 cut(s)	50, 100, 153, 260, 363, 656
AclWI	GGATC	2 cut(s)	36, 49
AcoI	YGGCCR	1 cut(s)	47
AcyI	GRCGYC	1 cut(s)	204
AfaI	GTAC	3 cut(s)	199, 425, 644
AfeI	AGCGCT	1 cut(s)	626
AfiI	CCNNNNNNNGG	1 cut(s)	45
AgsI	TTSAA	1 cut(s)	460
AhdI	GACNNNNNGTC	1 cut(s)	34
AjuI	GAANNNNNNNTTGG	2 cut(s)	14, 46
AleI	CACNNNNGTG	1 cut(s)	398
AluBI	AGCT	3 cut(s)	82, 544, 726
AluI	AGCT	3 cut(s)	82, 544, 726
Alw21I	GWGCWC	1 cut(s)	84
Alw26I	GTCTC	2 cut(s)	169, 664
AlwI	GGATC	2 cut(s)	36, 49
Ama87I	CYCGRG	2 cut(s)	68, 77
Aor13HI	TCCGGA	1 cut(s)	38
Aor51HI	AGCGCT	1 cut(s)	626
AoxI	GGCC	3 cut(s)	47, 213, 448
ApeKI	GCWGC	2 cut(s)	437, 653
AspLEI	GCGC	3 cut(s)	206, 353, 627
AspS9I	GGNCC	3 cut(s)	90, 214, 470
AsuC2I	CCSGG	1 cut(s)	46
AsuHPI	GGTGA	4 cut(s)	130, 307, 385, 409
AvaI	CYCGRG	2 cut(s)	68, 77
AvaII	GGWCC	2 cut(s)	90, 470
BaeGI	GKGCMC	1 cut(s)	260
BamHI	GGATCC	1 cut(s)	41
BanI	GGYRCC	1 cut(s)	203
BanII	GRGCYC	2 cut(s)	77, 84
Bbv12I	GWGCWC	1 cut(s)	84
BbvI	GCAGC	2 cut(s)	424, 640
BccI	CCATC	4 cut(s)	81, 122, 149, 326
BceAI	ACGGC	2 cut(s)	107, 131
BciVI	GTATCC	1 cut(s)	584
BcnI	CCSGG	1 cut(s)	46
BcoDI	GTCTC	2 cut(s)	169, 664
BfaI	CTAG	1 cut(s)	360
BfoI	RGCGCY	2 cut(s)	207, 628
BfuI	GTATCC	1 cut(s)	584
BglI	GCCNNNNNGGC	1 cut(s)	212
BisI	GCNGC	4 cut(s)	50, 153, 438, 654
BlsI	GCNGC	4 cut(s)	51, 154, 439, 655
Bme1390I	CCNGG	1 cut(s)	46
Bme18I	GGWCC	2 cut(s)	90, 470
BmeRI	GACNNNNNGTC	1 cut(s)	34
BmeT110I	CYCGRG	2 cut(s)	68, 77
BmgT120I	GGNCC	3 cut(s)	90, 214, 470
BmiI	GGNNCC	3 cut(s)	8, 43, 205
BmrFI	CCNGG	1 cut(s)	46
BmsI	GCATC	3 cut(s)	54, 292, 581
BplI	GAGNNNNNCTC	2 cut(s)	477, 509
BpmI	CTGGAG	1 cut(s)	504
BpuMI	CCSGG	1 cut(s)	46
Bsa29I	ATCGAT	1 cut(s)	575
BsaHI	GRCGYC	1 cut(s)	204
BsaI	GGTCTC	1 cut(s)	664
BsaWI	WCCGGW	2 cut(s)	18, 38
Bsc4I	CCNNNNNNNGG	1 cut(s)	45
Bse118I	RCCGGY	2 cut(s)	200, 206
Bse3DI	GCAATG	1 cut(s)	488
BseAI	TCCGGA	1 cut(s)	38
BseCI	ATCGAT	1 cut(s)	575
BseGI	GGATG	1 cut(s)	283
BseLI	CCNNNNNNNGG	1 cut(s)	45
BseMI	GCAATG	1 cut(s)	488
BseMII	CTCAG	1 cut(s)	561
BseSI	GKGCMC	1 cut(s)	260
BseX3I	CGGCCG	1 cut(s)	47
BseXI	GCAGC	2 cut(s)	424, 640
Bsh1285I	CGRYCG	1 cut(s)	50
BshFI	GGCC	3 cut(s)	49, 215, 450
BshNI	GGYRCC	1 cut(s)	203
BshVI	ATCGAT	1 cut(s)	575
BsiEI	CGRYCG	1 cut(s)	50
BsiHKAI	GWGCWC	1 cut(s)	84
BsiHKCI	CYCGRG	2 cut(s)	68, 77
BsiSI	CCGG	5 cut(s)	19, 39, 46, 201, 207
BslI	CCNNNNNNNGG	1 cut(s)	45
BsmAI	GTCTC	2 cut(s)	169, 664
BsmBI	CGTCTC	1 cut(s)	169
BsnI	GGCC	3 cut(s)	49, 215, 450
Bso31I	GGTCTC	1 cut(s)	664
BsoBI	CYCGRG	2 cut(s)	68, 77
Bsp1286I	GDGCHC	3 cut(s)	77, 84, 260
Bsp13I	TCCGGA	1 cut(s)	38
Bsp1407I	TGTACA	1 cut(s)	423
Bsp143I	GATC	2 cut(s)	41, 576
BspACI	CCGC	6 cut(s)	50, 100, 153, 260, 363, 656
BspANI	GGCC	3 cut(s)	49, 215, 450
BspCNI	CTCAG	1 cut(s)	560
BspDI	ATCGAT	1 cut(s)	575
BspEI	TCCGGA	1 cut(s)	38
BspLI	GGNNCC	3 cut(s)	8, 43, 205
BspPI	GGATC	2 cut(s)	36, 49
BspT107I	GGYRCC	1 cut(s)	203
BspTNI	GGTCTC	1 cut(s)	664
BsrBI	CCGCTC	1 cut(s)	52
BsrDI	GCAATG	1 cut(s)	488
BsrFI	RCCGGY	2 cut(s)	200, 206
BsrGI	TGTACA	1 cut(s)	423
BssAI	RCCGGY	2 cut(s)	200, 206
BssMI	GATC	2 cut(s)	41, 576
BssNI	GRCGYC	1 cut(s)	204
Bst4CI	ACNGT	2 cut(s)	160, 397
BstACI	GRCGYC	1 cut(s)	204
BstAUI	TGTACA	1 cut(s)	423
BstC8I	GCNNGC	2 cut(s)	208, 260
BstDEI	CTNAG	1 cut(s)	547
BstF5I	GGATG	1 cut(s)	283
BstH2I	RGCGCY	2 cut(s)	207, 628
BstHHI	GCGC	3 cut(s)	206, 353, 627
BstKTI	GATC	2 cut(s)	44, 579
BstMAI	GTCTC	2 cut(s)	169, 664
BstMBI	GATC	2 cut(s)	41, 576
BstMCI	CGRYCG	1 cut(s)	50
BstMWI	GCNNNNNNNGC	2 cut(s)	152, 212
BstSCI	CCNGG	1 cut(s)	44
BstSLI	GKGCMC	1 cut(s)	260
BstV1I	GCAGC	2 cut(s)	424, 640
BstX2I	RGATCY	1 cut(s)	41
BstYI	RGATCY	1 cut(s)	41
BstZI	CGGCCG	1 cut(s)	47
Bsu15I	ATCGAT	1 cut(s)	575
BsuI	GTATCC	1 cut(s)	584
BsuRI	GGCC	3 cut(s)	49, 215, 450
BsuTUI	ATCGAT	1 cut(s)	575
BtgZI	GCGATG	2 cut(s)	103, 127
BtsCI	GGATG	1 cut(s)	283
BtsIMutI	CAGTG	1 cut(s)	555
Cac8I	GCNNGC	2 cut(s)	208, 260
CfoI	GCGC	3 cut(s)	206, 353, 627
Cfr10I	RCCGGY	2 cut(s)	200, 206
Cfr13I	GGNCC	3 cut(s)	90, 214, 470
ClaI	ATCGAT	1 cut(s)	575
Csp6I	GTAC	3 cut(s)	198, 424, 643
CviAII	CATG	2 cut(s)	61, 452
CviQI	GTAC	3 cut(s)	198, 424, 643
DdeI	CTNAG	1 cut(s)	547
DinI	GGCGCC	1 cut(s)	205
DpnI	GATC	2 cut(s)	43, 578
DpnII	GATC	2 cut(s)	41, 576
DriI	GACNNNNNGTC	1 cut(s)	34
EaeI	YGGCCR	1 cut(s)	47
EagI	CGGCCG	1 cut(s)	47
Eam1105I	GACNNNNNGTC	1 cut(s)	34
Ecl136II	GAGCTC	1 cut(s)	82
EclXI	CGGCCG	1 cut(s)	47
Eco24I	GRGCYC	2 cut(s)	77, 84
Eco31I	GGTCTC	1 cut(s)	664
Eco32I	GATATC	1 cut(s)	676
Eco47I	GGWCC	2 cut(s)	90, 470
Eco47III	AGCGCT	1 cut(s)	626
Eco52I	CGGCCG	1 cut(s)	47
Eco53kI	GAGCTC	1 cut(s)	82
Eco88I	CYCGRG	2 cut(s)	68, 77
EcoICRI	GAGCTC	1 cut(s)	82
EcoRV	GATATC	1 cut(s)	676
EcoT38I	GRGCYC	2 cut(s)	77, 84
EgeI	GGCGCC	1 cut(s)	205
EheI	GGCGCC	1 cut(s)	205
Esp3I	CGTCTC	1 cut(s)	169
FaeI	CATG	2 cut(s)	64, 455
FaiI	YATR	5 cut(s)	62, 224, 453, 559, 603
FatI	CATG	2 cut(s)	60, 451
FauI	CCCGC	1 cut(s)	267
Fnu4HI	GCNGC	4 cut(s)	50, 153, 438, 654
FokI	GGATG	1 cut(s)	270
FriOI	GRGCYC	2 cut(s)	77, 84
Fsp4HI	GCNGC	4 cut(s)	50, 153, 438, 654
FspBI	CTAG	1 cut(s)	360
GlaI	GCGC	3 cut(s)	205, 352, 626
GluI	GCNGC	4 cut(s)	50, 153, 438, 654
GsuI	CTGGAG	1 cut(s)	504
HaeII	RGCGCY	2 cut(s)	207, 628
HaeIII	GGCC	3 cut(s)	49, 215, 450
HapII	CCGG	5 cut(s)	19, 39, 46, 201, 207
HhaI	GCGC	3 cut(s)	206, 353, 627
Hin1I	GRCGYC	1 cut(s)	204
Hin1II	CATG	2 cut(s)	64, 455
Hin6I	GCGC	3 cut(s)	204, 351, 625
HinP1I	GCGC	3 cut(s)	204, 351, 625
HinfI	GANTC	3 cut(s)	35, 380, 517
HpaII	CCGG	5 cut(s)	19, 39, 46, 201, 207
HphI	GGTGA	4 cut(s)	130, 307, 385, 409
Hpy166II	GTNNAC	1 cut(s)	426
Hpy188I	TCNGA	3 cut(s)	86, 516, 713
Hpy188III	TCNNGA	2 cut(s)	39, 70
Hpy8I	GTNNAC	1 cut(s)	426
Hpy99I	CGWCG	3 cut(s)	152, 164, 641
HpyAV	CCTTC	1 cut(s)	253
HpyCH4III	ACNGT	2 cut(s)	160, 397
HpyCH4V	TGCA	2 cut(s)	182, 440
HpyF10VI	GCNNNNNNNGC	2 cut(s)	152, 212
HpyF3I	CTNAG	1 cut(s)	547
Hsp92I	GRCGYC	1 cut(s)	204
Hsp92II	CATG	2 cut(s)	64, 455
HspAI	GCGC	3 cut(s)	204, 351, 625
KasI	GGCGCC	1 cut(s)	203
Kpn2I	TCCGGA	1 cut(s)	38
KroI	GCCGGC	1 cut(s)	206
KroNI	GCCGGC	1 cut(s)	208
Kzo9I	GATC	2 cut(s)	41, 576
LmnI	GCTCC	3 cut(s)	6, 87, 485
Lsp1109I	GCAGC	2 cut(s)	424, 640
LweI	GCATC	3 cut(s)	54, 292, 581
MaeI	CTAG	1 cut(s)	360
MaeIII	GTNAC	1 cut(s)	136
MalI	GATC	2 cut(s)	43, 578
MbiI	CCGCTC	1 cut(s)	52
MboI	GATC	2 cut(s)	41, 576
MboII	GAAGA	2 cut(s)	181, 520
MflI	RGATCY	1 cut(s)	41
MhlI	GDGCHC	3 cut(s)	77, 84, 260
MluCI	AATT	3 cut(s)	292, 408, 460
Mly113I	GGCGCC	1 cut(s)	204
MlyI	GAGTC	2 cut(s)	44, 389
MmeI	TCCRAC	1 cut(s)	151
MnlI	CCTC	6 cut(s)	227, 239, 273, 308, 440, 543
MroI	TCCGGA	1 cut(s)	38
MroNI	GCCGGC	1 cut(s)	206
MseI	TTAA	1 cut(s)	681
MslI	CAYNNNNRTG	1 cut(s)	398
MspA1I	CMGCKG	1 cut(s)	262
MspI	CCGG	5 cut(s)	19, 39, 46, 201, 207
MspR9I	CCNGG	1 cut(s)	46
MwoI	GCNNNNNNNGC	2 cut(s)	152, 212
NaeI	GCCGGC	1 cut(s)	208
NarI	GGCGCC	1 cut(s)	204
NciI	CCSGG	1 cut(s)	46
NdeII	GATC	2 cut(s)	41, 576
NgoMIV	GCCGGC	1 cut(s)	206
NlaIII	CATG	2 cut(s)	64, 455
NlaIV	GGNNCC	3 cut(s)	8, 43, 205
NmuCI	GTSAC	1 cut(s)	136
OliI	CACNNNNGTG	1 cut(s)	398
PaeR7I	CTCGAG	1 cut(s)	68
PcsI	WCGNNNNNNNCGW	2 cut(s)	75, 156
PdiI	GCCGGC	1 cut(s)	208
PfeI	GAWTC	1 cut(s)	517
PkrI	GCNGC	4 cut(s)	51, 154, 439, 655
PleI	GAGTC	2 cut(s)	43, 388
PluTI	GGCGCC	1 cut(s)	207
PpsI	GAGTC	2 cut(s)	43, 388
Psp124BI	GAGCTC	1 cut(s)	84
PspN4I	GGNNCC	3 cut(s)	8, 43, 205
PspPI	GGNCC	3 cut(s)	90, 214, 470
PsuI	RGATCY	1 cut(s)	41
RsaI	GTAC	3 cut(s)	199, 425, 644
RsaNI	GTAC	3 cut(s)	198, 424, 643
RseI	CAYNNNNRTG	1 cut(s)	398
SacI	GAGCTC	1 cut(s)	84
SaqAI	TTAA	1 cut(s)	681
SatI	GCNGC	4 cut(s)	50, 153, 438, 654
Sau3AI	GATC	2 cut(s)	41, 576
Sau96I	GGNCC	3 cut(s)	90, 214, 470
SchI	GAGTC	2 cut(s)	44, 389
ScrFI	CCNGG	1 cut(s)	46
SduI	GDGCHC	3 cut(s)	77, 84, 260
SetI	ASST	7 cut(s)	84, 300, 372, 525, 546, 687, 728
SfaNI	GCATC	3 cut(s)	54, 292, 581
SfoI	GGCGCC	1 cut(s)	205
Sfr274I	CTCGAG	1 cut(s)	68
SinI	GGWCC	2 cut(s)	90, 470
SlaI	CTCGAG	1 cut(s)	68
SmiMI	CAYNNNNRTG	1 cut(s)	398
SmlI	CTYRAG	1 cut(s)	68
SmoI	CTYRAG	1 cut(s)	68
Sse9I	AATT	3 cut(s)	292, 408, 460
SsiI	CCGC	6 cut(s)	50, 100, 153, 260, 363, 656
SspDI	GGCGCC	1 cut(s)	203
SspMI	CTAG	1 cut(s)	360
SstI	GAGCTC	1 cut(s)	84
StyD4I	CCNGG	1 cut(s)	44
TaaI	ACNGT	2 cut(s)	160, 397
TaqI	TCGA	2 cut(s)	69, 575
TasI	AATT	3 cut(s)	292, 408, 460
TatI	WGTACW	2 cut(s)	423, 642
TauI	GCSGC	2 cut(s)	52, 155
TfiI	GAWTC	1 cut(s)	517
Tru1I	TTAA	1 cut(s)	681
Tru9I	TTAA	1 cut(s)	681
TscAI	CASTG	1 cut(s)	555
TseFI	GTSAC	1 cut(s)	136
TseI	GCWGC	2 cut(s)	437, 653
Tsp45I	GTSAC	1 cut(s)	136
TspDTI	ATGAA	1 cut(s)	235
TspRI	CASTG	1 cut(s)	555
VpaK11BI	GGWCC	2 cut(s)	90, 470
XhoI	CTCGAG	1 cut(s)	68
XspI	CTAG	1 cut(s)	360

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.