Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0006198

Physical Location & Seq

Genomic Coordinates Reverse (-)

33489157 .. 33489759

Gene Structure 603 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0210500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 603 bp

ATGACAGTAGCTGAGTATCAAGGTAAATTTGAGGAATTAATGCGATTTTCTCCTGGAATTATACCAAACGAGACTGCTAAAGCAAAGAAATTTGAGGATGGACGTAATCCCGAGATTAGAGAGAAAGTGTCTATTTTGAAGCTCCAAAAGTATTCTGAAGTGGTTGATCGAGCACTTATAGCTGAACAAAGTATCATAGGGAGTAAGTCAACTTGGAAGCCTATGAACTTGCATGAAGGTTATAGTGATAAGCATCCGAAAGTTAATTCACATGAATATCATGGGCAGCAGCAAGCTAGGTCATTTGGAGTAAGTCATGACCCACCACTACGTTATTACTGCAAAGAGGTTGGACACATTAAGAGGTATTGCCCAAAATTTCATCCATACCAAACATTGCAAGTACCAAAACCACAGTATCGTATTCCTATACAACCTCAACAAAATTGGCCAAGACAAACTGCTAGTCAACAACCACAACAGCAAGGAGGACCATTTATACAAGCTAAGCCTAATGGAAGGGCACCTGCAAGACAATTGGGACAACCTTCACAAGGACAAGTGTACGGTTTTGGTCAAGTGAGTGGACAGACTAAATCCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000902 GO:0006950 GO:0006952 GO:0007154 GO:0007165 GO:0008150 GO:0009605 GO:0009607 GO:0009620 GO:0009653 GO:0009719 GO:0009725 GO:0009741 GO:0009742 GO:0009755 GO:0009826 GO:0009987 GO:0010033 GO:0010941 GO:0014070 GO:0016043 GO:0016049 GO:0022603 GO:0023052 GO:0032502 GO:0032870 GO:0032989 GO:0033993 GO:0040007 GO:0042221 GO:0043207 GO:0043401 GO:0048519 GO:0048523 GO:0048545 GO:0048589 GO:0048856 GO:0048869 GO:0050789 GO:0050793 GO:0050794 GO:0050832 GO:0050896 GO:0051239 GO:0051704 GO:0051707 GO:0051716 GO:0060548 GO:0060560 GO:0065007 GO:0070887 GO:0071310 GO:0071367 GO:0071383 GO:0071396 GO:0071407 GO:0071495 GO:0071840 GO:0098542 GO:1901700 GO:1901701 GO:1905421 GO:2000026

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Bax1-I

Protein Analysis

200

Amino Acids

22.84

Weight (kDa)

9.72

Isoelectric Point (pI)

41.57

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006198)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G03070 AT1G03070 AT1G03070 AT3G63310 AT4G02690 AT4G02690
fragaria_vesca	FvH4_2g23060 FvH4_2g24870
malus_domestica	MD03G1259200.v1.1 MD11G1279800.v1.1
prunus_persica	Prupe.8G235700_v2.0.a1
pyrus_communis	pycom03g20700 pycom11g24750
rosa_chinensis	RchiOBHm_Chr6g0290161 RchiOBHm_Chr6g0292711
rosa_laevigata	RLG00000011997 RLG00000012236
rosa_multiflora	Rmu_co8443445.1_g000001 Rmu_sc0002902.1_g000017
rosa_roxburghii	Rroxscaffold_7G00174750 Rroxscaffold_7G00177280
rosa_rugosa	Rorug06G0210500 Rorug06G0229200
rosa_samantha	Rh6BG349700 Rh6DG321200
rosa_wichuraiana	Rw6G027730 Rw6G029870

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	535
Acc36I	ACCTGC	1 cut(s)	535
AccB1I	GGYRCC	1 cut(s)	523
AcoI	YGGCCR	1 cut(s)	449
AcsI	RAATTY	3 cut(s)	26, 89, 377
AcuI	CTGAAG	1 cut(s)	177
AfaI	GTAC	2 cut(s)	405, 566
AfiI	CCNNNNNNNGG	1 cut(s)	554
AgsI	TTSAA	1 cut(s)	139
AjnI	CCWGG	1 cut(s)	52
AluBI	AGCT	5 cut(s)	11, 142, 182, 296, 506
AluI	AGCT	5 cut(s)	11, 142, 182, 296, 506
Alw21I	GWGCWC	1 cut(s)	175
Alw26I	GTCTC	1 cut(s)	65
AlwNI	CAGNNNCTG	1 cut(s)	11
Ama87I	CYCGRG	1 cut(s)	110
AoxI	GGCC	1 cut(s)	449
ApeKI	GCWGC	2 cut(s)	286, 289
ApoI	RAATTY	3 cut(s)	26, 89, 377
ArsI	GACNNNNNNTTYG	2 cut(s)	451, 483
AseI	ATTAAT	1 cut(s)	38
AspS9I	GGNCC	1 cut(s)	491
AvaI	CYCGRG	1 cut(s)	110
AvaII	GGWCC	1 cut(s)	491
BaeGI	GKGCMC	1 cut(s)	526
BaeI	ACNNNNGTAYC	2 cut(s)	401, 434
BalI	TGGCCA	1 cut(s)	451
BanI	GGYRCC	1 cut(s)	523
Bbv12I	GWGCWC	1 cut(s)	175
BbvI	GCAGC	2 cut(s)	298, 301
BccI	CCATC	1 cut(s)	92
BciT130I	CCWGG	1 cut(s)	54
BcoDI	GTCTC	1 cut(s)	65
BfaI	CTAG	2 cut(s)	297, 465
BfuAI	ACCTGC	1 cut(s)	535
BisI	GCNGC	2 cut(s)	287, 290
BlpI	GCTNAGC	1 cut(s)	507
BlsI	GCNGC	2 cut(s)	288, 291
Bme1390I	CCNGG	1 cut(s)	54
Bme18I	GGWCC	1 cut(s)	491
BmeT110I	CYCGRG	1 cut(s)	110
BmgT120I	GGNCC	1 cut(s)	491
BmiI	GGNNCC	1 cut(s)	525
BmrFI	CCNGG	1 cut(s)	54
BmsI	GCATC	1 cut(s)	262
Bpu1102I	GCTNAGC	1 cut(s)	507
BsaBI	GATNNNNATC	1 cut(s)	252
Bsc4I	CCNNNNNNNGG	1 cut(s)	554
Bse3DI	GCAATG	1 cut(s)	395
Bse8I	GATNNNNATC	1 cut(s)	252
BseBI	CCWGG	1 cut(s)	54
BseGI	GGATG	3 cut(s)	103, 253, 382
BseJI	GATNNNNATC	1 cut(s)	252
BseLI	CCNNNNNNNGG	1 cut(s)	554
BseMI	GCAATG	1 cut(s)	395
BseSI	GKGCMC	1 cut(s)	526
BseXI	GCAGC	2 cut(s)	298, 301
BshFI	GGCC	1 cut(s)	451
BshNI	GGYRCC	1 cut(s)	523
BsiHKAI	GWGCWC	1 cut(s)	175
BsiHKCI	CYCGRG	1 cut(s)	110
BslFI	GGGAC	1 cut(s)	555
BslI	CCNNNNNNNGG	1 cut(s)	554
BsmAI	GTCTC	1 cut(s)	65
BsmFI	GGGAC	1 cut(s)	555
BsnI	GGCC	1 cut(s)	451
BsoBI	CYCGRG	1 cut(s)	110
Bsp1286I	GDGCHC	2 cut(s)	175, 526
Bsp143I	GATC	1 cut(s)	166
Bsp1720I	GCTNAGC	1 cut(s)	507
BspANI	GGCC	1 cut(s)	451
BspCNI	CTCAG	1 cut(s)	4
BspHI	TCATGA	1 cut(s)	316
BspLI	GGNNCC	1 cut(s)	525
BspMI	ACCTGC	1 cut(s)	535
BspT107I	GGYRCC	1 cut(s)	523
BsrDI	GCAATG	1 cut(s)	395
BssMI	GATC	1 cut(s)	166
Bst2UI	CCWGG	1 cut(s)	54
Bst4CI	ACNGT	3 cut(s)	7, 417, 569
BstC8I	GCNNGC	1 cut(s)	294
BstDEI	CTNAG	2 cut(s)	12, 507
BstENI	CCTNNNNNAGG	1 cut(s)	552
BstF5I	GGATG	3 cut(s)	103, 253, 382
BstKTI	GATC	1 cut(s)	169
BstMAI	GTCTC	1 cut(s)	65
BstMBI	GATC	1 cut(s)	166
BstMWI	GCNNNNNNNGC	1 cut(s)	179
BstNI	CCWGG	1 cut(s)	54
BstSCI	CCNGG	1 cut(s)	52
BstSLI	GKGCMC	1 cut(s)	526
BstV1I	GCAGC	2 cut(s)	298, 301
BsuRI	GGCC	1 cut(s)	451
BtsCI	GGATG	3 cut(s)	103, 253, 382
BveI	ACCTGC	1 cut(s)	535
Cac8I	GCNNGC	1 cut(s)	294
CaiI	CAGNNNCTG	1 cut(s)	11
CciI	TCATGA	1 cut(s)	316
Cfr13I	GGNCC	1 cut(s)	491
Csp6I	GTAC	2 cut(s)	404, 565
CviAII	CATG	4 cut(s)	233, 272, 281, 317
CviJI	RGCY	8 cut(s)	11, 142, 182, 220, 296, 451, 506, 511
CviKI_1	RGCY	8 cut(s)	11, 142, 182, 220, 296, 451, 506, 511
CviQI	GTAC	2 cut(s)	404, 565
DdeI	CTNAG	2 cut(s)	12, 507
DpnI	GATC	1 cut(s)	168
DpnII	GATC	1 cut(s)	166
EaeI	YGGCCR	1 cut(s)	449
Eco47I	GGWCC	1 cut(s)	491
Eco57I	CTGAAG	1 cut(s)	177
Eco88I	CYCGRG	1 cut(s)	110
EcoNI	CCTNNNNNAGG	1 cut(s)	552
EcoRII	CCWGG	1 cut(s)	52
FaeI	CATG	4 cut(s)	236, 275, 284, 320
FaqI	GGGAC	1 cut(s)	555
FatI	CATG	4 cut(s)	232, 271, 280, 316
Fnu4HI	GCNGC	2 cut(s)	287, 290
FokI	GGATG	3 cut(s)	110, 240, 369
Fsp4HI	GCNGC	2 cut(s)	287, 290
FspBI	CTAG	2 cut(s)	297, 465
GluI	GCNGC	2 cut(s)	287, 290
HaeIII	GGCC	1 cut(s)	451
Hin1II	CATG	4 cut(s)	236, 275, 284, 320
HincII	GTYRAC	2 cut(s)	210, 470
HindII	GTYRAC	2 cut(s)	210, 470
Hpy166II	GTNNAC	4 cut(s)	210, 470, 565, 587
Hpy188I	TCNGA	2 cut(s)	157, 258
Hpy188III	TCNNGA	2 cut(s)	110, 317
Hpy8I	GTNNAC	4 cut(s)	210, 470, 565, 587
HpyAV	CCTTC	3 cut(s)	230, 513, 558
HpyCH4III	ACNGT	3 cut(s)	7, 417, 569
HpyCH4IV	ACGT	2 cut(s)	103, 331
HpyCH4V	TGCA	4 cut(s)	232, 342, 400, 530
HpyF10VI	GCNNNNNNNGC	1 cut(s)	179
HpyF3I	CTNAG	2 cut(s)	12, 507
HpySE526I	ACGT	2 cut(s)	103, 331
Hsp92II	CATG	4 cut(s)	236, 275, 284, 320
Kzo9I	GATC	1 cut(s)	166
LmnI	GCTCC	1 cut(s)	147
LpnPI	CCDG	3 cut(s)	39, 66, 540
Lsp1109I	GCAGC	2 cut(s)	298, 301
LweI	GCATC	1 cut(s)	262
MaeI	CTAG	2 cut(s)	297, 465
MaeII	ACGT	2 cut(s)	103, 331
MalI	GATC	1 cut(s)	168
MboI	GATC	1 cut(s)	166
MfeI	CAATTG	1 cut(s)	536
MhlI	GDGCHC	2 cut(s)	175, 526
MlsI	TGGCCA	1 cut(s)	451
MluCI	AATT	8 cut(s)	26, 35, 57, 89, 265, 377, 445, 536
MluNI	TGGCCA	1 cut(s)	451
MmeI	TCCRAC	1 cut(s)	331
MnlI	CCTC	6 cut(s)	25, 88, 340, 357, 447, 482
Mox20I	TGGCCA	1 cut(s)	451
MscI	TGGCCA	1 cut(s)	451
MseI	TTAA	3 cut(s)	38, 264, 360
Msp20I	TGGCCA	1 cut(s)	451
MspR9I	CCNGG	1 cut(s)	54
MunI	CAATTG	1 cut(s)	536
MvaI	CCWGG	1 cut(s)	54
MwoI	GCNNNNNNNGC	1 cut(s)	179
NdeII	GATC	1 cut(s)	166
NlaIII	CATG	4 cut(s)	236, 275, 284, 320
NlaIV	GGNNCC	1 cut(s)	525
PagI	TCATGA	1 cut(s)	316
PaqCI	CACCTGC	1 cut(s)	535
PfoI	TCCNGGA	1 cut(s)	52
PkrI	GCNGC	2 cut(s)	288, 291
PshBI	ATTAAT	1 cut(s)	38
Psp6I	CCWGG	1 cut(s)	52
PspGI	CCWGG	1 cut(s)	52
PspN4I	GGNNCC	1 cut(s)	525
PspPI	GGNCC	1 cut(s)	491
PstNI	CAGNNNCTG	1 cut(s)	11
RsaI	GTAC	2 cut(s)	405, 566
RsaNI	GTAC	2 cut(s)	404, 565
SaqAI	TTAA	3 cut(s)	38, 264, 360
SatI	GCNGC	2 cut(s)	287, 290
Sau3AI	GATC	1 cut(s)	166
Sau96I	GGNCC	1 cut(s)	491
ScrFI	CCNGG	1 cut(s)	54
SduI	GDGCHC	2 cut(s)	175, 526
SfaNI	GCATC	1 cut(s)	262
SinI	GGWCC	1 cut(s)	491
Sse9I	AATT	8 cut(s)	26, 35, 57, 89, 265, 377, 445, 536
SspMI	CTAG	2 cut(s)	297, 465
StyD4I	CCNGG	1 cut(s)	52
TaaI	ACNGT	3 cut(s)	7, 417, 569
TaiI	ACGT	2 cut(s)	106, 334
TaqI	TCGA	1 cut(s)	169
TasI	AATT	8 cut(s)	26, 35, 57, 89, 265, 377, 445, 536
Tru1I	TTAA	3 cut(s)	38, 264, 360
Tru9I	TTAA	3 cut(s)	38, 264, 360
TseI	GCWGC	2 cut(s)	286, 289
TspDTI	ATGAA	4 cut(s)	239, 249, 288, 371
VpaK11BI	GGWCC	1 cut(s)	491
VspI	ATTAAT	1 cut(s)	38
XagI	CCTNNNNNAGG	1 cut(s)	552
XapI	RAATTY	3 cut(s)	26, 89, 377
XspI	CTAG	2 cut(s)	297, 465

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.