Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8443445.1

Orthogroup ID

OG0006198

Physical Location & Seq

Genomic Coordinates Reverse (-)

1149 .. 1490

Gene Structure 342 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8443445.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 342 bp

atgtacccggcttctaggctctcgctgcttaatttgaattccttccactgccgtaatgtgttcaattatattcgaaattttaaatcctgggttaataatacattcatatggatcttgttgcagattttcctccctcttggtaagactagtcatatgatatacgggattgtgggaatactcatattctgtggctacattgtccatgacacagatgaattgatcaagcactacgagtacgatgagtacattttggcggccatcgacttgtatttggatctcctcaacttgtttctcaggtttctcgagttgatgaaagatgctgagagctcagacgatgcttaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Bax1-I

Protein Analysis

113

Amino Acids

13.36

Weight (kDa)

5.13

Isoelectric Point (pI)

27.66

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006198)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G03070 AT1G03070 AT1G03070 AT3G63310 AT4G02690 AT4G02690
fragaria_vesca	FvH4_2g23060 FvH4_2g24870
malus_domestica	MD03G1259200.v1.1 MD11G1279800.v1.1
prunus_persica	Prupe.8G235700_v2.0.a1
pyrus_communis	pycom03g20700 pycom11g24750
rosa_chinensis	RchiOBHm_Chr6g0290161 RchiOBHm_Chr6g0292711
rosa_laevigata	RLG00000011997 RLG00000012236
rosa_multiflora	Rmu_co8443445.1_g000001 Rmu_sc0002902.1_g000017
rosa_roxburghii	Rroxscaffold_7G00174750 Rroxscaffold_7G00177280
rosa_rugosa	Rorug06G0210500 Rorug06G0229200
rosa_samantha	Rh6BG349700 Rh6DG321200
rosa_wichuraiana	Rw6G027730 Rw6G029870

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	254
AclWI	GGATC	2 cut(s)	119, 282
AcoI	YGGCCR	1 cut(s)	255
AcsI	RAATTY	2 cut(s)	37, 76
AfaI	GTAC	3 cut(s)	5, 236, 245
AgsI	TTSAA	2 cut(s)	37, 64
AhlI	ACTAGT	1 cut(s)	146
AjnI	CCWGG	1 cut(s)	86
AluBI	AGCT	1 cut(s)	327
AluI	AGCT	1 cut(s)	327
Alw21I	GWGCWC	1 cut(s)	329
AlwI	GGATC	2 cut(s)	119, 282
Ama87I	CYCGRG	1 cut(s)	302
AoxI	GGCC	1 cut(s)	255
ApeKI	GCWGC	1 cut(s)	25
ApoI	RAATTY	2 cut(s)	37, 76
Asp700I	GAANNNNTTC	1 cut(s)	41
AsuC2I	CCSGG	1 cut(s)	8
AsuII	TTCGAA	1 cut(s)	73
AvaI	CYCGRG	1 cut(s)	302
BanII	GRGCYC	1 cut(s)	329
Bbv12I	GWGCWC	1 cut(s)	329
BbvI	GCAGC	1 cut(s)	12
BccI	CCATC	1 cut(s)	266
BceAI	ACGGC	1 cut(s)	36
BciT130I	CCWGG	1 cut(s)	88
BclI	TGATCA	1 cut(s)	219
BcnI	CCSGG	1 cut(s)	8
BcuI	ACTAGT	1 cut(s)	146
BfaI	CTAG	2 cut(s)	15, 147
BisI	GCNGC	2 cut(s)	26, 255
BlsI	GCNGC	2 cut(s)	27, 256
Bme1390I	CCNGG	2 cut(s)	8, 88
BmeT110I	CYCGRG	1 cut(s)	302
BmrFI	CCNGG	2 cut(s)	8, 88
BmsI	GCATC	2 cut(s)	307, 325
Bpu14I	TTCGAA	1 cut(s)	73
BpuMI	CCSGG	1 cut(s)	8
BsaJI	CCNNGG	1 cut(s)	87
BseBI	CCWGG	1 cut(s)	88
BseDI	CCNNGG	1 cut(s)	87
BseMII	CTCAG	3 cut(s)	307, 312, 342
BseRI	GAGGAG	1 cut(s)	269
BseXI	GCAGC	1 cut(s)	12
BshFI	GGCC	1 cut(s)	257
BsiHKAI	GWGCWC	1 cut(s)	329
BsiHKCI	CYCGRG	1 cut(s)	302
BsiSI	CCGG	1 cut(s)	8
BsnI	GGCC	1 cut(s)	257
BsoBI	CYCGRG	1 cut(s)	302
Bsp119I	TTCGAA	1 cut(s)	73
Bsp1286I	GDGCHC	1 cut(s)	329
Bsp143I	GATC	3 cut(s)	111, 219, 274
BspACI	CCGC	1 cut(s)	254
BspANI	GGCC	1 cut(s)	257
BspCNI	CTCAG	3 cut(s)	306, 313, 341
BspPI	GGATC	2 cut(s)	119, 282
BspT104I	TTCGAA	1 cut(s)	73
BssECI	CCNNGG	1 cut(s)	87
BssMI	GATC	3 cut(s)	111, 219, 274
Bst2UI	CCWGG	1 cut(s)	88
BstBI	TTCGAA	1 cut(s)	73
BstDEI	CTNAG	3 cut(s)	293, 321, 328
BstKTI	GATC	3 cut(s)	114, 222, 277
BstMBI	GATC	3 cut(s)	111, 219, 274
BstMWI	GCNNNNNNNGC	1 cut(s)	25
BstNI	CCWGG	1 cut(s)	88
BstSCI	CCNGG	2 cut(s)	6, 86
BstV1I	GCAGC	1 cut(s)	12
BstX2I	RGATCY	2 cut(s)	111, 274
BstYI	RGATCY	2 cut(s)	111, 274
BsuRI	GGCC	1 cut(s)	257
BtsI	GCAGTG	1 cut(s)	46
BtsIMutI	CAGTG	1 cut(s)	46
Csp6I	GTAC	3 cut(s)	4, 235, 244
CviAII	CATG	1 cut(s)	203
CviJI	RGCY	5 cut(s)	11, 19, 192, 257, 327
CviKI_1	RGCY	5 cut(s)	11, 19, 192, 257, 327
CviQI	GTAC	3 cut(s)	4, 235, 244
DdeI	CTNAG	3 cut(s)	293, 321, 328
DpnI	GATC	3 cut(s)	113, 221, 276
DpnII	GATC	3 cut(s)	111, 219, 274
DraI	TTTAAA	1 cut(s)	82
EaeI	YGGCCR	1 cut(s)	255
Ecl136II	GAGCTC	1 cut(s)	327
Eco24I	GRGCYC	1 cut(s)	329
Eco53kI	GAGCTC	1 cut(s)	327
Eco88I	CYCGRG	1 cut(s)	302
EcoICRI	GAGCTC	1 cut(s)	327
EcoRI	GAATTC	1 cut(s)	37
EcoRII	CCWGG	1 cut(s)	86
EcoT38I	GRGCYC	1 cut(s)	329
FaeI	CATG	1 cut(s)	206
FaiI	YATR	8 cut(s)	69, 107, 109, 153, 155, 160, 182, 204
FatI	CATG	1 cut(s)	202
FauNDI	CATATG	2 cut(s)	107, 153
FbaI	TGATCA	1 cut(s)	219
Fnu4HI	GCNGC	2 cut(s)	26, 255
FriOI	GRGCYC	1 cut(s)	329
Fsp4HI	GCNGC	2 cut(s)	26, 255
FspBI	CTAG	2 cut(s)	15, 147
GluI	GCNGC	2 cut(s)	26, 255
HaeIII	GGCC	1 cut(s)	257
HapII	CCGG	1 cut(s)	8
Hin1II	CATG	1 cut(s)	206
HpaII	CCGG	1 cut(s)	8
Hpy188I	TCNGA	1 cut(s)	331
Hpy188III	TCNNGA	1 cut(s)	302
HpyAV	CCTTC	1 cut(s)	52
HpyCH4V	TGCA	1 cut(s)	121
HpyF10VI	GCNNNNNNNGC	1 cut(s)	25
HpyF3I	CTNAG	3 cut(s)	293, 321, 328
Hsp92II	CATG	1 cut(s)	206
Ksp22I	TGATCA	1 cut(s)	219
Kzo9I	GATC	3 cut(s)	111, 219, 274
LpnPI	CCDG	4 cut(s)	21, 73, 100, 280
Lsp1109I	GCAGC	1 cut(s)	12
LweI	GCATC	2 cut(s)	307, 325
MaeI	CTAG	2 cut(s)	15, 147
MalI	GATC	3 cut(s)	113, 221, 276
MboI	GATC	3 cut(s)	111, 219, 274
MflI	RGATCY	2 cut(s)	111, 274
MhlI	GDGCHC	1 cut(s)	329
MluCI	AATT	5 cut(s)	31, 37, 64, 76, 215
MnlI	CCTC	3 cut(s)	140, 144, 290
MroXI	GAANNNNTTC	1 cut(s)	41
MseI	TTAA	4 cut(s)	30, 81, 93, 340
MslI	CAYNNNNRTG	1 cut(s)	106
MspI	CCGG	1 cut(s)	8
MspR9I	CCNGG	2 cut(s)	8, 88
MvaI	CCWGG	1 cut(s)	88
MwoI	GCNNNNNNNGC	1 cut(s)	25
NciI	CCSGG	1 cut(s)	8
NdeI	CATATG	2 cut(s)	107, 153
NdeII	GATC	3 cut(s)	111, 219, 274
NlaIII	CATG	1 cut(s)	206
NspV	TTCGAA	1 cut(s)	73
PaeR7I	CTCGAG	1 cut(s)	302
PdmI	GAANNNNTTC	1 cut(s)	41
PkrI	GCNGC	2 cut(s)	27, 256
Psp124BI	GAGCTC	1 cut(s)	329
Psp6I	CCWGG	1 cut(s)	86
PspGI	CCWGG	1 cut(s)	86
PsuI	RGATCY	2 cut(s)	111, 274
RsaI	GTAC	3 cut(s)	5, 236, 245
RsaNI	GTAC	3 cut(s)	4, 235, 244
RseI	CAYNNNNRTG	1 cut(s)	106
SacI	GAGCTC	1 cut(s)	329
SaqAI	TTAA	4 cut(s)	30, 81, 93, 340
SatI	GCNGC	2 cut(s)	26, 255
Sau3AI	GATC	3 cut(s)	111, 219, 274
ScrFI	CCNGG	2 cut(s)	8, 88
SduI	GDGCHC	1 cut(s)	329
SetI	ASST	2 cut(s)	299, 329
SfaNI	GCATC	2 cut(s)	307, 325
Sfr274I	CTCGAG	1 cut(s)	302
SfuI	TTCGAA	1 cut(s)	73
SlaI	CTCGAG	1 cut(s)	302
SmiMI	CAYNNNNRTG	1 cut(s)	106
SmlI	CTYRAG	1 cut(s)	302
SmoI	CTYRAG	1 cut(s)	302
SpeI	ACTAGT	1 cut(s)	146
Sse9I	AATT	5 cut(s)	31, 37, 64, 76, 215
SsiI	CCGC	1 cut(s)	254
SspMI	CTAG	2 cut(s)	15, 147
SstI	GAGCTC	1 cut(s)	329
StyD4I	CCNGG	2 cut(s)	6, 86
TaqI	TCGA	3 cut(s)	73, 261, 303
TasI	AATT	5 cut(s)	31, 37, 64, 76, 215
TatI	WGTACW	1 cut(s)	243
TauI	GCSGC	1 cut(s)	257
Tru1I	TTAA	4 cut(s)	30, 81, 93, 340
Tru9I	TTAA	4 cut(s)	30, 81, 93, 340
TscAI	CASTG	1 cut(s)	53
TseI	GCWGC	1 cut(s)	25
TspDTI	ATGAA	3 cut(s)	94, 228, 326
TspRI	CASTG	1 cut(s)	53
XapI	RAATTY	2 cut(s)	37, 76
XhoI	CTCGAG	1 cut(s)	302
XmnI	GAANNNNTTC	1 cut(s)	41
XspI	CTAG	2 cut(s)	15, 147

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.