MD11G1279800.v1.1

Belongs to the BI1 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr11
OG0006198
Physical Location & Seq
Forward (+)
39735951 .. 39737890
1940 bp
Loading structure...
UTR
Exon/CDS
Intron
MD11G1279800.v1.1.491

Sequence Viewer

Length: 726 bp
ATGTGGAATCAGGCGTTTCGGAAGAGTGATCCGGAGGCCGGAGCGAGGCTGCTCTACCCTGTGATGCTCGAGAGCCCCGAGCTCCGGTGGTCCTTCATCCGCAAAATCTACGCGATCGTTGCCATCCAATTACTCGCCACCATCGCTGTAGGCGCCGTCGTCGTTTCGGTCCGGCCGGTGGCTAACTTCTTTGTCAGCACCGGCGCCGGCCTGGCGCTCTACATCGTTCTCATCATCACGCCTTTCATCGTGCTGTGCCCACTGTACTATTACCACCAGAAGCATCCGGTTAATTATCTTTTACTGGGAATTTTTACCATCTCACTGGCATTTGTCGTTGGTTTGACCTGTGCATTTACTAGCGGGAAGGTGATTTTGGAGTCGGTTATTCTGACGGCAGTGGTCGTAATTGGTTTGACCTTGTACACATTTTGGGCTGCAAGGAGAGGCCAAGATTTCCACTTTCTTGGTCCTTTCTTGTCCGGAGCTCTACTGGTTCTGATCGTATTTGCTCTGATTCAGGTTTTCTTCCCGCTTGGTAAGATCTCGGTGATGATATATGGTTGCTTGGCGTCGATTATATTTTGTGGGTACATTGTGTATGACACGGACAACTTGATCAAGCGATACTCTTACGACGAGTACATTTGGGCTGCAGTTTCCTTGTATTTGGATATCATCAACCTCTTCCTAGCTCTTCTCACCGTTTTTAGGGCGTCCGACTGA

Protein Analysis

242

Amino Acids

26.92

Weight (kDa)

8.62

Isoelectric Point (pI)

24.63

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Bax1-I PF01027 31 - 237 1.1e-48 Inhibitor of apoptosis-promoting Bax1
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 152, 203
AccII CGCG 1 cut(s) 113
AccIII TCCGGA 2 cut(s) 31, 482
AciI CCGC 3 cut(s) 100, 363, 533
AclWI GGATC 1 cut(s) 23
AcoI YGGCCR 1 cut(s) 173
AcsI RAATTY 1 cut(s) 309
AcyI GRCGYC 4 cut(s) 153, 204, 572, 716
AfaI GTAC 4 cut(s) 266, 425, 593, 644
AfiI CCNNNNNNNGG 5 cut(s) 38, 45, 84, 178, 711
AjnI CCWGG 1 cut(s) 210
AjuI GAANNNNNNNTTGG 2 cut(s) 359, 391
AluBI AGCT 3 cut(s) 82, 488, 695
AluI AGCT 3 cut(s) 82, 488, 695
Alw21I GWGCWC 2 cut(s) 84, 490
AlwI GGATC 1 cut(s) 23
Ama87I CYCGRG 2 cut(s) 68, 77
Aor13HI TCCGGA 2 cut(s) 31, 482
AoxI GGCC 4 cut(s) 36, 173, 208, 448
ApeKI GCWGC 3 cut(s) 49, 437, 653
ApoI RAATTY 1 cut(s) 309
AspLEI GCGC 3 cut(s) 155, 206, 217
AspS9I GGNCC 3 cut(s) 90, 169, 470
AsuHPI GGTGA 3 cut(s) 382, 562, 694
AvaI CYCGRG 2 cut(s) 68, 77
AvaII GGWCC 3 cut(s) 90, 169, 470
BaeGI GKGCMC 1 cut(s) 260
BanI GGYRCC 2 cut(s) 152, 203
BanII GRGCYC 3 cut(s) 77, 84, 490
Bbv12I GWGCWC 2 cut(s) 84, 490
BbvI GCAGC 3 cut(s) 36, 424, 640
BccI CCATC 3 cut(s) 131, 149, 326
BceAI ACGGC 2 cut(s) 140, 411
BciT130I CCWGG 1 cut(s) 212
BclI TGATCA 1 cut(s) 618
BfaI CTAG 2 cut(s) 360, 692
BfmI CTRYAG 2 cut(s) 147, 654
BfoI RGCGCY 3 cut(s) 156, 207, 218
BglI GCCNNNNNGGC 1 cut(s) 212
BglII AGATCT 1 cut(s) 543
BisI GCNGC 3 cut(s) 50, 438, 654
BlsI GCNGC 3 cut(s) 51, 439, 655
Bme1390I CCNGG 1 cut(s) 212
Bme18I GGWCC 3 cut(s) 90, 169, 470
BmeT110I CYCGRG 2 cut(s) 68, 77
BmgT120I GGNCC 3 cut(s) 90, 169, 470
BmiI GGNNCC 2 cut(s) 154, 205
BmrFI CCNGG 1 cut(s) 212
BmrI ACTGGG 1 cut(s) 314
BmsI GCATC 2 cut(s) 54, 292
BmuI ACTGGG 1 cut(s) 314
BsaHI GRCGYC 4 cut(s) 153, 204, 572, 716
BsaWI WCCGGW 4 cut(s) 31, 84, 286, 482
Bsc4I CCNNNNNNNGG 5 cut(s) 38, 45, 84, 178, 711
Bse118I RCCGGY 3 cut(s) 175, 200, 206
Bse1I ACTGG 3 cut(s) 309, 330, 498
BseAI TCCGGA 2 cut(s) 31, 482
BseBI CCWGG 1 cut(s) 212
BseGI GGATG 3 cut(s) 96, 123, 283
BseLI CCNNNNNNNGG 5 cut(s) 38, 45, 84, 178, 711
BseNI ACTGG 3 cut(s) 309, 330, 498
BseSI GKGCMC 1 cut(s) 260
BseX3I CGGCCG 1 cut(s) 173
BseXI GCAGC 3 cut(s) 36, 424, 640
Bsh1236I CGCG 1 cut(s) 113
Bsh1285I CGRYCG 2 cut(s) 117, 176
BshFI GGCC 4 cut(s) 38, 175, 210, 450
BshNI GGYRCC 2 cut(s) 152, 203
BsiEI CGRYCG 2 cut(s) 117, 176
BsiHKAI GWGCWC 2 cut(s) 84, 490
BsiHKCI CYCGRG 2 cut(s) 68, 77
BsiSI CCGG 9 cut(s) 32, 39, 85, 172, 176, 201, 207, 287, 483
BslI CCNNNNNNNGG 5 cut(s) 38, 45, 84, 178, 711
BsnI GGCC 4 cut(s) 38, 175, 210, 450
BsoBI CYCGRG 2 cut(s) 68, 77
Bsp1286I GDGCHC 4 cut(s) 77, 84, 260, 490
Bsp13I TCCGGA 2 cut(s) 31, 482
Bsp1407I TGTACA 1 cut(s) 423
Bsp143I GATC 5 cut(s) 28, 114, 501, 543, 618
BspACI CCGC 3 cut(s) 100, 363, 533
BspANI GGCC 4 cut(s) 38, 175, 210, 450
BspEI TCCGGA 2 cut(s) 31, 482
BspFNI CGCG 1 cut(s) 113
BspLI GGNNCC 2 cut(s) 154, 205
BspMAI CTGCAG 1 cut(s) 658
BspPI GGATC 1 cut(s) 23
BspQI GCTCTTC 1 cut(s) 702
BspT107I GGYRCC 2 cut(s) 152, 203
BsrFI RCCGGY 3 cut(s) 175, 200, 206
BsrGI TGTACA 1 cut(s) 423
BsrI ACTGG 3 cut(s) 309, 330, 498
BssAI RCCGGY 3 cut(s) 175, 200, 206
BssMI GATC 5 cut(s) 28, 114, 501, 543, 618
BssNI GRCGYC 4 cut(s) 153, 204, 572, 716
Bst2UI CCWGG 1 cut(s) 212
Bst4CI ACNGT 2 cut(s) 264, 706
Bst6I CTCTTC 3 cut(s) 17, 692, 702
BstACI GRCGYC 4 cut(s) 153, 204, 572, 716
BstAUI TGTACA 1 cut(s) 423
BstC8I GCNNGC 1 cut(s) 208
BstF5I GGATG 3 cut(s) 96, 123, 283
BstFNI CGCG 1 cut(s) 113
BstH2I RGCGCY 3 cut(s) 156, 207, 218
BstHHI GCGC 3 cut(s) 155, 206, 217
BstKTI GATC 5 cut(s) 31, 117, 504, 546, 621
BstMBI GATC 5 cut(s) 28, 114, 501, 543, 618
BstMCI CGRYCG 2 cut(s) 117, 176
BstMWI GCNNNNNNNGC 4 cut(s) 119, 143, 152, 212
BstNI CCWGG 1 cut(s) 212
BstSCI CCNGG 1 cut(s) 210
BstSFI CTRYAG 2 cut(s) 147, 654
BstSLI GKGCMC 1 cut(s) 260
BstUI CGCG 1 cut(s) 113
BstV1I GCAGC 3 cut(s) 36, 424, 640
BstX2I RGATCY 1 cut(s) 543
BstXI CCANNNNNNTGG 2 cut(s) 325, 467
BstYI RGATCY 1 cut(s) 543
BstZI CGGCCG 1 cut(s) 173
BsuRI GGCC 4 cut(s) 38, 175, 210, 450
BtgZI GCGATG 1 cut(s) 127
BtsCI GGATG 3 cut(s) 96, 123, 283
BtsI GCAGTG 1 cut(s) 405
BtsIMutI CAGTG 3 cut(s) 260, 323, 405
Cac8I GCNNGC 1 cut(s) 208
CfoI GCGC 3 cut(s) 155, 206, 217
Cfr10I RCCGGY 3 cut(s) 175, 200, 206
Cfr13I GGNCC 3 cut(s) 90, 169, 470
CpoI CGGWCCG 1 cut(s) 169
CseI GACGC 2 cut(s) 561, 705
Csp6I GTAC 4 cut(s) 265, 424, 592, 643
CspI CGGWCCG 1 cut(s) 169
CviQI GTAC 4 cut(s) 265, 424, 592, 643
DinI GGCGCC 2 cut(s) 154, 205
DpnI GATC 5 cut(s) 30, 116, 503, 545, 620
DpnII GATC 5 cut(s) 28, 114, 501, 543, 618
EaeI YGGCCR 1 cut(s) 173
EagI CGGCCG 1 cut(s) 173
Eam1104I CTCTTC 3 cut(s) 17, 692, 702
EarI CTCTTC 3 cut(s) 17, 692, 702
Ecl136II GAGCTC 2 cut(s) 82, 488
EclXI CGGCCG 1 cut(s) 173
Eco24I GRGCYC 3 cut(s) 77, 84, 490
Eco32I GATATC 1 cut(s) 676
Eco47I GGWCC 3 cut(s) 90, 169, 470
Eco52I CGGCCG 1 cut(s) 173
Eco53kI GAGCTC 2 cut(s) 82, 488
Eco88I CYCGRG 2 cut(s) 68, 77
EcoICRI GAGCTC 2 cut(s) 82, 488
EcoRII CCWGG 1 cut(s) 210
EcoRV GATATC 1 cut(s) 676
EcoT38I GRGCYC 3 cut(s) 77, 84, 490
EgeI GGCGCC 2 cut(s) 154, 205
EheI GGCGCC 2 cut(s) 154, 205
FaiI YATR 4 cut(s) 559, 561, 581, 603
FauI CCCGC 2 cut(s) 356, 540
FbaI TGATCA 1 cut(s) 618
Fnu4HI GCNGC 3 cut(s) 50, 438, 654
FokI GGATG 3 cut(s) 83, 110, 270
FriOI GRGCYC 3 cut(s) 77, 84, 490
Fsp4HI GCNGC 3 cut(s) 50, 438, 654
FspBI CTAG 2 cut(s) 360, 692
GlaI GCGC 3 cut(s) 154, 205, 216
GluI GCNGC 3 cut(s) 50, 438, 654
HaeII RGCGCY 3 cut(s) 156, 207, 218
HaeIII GGCC 4 cut(s) 38, 175, 210, 450
HapII CCGG 9 cut(s) 32, 39, 85, 172, 176, 201, 207, 287, 483
HgaI GACGC 2 cut(s) 561, 705
HhaI GCGC 3 cut(s) 155, 206, 217
Hin1I GRCGYC 4 cut(s) 153, 204, 572, 716
Hin6I GCGC 3 cut(s) 153, 204, 215
HinP1I GCGC 3 cut(s) 153, 204, 215
HinfI GANTC 3 cut(s) 7, 380, 517
HpaII CCGG 9 cut(s) 32, 39, 85, 172, 176, 201, 207, 287, 483
HphI GGTGA 3 cut(s) 382, 562, 694
Hpy166II GTNNAC 1 cut(s) 426
Hpy188I TCNGA 5 cut(s) 21, 393, 501, 516, 721
Hpy188III TCNNGA 3 cut(s) 32, 70, 483
Hpy8I GTNNAC 1 cut(s) 426
Hpy99I CGWCG 4 cut(s) 161, 164, 577, 641
HpyAV CCTTC 2 cut(s) 103, 361
HpyCH4III ACNGT 2 cut(s) 264, 706
HpyCH4V TGCA 3 cut(s) 353, 440, 656
HpyF10VI GCNNNNNNNGC 4 cut(s) 119, 143, 152, 212
Hsp92I GRCGYC 4 cut(s) 153, 204, 572, 716
HspAI GCGC 3 cut(s) 153, 204, 215
KasI GGCGCC 2 cut(s) 152, 203
Kpn2I TCCGGA 2 cut(s) 31, 482
KroI GCCGGC 1 cut(s) 206
KroNI GCCGGC 1 cut(s) 208
Ksp22I TGATCA 1 cut(s) 618
Kzo9I GATC 5 cut(s) 28, 114, 501, 543, 618
LguI GCTCTTC 1 cut(s) 702
LmnI GCTCC 3 cut(s) 41, 87, 485
Lsp1109I GCAGC 3 cut(s) 36, 424, 640
LweI GCATC 2 cut(s) 54, 292
MaeI CTAG 2 cut(s) 360, 692
MalI GATC 5 cut(s) 30, 116, 503, 545, 620
MboI GATC 5 cut(s) 28, 114, 501, 543, 618
MboII GAAGA 4 cut(s) 34, 520, 679, 689
MflI RGATCY 1 cut(s) 543
MhlI GDGCHC 4 cut(s) 77, 84, 260, 490
MluCI AATT 4 cut(s) 128, 292, 309, 408
Mly113I GGCGCC 2 cut(s) 153, 204
MlyI GAGTC 1 cut(s) 389
MnlI CCTC 4 cut(s) 28, 39, 440, 695
MroI TCCGGA 2 cut(s) 31, 482
MroNI GCCGGC 1 cut(s) 206
MseI TTAA 1 cut(s) 291
MspI CCGG 9 cut(s) 32, 39, 85, 172, 176, 201, 207, 287, 483
MspR9I CCNGG 1 cut(s) 212
MvaI CCWGG 1 cut(s) 212
MvnI CGCG 1 cut(s) 113
MwoI GCNNNNNNNGC 4 cut(s) 119, 143, 152, 212
NaeI GCCGGC 1 cut(s) 208
NarI GGCGCC 2 cut(s) 153, 204
NdeII GATC 5 cut(s) 28, 114, 501, 543, 618
NgoMIV GCCGGC 1 cut(s) 206
NlaIV GGNNCC 2 cut(s) 154, 205
PaeR7I CTCGAG 1 cut(s) 68
PciSI GCTCTTC 1 cut(s) 702
PcsI WCGNNNNNNNCGW 1 cut(s) 75
PdiI GCCGGC 1 cut(s) 208
PfeI GAWTC 2 cut(s) 7, 517
PkrI GCNGC 3 cut(s) 51, 439, 655
Ple19I CGATCG 1 cut(s) 117
PleI GAGTC 1 cut(s) 388
PluTI GGCGCC 2 cut(s) 156, 207
PpsI GAGTC 1 cut(s) 388
Psp124BI GAGCTC 2 cut(s) 84, 490
Psp6I CCWGG 1 cut(s) 210
PspGI CCWGG 1 cut(s) 210
PspN4I GGNNCC 2 cut(s) 154, 205
PspPI GGNCC 3 cut(s) 90, 169, 470
PstI CTGCAG 1 cut(s) 658
PsuI RGATCY 1 cut(s) 543
PvuI CGATCG 1 cut(s) 117
RsaI GTAC 4 cut(s) 266, 425, 593, 644
RsaNI GTAC 4 cut(s) 265, 424, 592, 643
Rsr2I CGGWCCG 1 cut(s) 169
RsrII CGGWCCG 1 cut(s) 169
SacI GAGCTC 2 cut(s) 84, 490
SapI GCTCTTC 1 cut(s) 702
SaqAI TTAA 1 cut(s) 291
SatI GCNGC 3 cut(s) 50, 438, 654
Sau3AI GATC 5 cut(s) 28, 114, 501, 543, 618
Sau96I GGNCC 3 cut(s) 90, 169, 470
SchI GAGTC 1 cut(s) 389
ScrFI CCNGG 1 cut(s) 212
SduI GDGCHC 4 cut(s) 77, 84, 260, 490
SetI ASST 8 cut(s) 84, 350, 372, 422, 490, 525, 687, 697
SfaNI GCATC 2 cut(s) 54, 292
SfcI CTRYAG 2 cut(s) 147, 654
SfoI GGCGCC 2 cut(s) 154, 205
Sfr274I CTCGAG 1 cut(s) 68
SgrAI CRCCGGYG 1 cut(s) 200
SinI GGWCC 3 cut(s) 90, 169, 470
SlaI CTCGAG 1 cut(s) 68
SmlI CTYRAG 1 cut(s) 68
SmoI CTYRAG 1 cut(s) 68
Sse9I AATT 4 cut(s) 128, 292, 309, 408
SsiI CCGC 3 cut(s) 100, 363, 533
SspDI GGCGCC 2 cut(s) 152, 203
SspMI CTAG 2 cut(s) 360, 692
SstI GAGCTC 2 cut(s) 84, 490
StyD4I CCNGG 1 cut(s) 210
TaaI ACNGT 2 cut(s) 264, 706
TaqI TCGA 2 cut(s) 69, 575
TaqII GACCGA 1 cut(s) 157
TasI AATT 4 cut(s) 128, 292, 309, 408
TatI WGTACW 3 cut(s) 264, 423, 642
TfiI GAWTC 2 cut(s) 7, 517
Tru1I TTAA 1 cut(s) 291
Tru9I TTAA 1 cut(s) 291
TscAI CASTG 3 cut(s) 267, 330, 405
TseI GCWGC 3 cut(s) 49, 437, 653
TspDTI ATGAA 2 cut(s) 85, 235
TspGWI ACGGA 1 cut(s) 623
TspRI CASTG 3 cut(s) 267, 330, 405
VpaK11BI GGWCC 3 cut(s) 90, 169, 470
XapI RAATTY 1 cut(s) 309
XhoI CTCGAG 1 cut(s) 68
XspI CTAG 2 cut(s) 360, 692
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.