RLG00000011997

Belongs to the BI1 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr3
OG0006198
Physical Location & Seq
Reverse (-)
14423742 .. 14426064
2323 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000011997

Sequence Viewer

Length: 564 bp
ATGACGGAGAGGCCGGAGCTCCTATGGGCCTTCATCCGCAAAGTCTATGCCATCCTCACCTTTCAGATACTCCTCACCATTCCCGTCGCCGCCACCGTCTACTTTAATCCTGCAATCGCCGTATTCCTTATCGAAACTTGGCTCGGATGGTTTCTGAAACAAACGATCATCATCACCTCCCTTGCTGGGAAGGTGGTTTTGGAGGCTGCGATTCTAACTGCTATGATTTTTCTAAGTCTGACCTTGTACACCTTTTGCGCCGCAAGGAGAGGCCATGACTTCAACTTCTTGGGTCCTTTCTTGTTTGCATCCCTGCTGGCTCTGCTTGTCTTTGGAGTGATACAGATTTTCCTCCCTCTTGGTAAGACTAGTCATATGATATACGGGATTGTGGGAATACTCATATTCTGCGGCTACATTGTCCATGACACAGATGAATTGATCAAGCGCTACGAGTACGATGAGTACATTTTGGCGGCCATCGACTTGTATTTGGACCTCCTCAACTTGTTTCTCAGGTTTCTCGAGTTGATGAAAGATGCTGAGAGCTCAGACGATCCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Bax1-I

Protein Analysis

188

Amino Acids

21.32

Weight (kDa)

4.94

Isoelectric Point (pI)

27.65

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Bax1-I PF01027 57 - 178 3.2e-35 Inhibitor of apoptosis-promoting Bax1
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 99
AciI CCGC 5 cut(s) 37, 90, 261, 411, 476
AclWI GGATC 1 cut(s) 551
AcoI YGGCCR 1 cut(s) 477
AfaI GTAC 3 cut(s) 248, 458, 467
AfeI AGCGCT 1 cut(s) 449
AfiI CCNNNNNNNGG 1 cut(s) 186
AgsI TTSAA 1 cut(s) 283
AhlI ACTAGT 1 cut(s) 368
AjuI GAANNNNNNNTTGG 2 cut(s) 182, 214
AluBI AGCT 2 cut(s) 19, 549
AluI AGCT 2 cut(s) 19, 549
Alw21I GWGCWC 2 cut(s) 21, 551
AlwI GGATC 1 cut(s) 551
Ama87I CYCGRG 1 cut(s) 524
Aor51HI AGCGCT 1 cut(s) 449
AoxI GGCC 4 cut(s) 11, 27, 271, 477
ApeKI GCWGC 1 cut(s) 206
AspLEI GCGC 2 cut(s) 260, 450
AspS9I GGNCC 3 cut(s) 27, 293, 496
AsuHPI GGTGA 3 cut(s) 49, 67, 166
AvaI CYCGRG 1 cut(s) 524
AvaII GGWCC 2 cut(s) 293, 496
BanII GRGCYC 2 cut(s) 21, 551
Bbv12I GWGCWC 2 cut(s) 21, 551
BbvI GCAGC 1 cut(s) 193
BccI CCATC 3 cut(s) 59, 141, 488
BceAI ACGGC 1 cut(s) 104
BclI TGATCA 1 cut(s) 441
BcuI ACTAGT 1 cut(s) 368
BfaI CTAG 1 cut(s) 369
BfoI RGCGCY 1 cut(s) 451
BisI GCNGC 5 cut(s) 90, 207, 261, 412, 477
BlsI GCNGC 5 cut(s) 91, 208, 262, 413, 478
Bme18I GGWCC 2 cut(s) 293, 496
BmeT110I CYCGRG 1 cut(s) 524
BmgT120I GGNCC 3 cut(s) 27, 293, 496
BmiI GGNNCC 1 cut(s) 294
BmsI GCATC 2 cut(s) 317, 529
BsaBI GATNNNNATC 1 cut(s) 170
Bsc4I CCNNNNNNNGG 1 cut(s) 186
Bse8I GATNNNNATC 1 cut(s) 170
BseGI GGATG 4 cut(s) 33, 51, 152, 308
BseJI GATNNNNATC 1 cut(s) 170
BseLI CCNNNNNNNGG 1 cut(s) 186
BseMII CTCAG 3 cut(s) 529, 534, 564
BseRI GAGGAG 2 cut(s) 62, 491
BseXI GCAGC 1 cut(s) 193
BseYI CCCAGC 1 cut(s) 185
BshFI GGCC 4 cut(s) 13, 29, 273, 479
BsiHKAI GWGCWC 2 cut(s) 21, 551
BsiHKCI CYCGRG 1 cut(s) 524
BsiSI CCGG 1 cut(s) 14
BslI CCNNNNNNNGG 1 cut(s) 186
BsnI GGCC 4 cut(s) 13, 29, 273, 479
BsoBI CYCGRG 1 cut(s) 524
Bsp1286I GDGCHC 2 cut(s) 21, 551
Bsp1407I TGTACA 1 cut(s) 246
Bsp143I GATC 3 cut(s) 165, 441, 556
BspACI CCGC 5 cut(s) 37, 90, 261, 411, 476
BspANI GGCC 4 cut(s) 13, 29, 273, 479
BspCNI CTCAG 3 cut(s) 528, 535, 563
BspLI GGNNCC 1 cut(s) 294
BspPI GGATC 1 cut(s) 551
BsrGI TGTACA 1 cut(s) 246
BssMI GATC 3 cut(s) 165, 441, 556
Bst4CI ACNGT 1 cut(s) 97
BstAUI TGTACA 1 cut(s) 246
BstC8I GCNNGC 1 cut(s) 318
BstDEI CTNAG 4 cut(s) 233, 515, 543, 550
BstF5I GGATG 4 cut(s) 33, 51, 152, 308
BstH2I RGCGCY 1 cut(s) 451
BstHHI GCGC 2 cut(s) 260, 450
BstKTI GATC 3 cut(s) 168, 444, 559
BstMBI GATC 3 cut(s) 165, 441, 556
BstMWI GCNNNNNNNGC 1 cut(s) 322
BstV1I GCAGC 1 cut(s) 193
BsuRI GGCC 4 cut(s) 13, 29, 273, 479
BtsCI GGATG 4 cut(s) 33, 51, 152, 308
Cac8I GCNNGC 1 cut(s) 318
CfoI GCGC 2 cut(s) 260, 450
Cfr13I GGNCC 3 cut(s) 27, 293, 496
Csp6I GTAC 3 cut(s) 247, 457, 466
CviAII CATG 2 cut(s) 275, 425
CviQI GTAC 3 cut(s) 247, 457, 466
DdeI CTNAG 4 cut(s) 233, 515, 543, 550
DpnI GATC 3 cut(s) 167, 443, 558
DpnII GATC 3 cut(s) 165, 441, 556
EaeI YGGCCR 1 cut(s) 477
Ecl136II GAGCTC 2 cut(s) 19, 549
Eco24I GRGCYC 2 cut(s) 21, 551
Eco47I GGWCC 2 cut(s) 293, 496
Eco47III AGCGCT 1 cut(s) 449
Eco53kI GAGCTC 2 cut(s) 19, 549
Eco88I CYCGRG 1 cut(s) 524
EcoICRI GAGCTC 2 cut(s) 19, 549
EcoO109I RGGNCCY 1 cut(s) 293
EcoT38I GRGCYC 2 cut(s) 21, 551
FaeI CATG 2 cut(s) 278, 428
FaiI YATR 9 cut(s) 25, 48, 224, 276, 375, 377, 382, 404, 426
FatI CATG 2 cut(s) 274, 424
FauNDI CATATG 1 cut(s) 375
FbaI TGATCA 1 cut(s) 441
FblI GTMKAC 1 cut(s) 99
Fnu4HI GCNGC 5 cut(s) 90, 207, 261, 412, 477
FokI GGATG 4 cut(s) 20, 38, 159, 295
FriOI GRGCYC 2 cut(s) 21, 551
Fsp4HI GCNGC 5 cut(s) 90, 207, 261, 412, 477
FspBI CTAG 1 cut(s) 369
GlaI GCGC 2 cut(s) 259, 449
GluI GCNGC 5 cut(s) 90, 207, 261, 412, 477
GsaI CCCAGC 1 cut(s) 189
HaeII RGCGCY 1 cut(s) 451
HaeIII GGCC 4 cut(s) 13, 29, 273, 479
HapII CCGG 1 cut(s) 14
HhaI GCGC 2 cut(s) 260, 450
Hin1II CATG 2 cut(s) 278, 428
Hin6I GCGC 2 cut(s) 258, 448
HinP1I GCGC 2 cut(s) 258, 448
HinfI GANTC 1 cut(s) 211
HpaII CCGG 1 cut(s) 14
HphI GGTGA 3 cut(s) 49, 67, 166
Hpy166II GTNNAC 2 cut(s) 100, 249
Hpy188I TCNGA 5 cut(s) 66, 146, 156, 240, 553
Hpy188III TCNNGA 1 cut(s) 524
Hpy8I GTNNAC 2 cut(s) 100, 249
Hpy99I CGWCG 1 cut(s) 89
HpyAV CCTTC 2 cut(s) 40, 184
HpyCH4III ACNGT 1 cut(s) 97
HpyCH4V TGCA 2 cut(s) 113, 308
HpyF10VI GCNNNNNNNGC 1 cut(s) 322
HpyF3I CTNAG 4 cut(s) 233, 515, 543, 550
Hsp92II CATG 2 cut(s) 278, 428
HspAI GCGC 2 cut(s) 258, 448
Ksp22I TGATCA 1 cut(s) 441
Kzo9I GATC 3 cut(s) 165, 441, 556
LmnI GCTCC 2 cut(s) 16, 24
LpnPI CCDG 6 cut(s) 27, 123, 171, 302, 326, 502
Lsp1109I GCAGC 1 cut(s) 193
LweI GCATC 2 cut(s) 317, 529
MaeI CTAG 1 cut(s) 369
MalI GATC 3 cut(s) 167, 443, 558
MboI GATC 3 cut(s) 165, 441, 556
MhlI GDGCHC 2 cut(s) 21, 551
MluCI AATT 1 cut(s) 437
MseI TTAA 2 cut(s) 105, 562
MspI CCGG 1 cut(s) 14
MwoI GCNNNNNNNGC 1 cut(s) 322
NdeI CATATG 1 cut(s) 375
NdeII GATC 3 cut(s) 165, 441, 556
NlaIII CATG 2 cut(s) 278, 428
NlaIV GGNNCC 1 cut(s) 294
PaeR7I CTCGAG 1 cut(s) 524
PcsI WCGNNNNNNNCGW 1 cut(s) 93
PfeI GAWTC 1 cut(s) 211
PkrI GCNGC 5 cut(s) 91, 208, 262, 413, 478
PpuMI RGGWCCY 1 cut(s) 293
Psp124BI GAGCTC 2 cut(s) 21, 551
Psp5II RGGWCCY 1 cut(s) 293
PspFI CCCAGC 1 cut(s) 185
PspN4I GGNNCC 1 cut(s) 294
PspPI GGNCC 3 cut(s) 27, 293, 496
PspPPI RGGWCCY 1 cut(s) 293
RsaI GTAC 3 cut(s) 248, 458, 467
RsaNI GTAC 3 cut(s) 247, 457, 466
SacI GAGCTC 2 cut(s) 21, 551
SaqAI TTAA 2 cut(s) 105, 562
SatI GCNGC 5 cut(s) 90, 207, 261, 412, 477
Sau3AI GATC 3 cut(s) 165, 441, 556
Sau96I GGNCC 3 cut(s) 27, 293, 496
SduI GDGCHC 2 cut(s) 21, 551
SetI ASST 9 cut(s) 21, 62, 179, 195, 245, 254, 501, 521, 551
SfaNI GCATC 2 cut(s) 317, 529
Sfr274I CTCGAG 1 cut(s) 524
SinI GGWCC 2 cut(s) 293, 496
SlaI CTCGAG 1 cut(s) 524
SmlI CTYRAG 1 cut(s) 524
SmoI CTYRAG 1 cut(s) 524
SpeI ACTAGT 1 cut(s) 368
Sse9I AATT 1 cut(s) 437
SsiI CCGC 5 cut(s) 37, 90, 261, 411, 476
SspMI CTAG 1 cut(s) 369
SstI GAGCTC 2 cut(s) 21, 551
TaaI ACNGT 1 cut(s) 97
TaqI TCGA 3 cut(s) 132, 483, 525
TasI AATT 1 cut(s) 437
TatI WGTACW 2 cut(s) 246, 465
TauI GCSGC 4 cut(s) 92, 263, 414, 479
TfiI GAWTC 1 cut(s) 211
Tru1I TTAA 2 cut(s) 105, 562
Tru9I TTAA 2 cut(s) 105, 562
TseI GCWGC 1 cut(s) 206
TspDTI ATGAA 3 cut(s) 22, 450, 548
TspGWI ACGGA 1 cut(s) 20
VpaK11BI GGWCC 2 cut(s) 293, 496
XhoI CTCGAG 1 cut(s) 524
XmiI GTMKAC 1 cut(s) 99
XspI CTAG 1 cut(s) 369
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.