pycom03g20700

Belongs to the BI1 family

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr3
Physical Location & Seq
Forward (+)
21144503 .. 21146782
2280 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom03g20700.3

Sequence Viewer

Length: 1101 bp
ATGGATCGTCCCAATCTTCCCTCAGAATTTCTCCGCATAGATTCTCCCATTCATCCCAAAACGATGAAATTTCCCACCGAAACCTCCACACTCCACAGCACCCGTCACCCAATACCGACATTCCTTTACCACAAAGGCCCACCCGAGACACATCCAGAACCTCCGGAGCGCCACGTGTCAATACCAAATGCAACCGCCAATCCCACATACGTGTACACGCGACCCGTCGCGAAGTCTCTTAACTGCACGCGAAGGTGCAGTTCTGTTCTACTTATAAACCCCCACAACGTCCCTCACTTTCCCGCAAAGAATCCCGGCAACCAAACACTCGATAACGATCTTAATCTGAGCAAACCAGAGAAGATGAATATGATGTGGAATCAGGCGTATCGGAAGAGTGATCCGGAGGCCGGAGCGAGGCCGCTCTACCCTACGATGCTCGAGAGCCCCGAGCTCCGGTGGTCCTTCATCCGCAAAATCTACGCGATCGCTGCCATGCAATTACTCGCCACCATCGCTGTCGCCGCCGTCGTCGTTTCTGTCCGGCCGGTGGCTAACTTCTTTGTCAGCACCGGCGCCGGCCTTGCTCTCTACATTGTTCTCATCATCACGCCTTTCATCGTGCTGTGCCCGTTGTATTATTACCACCAGAAGCATCCGGTGAATTACCTTTTACTTGGAATTTTCACCCTTTCACTTTCATGTGTGGTCGGTTTGACTTGTGCATTTACTAGTGGGAAGGTGATTTTGGAGTCGGTTATTCTAACGGCAGTGGTCGTAATCGGTTTGACCTTGTACACATTCTGGGCTGCAAGGAGAGGCCACGACTTCAACTTTCTTGGTCCCTTCTTGGCTGGAGCTATTTTGGTTCTCTTCGTATTTGCTCTGATTCAGATTTTGTTCCCGTTGGGTAGGATCTCCGTGATGATATACGGTTGCTTGGCGTCGATCATATTTTGCGGGTACATTGTGTACGACACGGACAACTTGATCAAGCGATACTCTTACGACGAGTACATTTGGGCAGCAGTCGCTTTGTATTTGGATATCATCAACCTCTTCCTCGCGCTTCTCACCGTTTTCAGGGTTTCTGATAGATGA

Protein Analysis

367

Amino Acids

41.12

Weight (kDa)

9.07

Isoelectric Point (pI)

37.6

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 275
AccB1I GGYRCC 1 cut(s) 575
AccBSI CCGCTC 1 cut(s) 424
AccII CGCG 5 cut(s) 220, 230, 250, 485, 1067
AccIII TCCGGA 2 cut(s) 163, 403
AciI CCGC 7 cut(s) 34, 195, 303, 422, 472, 525, 960
AclWI GGATC 3 cut(s) 12, 395, 923
AcoI YGGCCR 1 cut(s) 545
AcsI RAATTY 3 cut(s) 26, 68, 681
AcvI CACGTG 1 cut(s) 175
AcyI GRCGYC 2 cut(s) 576, 944
AfaI GTAC 5 cut(s) 215, 797, 965, 974, 1016
AfiI CCNNNNNNNGG 5 cut(s) 410, 417, 456, 550, 1083
AflIII ACRYGT 2 cut(s) 174, 210
AgsI TTSAA 1 cut(s) 832
AhlI ACTAGT 1 cut(s) 731
AjuI GAANNNNNNNTTGG 2 cut(s) 731, 763
AleI CACNNNNGTG 1 cut(s) 209
AluBI AGCT 2 cut(s) 454, 860
AluI AGCT 2 cut(s) 454, 860
Alw21I GWGCWC 1 cut(s) 456
Alw26I GTCTC 2 cut(s) 140, 240
AlwI GGATC 3 cut(s) 12, 395, 923
Ama87I CYCGRG 3 cut(s) 143, 440, 449
Aor13HI TCCGGA 2 cut(s) 163, 403
AoxI GGCC 6 cut(s) 136, 408, 419, 545, 580, 820
ApeKI GCWGC 3 cut(s) 491, 809, 1025
ApoI RAATTY 3 cut(s) 26, 68, 681
AsiSI GCGATCGC 1 cut(s) 489
AspLEI GCGC 3 cut(s) 171, 578, 1069
AspS9I GGNCC 3 cut(s) 137, 462, 842
AsuC2I CCSGG 1 cut(s) 315
AsuHPI GGTGA 5 cut(s) 98, 673, 679, 754, 1066
AvaI CYCGRG 3 cut(s) 143, 440, 449
AvaII GGWCC 2 cut(s) 462, 842
BaeGI GKGCMC 1 cut(s) 632
BanI GGYRCC 1 cut(s) 575
BanII GRGCYC 2 cut(s) 449, 456
BbrPI CACGTG 1 cut(s) 175
Bbv12I GWGCWC 1 cut(s) 456
BbvI GCAGC 3 cut(s) 478, 796, 1037
BccI CCATC 1 cut(s) 521
BceAI ACGGC 2 cut(s) 512, 783
BclI TGATCA 1 cut(s) 990
BcnI CCSGG 1 cut(s) 315
BcoDI GTCTC 2 cut(s) 140, 240
BcuI ACTAGT 1 cut(s) 731
BfaI CTAG 1 cut(s) 732
BfoI RGCGCY 2 cut(s) 172, 579
BisI GCNGC 5 cut(s) 422, 492, 525, 810, 1026
BlsI GCNGC 5 cut(s) 423, 493, 526, 811, 1027
Bme1390I CCNGG 1 cut(s) 315
Bme18I GGWCC 2 cut(s) 462, 842
BmeT110I CYCGRG 3 cut(s) 143, 440, 449
BmgT120I GGNCC 3 cut(s) 137, 462, 842
BmiI GGNNCC 2 cut(s) 577, 844
BmrFI CCNGG 1 cut(s) 315
BmsI GCATC 2 cut(s) 426, 664
BpmI CTGGAG 1 cut(s) 876
BpuMI CCSGG 1 cut(s) 315
BsaAI YACGTR 2 cut(s) 175, 211
BsaBI GATNNNNATC 2 cut(s) 336, 342
BsaHI GRCGYC 2 cut(s) 576, 944
BsaWI WCCGGW 4 cut(s) 163, 403, 456, 658
Bsc4I CCNNNNNNNGG 5 cut(s) 410, 417, 456, 550, 1083
Bse118I RCCGGY 3 cut(s) 547, 572, 578
Bse8I GATNNNNATC 2 cut(s) 336, 342
BseAI TCCGGA 2 cut(s) 163, 403
BseGI GGATG 4 cut(s) 52, 151, 468, 655
BseJI GATNNNNATC 2 cut(s) 336, 342
BseLI CCNNNNNNNGG 5 cut(s) 410, 417, 456, 550, 1083
BseMII CTCAG 2 cut(s) 36, 338
BseSI GKGCMC 1 cut(s) 632
BseX3I CGGCCG 1 cut(s) 545
BseXI GCAGC 3 cut(s) 478, 796, 1037
BsgI GTGCAG 2 cut(s) 229, 277
Bsh1236I CGCG 5 cut(s) 220, 230, 250, 485, 1067
Bsh1285I CGRYCG 2 cut(s) 489, 548
BshFI GGCC 6 cut(s) 138, 410, 421, 547, 582, 822
BshNI GGYRCC 1 cut(s) 575
BsiEI CGRYCG 2 cut(s) 489, 548
BsiHKAI GWGCWC 1 cut(s) 456
BsiHKCI CYCGRG 3 cut(s) 143, 440, 449
BslFI GGGAC 2 cut(s) 275, 828
BslI CCNNNNNNNGG 5 cut(s) 410, 417, 456, 550, 1083
BsmAI GTCTC 2 cut(s) 140, 240
BsmFI GGGAC 2 cut(s) 275, 828
BsnI GGCC 6 cut(s) 138, 410, 421, 547, 582, 822
BsoBI CYCGRG 3 cut(s) 143, 440, 449
Bsp1286I GDGCHC 3 cut(s) 449, 456, 632
Bsp13I TCCGGA 2 cut(s) 163, 403
Bsp1407I TGTACA 2 cut(s) 213, 795
Bsp143I GATC 7 cut(s) 4, 337, 400, 486, 915, 948, 990
Bsp68I TCGCGA 1 cut(s) 230
BspACI CCGC 7 cut(s) 34, 195, 303, 422, 472, 525, 960
BspANI GGCC 6 cut(s) 138, 410, 421, 547, 582, 822
BspCNI CTCAG 2 cut(s) 35, 339
BspEI TCCGGA 2 cut(s) 163, 403
BspFNI CGCG 5 cut(s) 220, 230, 250, 485, 1067
BspLI GGNNCC 2 cut(s) 577, 844
BspPI GGATC 3 cut(s) 12, 395, 923
BspT107I GGYRCC 1 cut(s) 575
BsrBI CCGCTC 1 cut(s) 424
BsrFI RCCGGY 3 cut(s) 547, 572, 578
BsrGI TGTACA 2 cut(s) 213, 795
BssAI RCCGGY 3 cut(s) 547, 572, 578
BssMI GATC 7 cut(s) 4, 337, 400, 486, 915, 948, 990
BssNI GRCGYC 2 cut(s) 576, 944
Bst4CI ACNGT 2 cut(s) 935, 1078
Bst6I CTCTTC 3 cut(s) 389, 878, 1064
BstACI GRCGYC 2 cut(s) 576, 944
BstAUI TGTACA 2 cut(s) 213, 795
BstBAI YACGTR 2 cut(s) 175, 211
BstC8I GCNNGC 2 cut(s) 248, 580
BstDEI CTNAG 2 cut(s) 22, 347
BstF5I GGATG 4 cut(s) 52, 151, 468, 655
BstFNI CGCG 5 cut(s) 220, 230, 250, 485, 1067
BstH2I RGCGCY 2 cut(s) 172, 579
BstHHI GCGC 3 cut(s) 171, 578, 1069
BstKTI GATC 7 cut(s) 7, 340, 403, 489, 918, 951, 993
BstMAI GTCTC 2 cut(s) 140, 240
BstMBI GATC 7 cut(s) 4, 337, 400, 486, 915, 948, 990
BstMCI CGRYCG 2 cut(s) 489, 548
BstMWI GCNNNNNNNGC 5 cut(s) 491, 515, 524, 584, 1031
BstSCI CCNGG 1 cut(s) 313
BstSLI GKGCMC 1 cut(s) 632
BstUI CGCG 5 cut(s) 220, 230, 250, 485, 1067
BstV1I GCAGC 3 cut(s) 478, 796, 1037
BstX2I RGATCY 1 cut(s) 915
BstYI RGATCY 1 cut(s) 915
BstZI CGGCCG 1 cut(s) 545
BsuRI GGCC 6 cut(s) 138, 410, 421, 547, 582, 822
BtgZI GCGATG 1 cut(s) 499
BtsCI GGATG 4 cut(s) 52, 151, 468, 655
BtsI GCAGTG 1 cut(s) 777
BtsIMutI CAGTG 1 cut(s) 777
BtuMI TCGCGA 1 cut(s) 230
Cac8I GCNNGC 2 cut(s) 248, 580
CfoI GCGC 3 cut(s) 171, 578, 1069
Cfr10I RCCGGY 3 cut(s) 547, 572, 578
Cfr13I GGNCC 3 cut(s) 137, 462, 842
CseI GACGC 1 cut(s) 933
Csp6I GTAC 5 cut(s) 214, 796, 964, 973, 1015
CviAII CATG 2 cut(s) 496, 702
CviQI GTAC 5 cut(s) 214, 796, 964, 973, 1015
DdeI CTNAG 2 cut(s) 22, 347
DinI GGCGCC 1 cut(s) 577
DpnI GATC 7 cut(s) 6, 339, 402, 488, 917, 950, 992
DpnII GATC 7 cut(s) 4, 337, 400, 486, 915, 948, 990
EaeI YGGCCR 1 cut(s) 545
EagI CGGCCG 1 cut(s) 545
Eam1104I CTCTTC 3 cut(s) 389, 878, 1064
EarI CTCTTC 3 cut(s) 389, 878, 1064
Ecl136II GAGCTC 1 cut(s) 454
EclXI CGGCCG 1 cut(s) 545
Eco24I GRGCYC 2 cut(s) 449, 456
Eco32I GATATC 1 cut(s) 1048
Eco47I GGWCC 2 cut(s) 462, 842
Eco52I CGGCCG 1 cut(s) 545
Eco53kI GAGCTC 1 cut(s) 454
Eco72I CACGTG 1 cut(s) 175
Eco88I CYCGRG 3 cut(s) 143, 440, 449
EcoICRI GAGCTC 1 cut(s) 454
EcoRV GATATC 1 cut(s) 1048
EcoT38I GRGCYC 2 cut(s) 449, 456
EgeI GGCGCC 1 cut(s) 577
EheI GGCGCC 1 cut(s) 577
FaeI CATG 2 cut(s) 499, 705
FaiI YATR 8 cut(s) 38, 208, 275, 371, 497, 703, 931, 953
FaqI GGGAC 2 cut(s) 275, 828
FatI CATG 2 cut(s) 495, 701
FauI CCCGC 2 cut(s) 310, 953
FbaI TGATCA 1 cut(s) 990
Fnu4HI GCNGC 5 cut(s) 422, 492, 525, 810, 1026
FokI GGATG 4 cut(s) 39, 138, 455, 642
FriOI GRGCYC 2 cut(s) 449, 456
Fsp4HI GCNGC 5 cut(s) 422, 492, 525, 810, 1026
FspBI CTAG 1 cut(s) 732
GlaI GCGC 3 cut(s) 170, 577, 1068
GluI GCNGC 5 cut(s) 422, 492, 525, 810, 1026
GsuI CTGGAG 1 cut(s) 876
HaeII RGCGCY 2 cut(s) 172, 579
HaeIII GGCC 6 cut(s) 138, 410, 421, 547, 582, 822
HgaI GACGC 1 cut(s) 933
HhaI GCGC 3 cut(s) 171, 578, 1069
Hin1I GRCGYC 2 cut(s) 576, 944
Hin1II CATG 2 cut(s) 499, 705
Hin6I GCGC 3 cut(s) 169, 576, 1067
HinP1I GCGC 3 cut(s) 169, 576, 1067
HinfI GANTC 5 cut(s) 41, 310, 379, 752, 889
HphI GGTGA 5 cut(s) 98, 673, 679, 754, 1066
Hpy166II GTNNAC 4 cut(s) 214, 216, 798, 973
Hpy188I TCNGA 6 cut(s) 25, 348, 393, 888, 894, 1093
Hpy188III TCNNGA 5 cut(s) 155, 164, 229, 404, 442
Hpy8I GTNNAC 4 cut(s) 214, 216, 798, 973
Hpy99I CGWCG 5 cut(s) 230, 533, 536, 949, 1013
HpyAV CCTTC 4 cut(s) 246, 475, 733, 856
HpyCH4III ACNGT 2 cut(s) 935, 1078
HpyCH4IV ACGT 3 cut(s) 174, 210, 288
HpyCH4V TGCA 6 cut(s) 191, 246, 258, 499, 725, 812
HpyF10VI GCNNNNNNNGC 5 cut(s) 491, 515, 524, 584, 1031
HpyF3I CTNAG 2 cut(s) 22, 347
HpySE526I ACGT 3 cut(s) 174, 210, 288
Hsp92I GRCGYC 2 cut(s) 576, 944
Hsp92II CATG 2 cut(s) 499, 705
HspAI GCGC 3 cut(s) 169, 576, 1067
KasI GGCGCC 1 cut(s) 575
Kpn2I TCCGGA 2 cut(s) 163, 403
KroI GCCGGC 1 cut(s) 578
KroNI GCCGGC 1 cut(s) 580
Ksp22I TGATCA 1 cut(s) 990
Kzo9I GATC 7 cut(s) 4, 337, 400, 486, 915, 948, 990
LmnI GCTCC 4 cut(s) 166, 413, 459, 857
Lsp1109I GCAGC 3 cut(s) 478, 796, 1037
LweI GCATC 2 cut(s) 426, 664
MaeI CTAG 1 cut(s) 732
MaeII ACGT 3 cut(s) 174, 210, 288
MaeIII GTNAC 1 cut(s) 104
MalI GATC 7 cut(s) 6, 339, 402, 488, 917, 950, 992
MbiI CCGCTC 1 cut(s) 424
MboI GATC 7 cut(s) 4, 337, 400, 486, 915, 948, 990
MboII GAAGA 5 cut(s) 8, 373, 406, 865, 1051
MflI RGATCY 1 cut(s) 915
MhlI GDGCHC 3 cut(s) 449, 456, 632
MluCI AATT 5 cut(s) 26, 68, 500, 664, 681
Mly113I GGCGCC 1 cut(s) 576
MlyI GAGTC 1 cut(s) 761
MnlI CCTC 9 cut(s) 31, 94, 171, 303, 400, 411, 812, 1067, 1073
MroI TCCGGA 2 cut(s) 163, 403
MroNI GCCGGC 1 cut(s) 578
MseI TTAA 2 cut(s) 240, 342
MslI CAYNNNNRTG 2 cut(s) 209, 700
MspR9I CCNGG 1 cut(s) 315
MvnI CGCG 5 cut(s) 220, 230, 250, 485, 1067
MwoI GCNNNNNNNGC 5 cut(s) 491, 515, 524, 584, 1031
NaeI GCCGGC 1 cut(s) 580
NarI GGCGCC 1 cut(s) 576
NciI CCSGG 1 cut(s) 315
NdeII GATC 7 cut(s) 4, 337, 400, 486, 915, 948, 990
NgoMIV GCCGGC 1 cut(s) 578
NlaIII CATG 2 cut(s) 499, 705
NlaIV GGNNCC 2 cut(s) 577, 844
NmuCI GTSAC 1 cut(s) 104
NruI TCGCGA 1 cut(s) 230
OliI CACNNNNGTG 1 cut(s) 209
PaeR7I CTCGAG 1 cut(s) 440
PcsI WCGNNNNNNNCGW 2 cut(s) 447, 528
PdiI GCCGGC 1 cut(s) 580
PfeI GAWTC 4 cut(s) 41, 310, 379, 889
PkrI GCNGC 5 cut(s) 423, 493, 526, 811, 1027
Ple19I CGATCG 1 cut(s) 489
PleI GAGTC 1 cut(s) 760
PluTI GGCGCC 1 cut(s) 579
PmaCI CACGTG 1 cut(s) 175
PmlI CACGTG 1 cut(s) 175
PpsI GAGTC 1 cut(s) 760
Ppu21I YACGTR 2 cut(s) 175, 211
PsiI TTATAA 1 cut(s) 275
Psp124BI GAGCTC 1 cut(s) 456
PspCI CACGTG 1 cut(s) 175
PspN4I GGNNCC 2 cut(s) 577, 844
PspPI GGNCC 3 cut(s) 137, 462, 842
PsuI RGATCY 1 cut(s) 915
PvuI CGATCG 1 cut(s) 489
RgaI GCGATCGC 1 cut(s) 489
RruI TCGCGA 1 cut(s) 230
RsaI GTAC 5 cut(s) 215, 797, 965, 974, 1016
RsaNI GTAC 5 cut(s) 214, 796, 964, 973, 1015
RseI CAYNNNNRTG 2 cut(s) 209, 700
SacI GAGCTC 1 cut(s) 456
SaqAI TTAA 2 cut(s) 240, 342
SatI GCNGC 5 cut(s) 422, 492, 525, 810, 1026
Sau3AI GATC 7 cut(s) 4, 337, 400, 486, 915, 948, 990
Sau96I GGNCC 3 cut(s) 137, 462, 842
SchI GAGTC 1 cut(s) 761
ScrFI CCNGG 1 cut(s) 315
SduI GDGCHC 3 cut(s) 449, 456, 632
SfaAI GCGATCGC 1 cut(s) 489
SfaNI GCATC 2 cut(s) 426, 664
SfoI GGCGCC 1 cut(s) 577
Sfr274I CTCGAG 1 cut(s) 440
SgfI GCGATCGC 1 cut(s) 489
SgrAI CRCCGGYG 1 cut(s) 572
SinI GGWCC 2 cut(s) 462, 842
SlaI CTCGAG 1 cut(s) 440
SmiMI CAYNNNNRTG 2 cut(s) 209, 700
SmlI CTYRAG 1 cut(s) 440
SmoI CTYRAG 1 cut(s) 440
SpeI ACTAGT 1 cut(s) 731
Sse9I AATT 5 cut(s) 26, 68, 500, 664, 681
SsiI CCGC 7 cut(s) 34, 195, 303, 422, 472, 525, 960
SspDI GGCGCC 1 cut(s) 575
SspMI CTAG 1 cut(s) 732
SstI GAGCTC 1 cut(s) 456
StyD4I CCNGG 1 cut(s) 313
TaaI ACNGT 2 cut(s) 935, 1078
TaiI ACGT 3 cut(s) 177, 213, 291
TaqI TCGA 3 cut(s) 330, 441, 947
TasI AATT 5 cut(s) 26, 68, 500, 664, 681
TatI WGTACW 3 cut(s) 213, 795, 1014
TauI GCSGC 2 cut(s) 424, 527
TfiI GAWTC 4 cut(s) 41, 310, 379, 889
Tru1I TTAA 2 cut(s) 240, 342
Tru9I TTAA 2 cut(s) 240, 342
TscAI CASTG 1 cut(s) 777
TseFI GTSAC 1 cut(s) 104
TseI GCWGC 3 cut(s) 491, 809, 1025
Tsp45I GTSAC 1 cut(s) 104
TspDTI ATGAA 6 cut(s) 41, 80, 380, 457, 607, 690
TspGWI ACGGA 2 cut(s) 910, 995
TspRI CASTG 1 cut(s) 777
VpaK11BI GGWCC 2 cut(s) 462, 842
XapI RAATTY 3 cut(s) 26, 68, 681
XhoI CTCGAG 1 cut(s) 440
XspI CTAG 1 cut(s) 732
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.