Rw6G029870

Belongs to the BI1 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr6
OG0006198
Physical Location & Seq
Forward (+)
53922420 .. 53924441
2022 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw6G029870.1

Sequence Viewer

Length: 666 bp
ATGAAGACATGGTTGAGCCGGAATAATGACTTGGAAGCCGGAGCGACCCCTTTACTCTACCCTTCGATGAAGGAGAGGCCGGAGCTCCGATGGGCCTTCATCCGCAAAGTCTATGCCATCCTCACCTTTCAGATACTCCTCACCATCCCCGTTGTCGCCACCGTCTACTTTAATCCTGCAATCGCCGTATTCCTTATCGAAACTTGGCTCGGATGCAAACATCACCCGCTAAATTACGTGCACCTTGGGGCTTTCACTATATGTGAGGCCCTCATGGTCGGAGTAAGTTGTGCATTTACCAGCAGGAAGGTGGTTTTGGAGGCTGCGATTCTAACTGCTGTGATTTTTCTAAGTCTGACCTTGTACACCTTTTGCGCCGAAAGGAGAGGCCATGACTTCAACTTCTTGGGTCCTTTCTTGTTTGCATCCCTGCTGGCTCTGCTTGTCTTTGGAGTGATACAGATTTTCCTCCCTCTTGGTAAGACTAGTCATATGATATACGGGATTGTGGGAATACTCATATTCTGTGGCTACATTGTCCATGACACAGATGAATTGATCAAGCACTACGAGTACGATGAGTACATTTTGGCGGCCATCGACTTGTACATATTTGGATCTCCTCAACTTGTTTCTCAGGTTTCTCGAGTTGATGAAAGATGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Bax1-I

Protein Analysis

221

Amino Acids

25.02

Weight (kDa)

6.37

Isoelectric Point (pI)

31.35

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Bax1-I PF01027 32 - 204 3.2e-38 Inhibitor of apoptosis-promoting Bax1
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 165
AciI CCGC 3 cut(s) 103, 227, 593
AclWI GGATC 1 cut(s) 625
AcoI YGGCCR 1 cut(s) 594
AfaI GTAC 4 cut(s) 365, 575, 584, 608
AgsI TTSAA 1 cut(s) 400
AhlI ACTAGT 1 cut(s) 485
AjuI GAANNNNNNNTTGG 4 cut(s) 14, 46, 299, 331
AluBI AGCT 1 cut(s) 85
AluI AGCT 1 cut(s) 85
Alw21I GWGCWC 2 cut(s) 87, 243
Alw44I GTGCAC 1 cut(s) 239
AlwI GGATC 1 cut(s) 625
Ama87I CYCGRG 1 cut(s) 645
AoxI GGCC 5 cut(s) 77, 93, 267, 388, 594
ApaLI GTGCAC 1 cut(s) 239
ApeKI GCWGC 1 cut(s) 323
AspLEI GCGC 1 cut(s) 377
AspS9I GGNCC 3 cut(s) 93, 268, 410
AsuHPI GGTGA 3 cut(s) 115, 133, 215
AvaI CYCGRG 1 cut(s) 645
AvaII GGWCC 1 cut(s) 410
BaeGI GKGCMC 1 cut(s) 243
BanII GRGCYC 1 cut(s) 87
BbsI GAAGAC 1 cut(s) 11
Bbv12I GWGCWC 2 cut(s) 87, 243
BbvI GCAGC 1 cut(s) 310
BccI CCATC 4 cut(s) 84, 125, 152, 605
BceAI ACGGC 1 cut(s) 170
BclI TGATCA 1 cut(s) 558
BcuI ACTAGT 1 cut(s) 485
BfaI CTAG 1 cut(s) 486
BisI GCNGC 2 cut(s) 324, 594
BlsI GCNGC 2 cut(s) 325, 595
Bme18I GGWCC 1 cut(s) 410
BmeT110I CYCGRG 1 cut(s) 645
BmgT120I GGNCC 3 cut(s) 93, 268, 410
BmiI GGNNCC 1 cut(s) 411
BmsI GCATC 3 cut(s) 203, 434, 650
BpiI GAAGAC 1 cut(s) 11
BsaAI YACGTR 1 cut(s) 238
BsaJI CCNNGG 1 cut(s) 244
BseDI CCNNGG 1 cut(s) 244
BseGI GGATG 5 cut(s) 99, 117, 144, 218, 425
BseMII CTCAG 1 cut(s) 650
BseRI GAGGAG 2 cut(s) 128, 612
BseSI GKGCMC 1 cut(s) 243
BseXI GCAGC 1 cut(s) 310
BshFI GGCC 5 cut(s) 79, 95, 269, 390, 596
BsiHKAI GWGCWC 2 cut(s) 87, 243
BsiHKCI CYCGRG 1 cut(s) 645
BsiSI CCGG 3 cut(s) 19, 39, 80
BsnI GGCC 5 cut(s) 79, 95, 269, 390, 596
BsoBI CYCGRG 1 cut(s) 645
Bsp1286I GDGCHC 2 cut(s) 87, 243
Bsp1407I TGTACA 2 cut(s) 363, 606
Bsp143I GATC 2 cut(s) 558, 617
BspACI CCGC 3 cut(s) 103, 227, 593
BspANI GGCC 5 cut(s) 79, 95, 269, 390, 596
BspCNI CTCAG 1 cut(s) 649
BspLI GGNNCC 1 cut(s) 411
BspPI GGATC 1 cut(s) 625
BsrGI TGTACA 2 cut(s) 363, 606
BssECI CCNNGG 1 cut(s) 244
BssMI GATC 2 cut(s) 558, 617
BssT1I CCWWGG 1 cut(s) 244
Bst4CI ACNGT 1 cut(s) 163
BstAUI TGTACA 2 cut(s) 363, 606
BstBAI YACGTR 1 cut(s) 238
BstC8I GCNNGC 1 cut(s) 435
BstDEI CTNAG 2 cut(s) 350, 636
BstF5I GGATG 5 cut(s) 99, 117, 144, 218, 425
BstHHI GCGC 1 cut(s) 377
BstKTI GATC 2 cut(s) 561, 620
BstMBI GATC 2 cut(s) 558, 617
BstMWI GCNNNNNNNGC 1 cut(s) 439
BstSLI GKGCMC 1 cut(s) 243
BstV1I GCAGC 1 cut(s) 310
BstV2I GAAGAC 1 cut(s) 11
BstX2I RGATCY 1 cut(s) 617
BstYI RGATCY 1 cut(s) 617
BsuRI GGCC 5 cut(s) 79, 95, 269, 390, 596
BtsCI GGATG 5 cut(s) 99, 117, 144, 218, 425
Cac8I GCNNGC 1 cut(s) 435
CfoI GCGC 1 cut(s) 377
Cfr13I GGNCC 3 cut(s) 93, 268, 410
Csp6I GTAC 4 cut(s) 364, 574, 583, 607
CviAII CATG 4 cut(s) 9, 274, 392, 542
CviQI GTAC 4 cut(s) 364, 574, 583, 607
DdeI CTNAG 2 cut(s) 350, 636
DpnI GATC 2 cut(s) 560, 619
DpnII GATC 2 cut(s) 558, 617
EaeI YGGCCR 1 cut(s) 594
Ecl136II GAGCTC 1 cut(s) 85
Eco130I CCWWGG 1 cut(s) 244
Eco24I GRGCYC 1 cut(s) 87
Eco47I GGWCC 1 cut(s) 410
Eco53kI GAGCTC 1 cut(s) 85
Eco88I CYCGRG 1 cut(s) 645
EcoICRI GAGCTC 1 cut(s) 85
EcoO109I RGGNCCY 2 cut(s) 268, 410
EcoT14I CCWWGG 1 cut(s) 244
EcoT38I GRGCYC 1 cut(s) 87
ErhI CCWWGG 1 cut(s) 244
FaeI CATG 4 cut(s) 12, 277, 395, 545
FatI CATG 4 cut(s) 8, 273, 391, 541
FauI CCCGC 1 cut(s) 234
FauNDI CATATG 1 cut(s) 492
FbaI TGATCA 1 cut(s) 558
FblI GTMKAC 1 cut(s) 165
Fnu4HI GCNGC 2 cut(s) 324, 594
FokI GGATG 5 cut(s) 86, 104, 131, 225, 412
FriOI GRGCYC 1 cut(s) 87
Fsp4HI GCNGC 2 cut(s) 324, 594
FspBI CTAG 1 cut(s) 486
GlaI GCGC 1 cut(s) 376
GluI GCNGC 2 cut(s) 324, 594
HaeIII GGCC 5 cut(s) 79, 95, 269, 390, 596
HapII CCGG 3 cut(s) 19, 39, 80
HhaI GCGC 1 cut(s) 377
Hin1II CATG 4 cut(s) 12, 277, 395, 545
Hin6I GCGC 1 cut(s) 375
HinP1I GCGC 1 cut(s) 375
HinfI GANTC 1 cut(s) 328
HpaII CCGG 3 cut(s) 19, 39, 80
HphI GGTGA 3 cut(s) 115, 133, 215
Hpy166II GTNNAC 3 cut(s) 166, 241, 366
Hpy188I TCNGA 5 cut(s) 89, 132, 212, 281, 357
Hpy188III TCNNGA 1 cut(s) 645
Hpy8I GTNNAC 3 cut(s) 166, 241, 366
HpyAV CCTTC 4 cut(s) 64, 72, 106, 301
HpyCH4III ACNGT 1 cut(s) 163
HpyCH4IV ACGT 1 cut(s) 237
HpyCH4V TGCA 5 cut(s) 179, 216, 241, 293, 425
HpyF10VI GCNNNNNNNGC 1 cut(s) 439
HpyF3I CTNAG 2 cut(s) 350, 636
HpySE526I ACGT 1 cut(s) 237
Hsp92II CATG 4 cut(s) 12, 277, 395, 545
HspAI GCGC 1 cut(s) 375
Ksp22I TGATCA 1 cut(s) 558
Kzo9I GATC 2 cut(s) 558, 617
LmnI GCTCC 3 cut(s) 41, 82, 90
LpnPI CCDG 9 cut(s) 32, 52, 93, 189, 289, 313, 419, 443, 623
Lsp1109I GCAGC 1 cut(s) 310
LweI GCATC 3 cut(s) 203, 434, 650
MaeI CTAG 1 cut(s) 486
MaeII ACGT 1 cut(s) 237
MalI GATC 2 cut(s) 560, 619
MboI GATC 2 cut(s) 558, 617
MboII GAAGA 1 cut(s) 16
MflI RGATCY 1 cut(s) 617
MhlI GDGCHC 2 cut(s) 87, 243
MluCI AATT 2 cut(s) 232, 554
MmeI TCCRAC 1 cut(s) 259
MseI TTAA 1 cut(s) 171
MspI CCGG 3 cut(s) 19, 39, 80
MwoI GCNNNNNNNGC 1 cut(s) 439
NdeI CATATG 1 cut(s) 492
NdeII GATC 2 cut(s) 558, 617
NlaIII CATG 4 cut(s) 12, 277, 395, 545
NlaIV GGNNCC 1 cut(s) 411
PaeR7I CTCGAG 1 cut(s) 645
PfeI GAWTC 1 cut(s) 328
PkrI GCNGC 2 cut(s) 325, 595
Ppu21I YACGTR 1 cut(s) 238
PpuMI RGGWCCY 1 cut(s) 410
Psp124BI GAGCTC 1 cut(s) 87
Psp5II RGGWCCY 1 cut(s) 410
PspN4I GGNNCC 1 cut(s) 411
PspPI GGNCC 3 cut(s) 93, 268, 410
PspPPI RGGWCCY 1 cut(s) 410
PsuI RGATCY 1 cut(s) 617
RsaI GTAC 4 cut(s) 365, 575, 584, 608
RsaNI GTAC 4 cut(s) 364, 574, 583, 607
SacI GAGCTC 1 cut(s) 87
SaqAI TTAA 1 cut(s) 171
SatI GCNGC 2 cut(s) 324, 594
Sau3AI GATC 2 cut(s) 558, 617
Sau96I GGNCC 3 cut(s) 93, 268, 410
SduI GDGCHC 2 cut(s) 87, 243
SetI ASST 8 cut(s) 87, 128, 240, 246, 312, 362, 371, 642
SfaNI GCATC 3 cut(s) 203, 434, 650
Sfr274I CTCGAG 1 cut(s) 645
SinI GGWCC 1 cut(s) 410
SlaI CTCGAG 1 cut(s) 645
SmlI CTYRAG 1 cut(s) 645
SmoI CTYRAG 1 cut(s) 645
SpeI ACTAGT 1 cut(s) 485
Sse9I AATT 2 cut(s) 232, 554
SsiI CCGC 3 cut(s) 103, 227, 593
SspMI CTAG 1 cut(s) 486
SstI GAGCTC 1 cut(s) 87
StyI CCWWGG 1 cut(s) 244
TaaI ACNGT 1 cut(s) 163
TaiI ACGT 1 cut(s) 240
TaqI TCGA 4 cut(s) 65, 198, 600, 646
TasI AATT 2 cut(s) 232, 554
TatI WGTACW 3 cut(s) 363, 582, 606
TauI GCSGC 1 cut(s) 596
TfiI GAWTC 1 cut(s) 328
Tru1I TTAA 1 cut(s) 171
Tru9I TTAA 1 cut(s) 171
TseI GCWGC 1 cut(s) 323
TspDTI ATGAA 4 cut(s) 17, 83, 88, 567
VneI GTGCAC 1 cut(s) 239
VpaK11BI GGWCC 1 cut(s) 410
XcmI CCANNNNNNNNNTGG 1 cut(s) 307
XhoI CTCGAG 1 cut(s) 645
XmiI GTMKAC 1 cut(s) 165
XspI CTAG 1 cut(s) 486
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.