Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb2

Orthogroup ID

OG0003437

Physical Location & Seq

Genomic Coordinates Reverse (-)

19142897 .. 19147782

Gene Structure 4886 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_2g23400.t3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2427 bp

ATGTCTTCTCATACCACTCACCACCTCGTTCTCTCGTTCCAAACTTCACTACCCTCGTCATCCTCATCGTCTGGGTCTATACCTTCAGGTTTCTCCGGAGATGAAGACAGAAGGGTTCTTCCTTTAAGAAGCAGTGCGGTTTCTAAACCTCACACTCGATATGATGCGCCCGTGTTGCATAAGATTGTGAGAGATGATACCCAACAAAATGAAGAAACTCCTCTTACCAAGGATGACTCTGCTGTCTCTGCATCGACCCAGATCATCAAGAAACATGTGGAGACGGTCAAGTCCATGCTGTCTTCTATGGAGGATGGAAGTATCAGCATATCAGCGTACGACACAGCATGGATTGCTTTGGTTGAAGACGTCAATGGAAGTGCTTCACCTCAGTTCCCTTCCAGCCTCGAATGGATTGCCAACAACCAGCTAGAAGATGGCTCTTGGGGCTACAAGGACCTCTTCTCTGCTCACGATCGACTCATCAGCACCCTCGCCTGCGTCGTTGCGTTAAAGTTGTGGAATCTCCACGCTGACAAATGCCACAAAGGAATGAAGTTTTTCAAGGAAAACCTACACAAGCTTGAGGACGAGAACAGTGAGCACATAATTGTAGGGTTTGAAGTTACATTCCCTTCTCTTCTGGAAATAGCTCGAAGGTTAAACCTTGACTTACCTGATGACACTCCTGTGTTGCATGACATCCATGCCCGTAGAGATTTGAAACTCTCAAAGATACCAAGGGACATACTGCACAATGTGGCCACATCACTGCTTCATAGCCTCGAAGGAATGGCAGGTCTCGACTGGGAAAAGCTTCTGAAACTCCAGTCTGAAGATGGGTCAATTCTGTTCTCTCCCGCGTCTACTGCCTACGCATTGCAGCAGACGAAGGATCGAAACTGCATGTCGTATCTGTCGAGACTAGTCCACAAGTTCAACGGAGGAGCCCCTAATGTGTATCCAGTCGACTTGTTCGAACGCCTGTGGGCAGTAGATCGGTTGCAGAGGTTAGGCTTGTCCAGATACTTGGAGCCGGAGATTAAGGAATGTATGAACTACGTATCAAGGTATTGGACGGAGAAAGGAATTTCTTGGGTGAGAAACTCGGAGCTTCCCGATCTTGATGACACATCAATGGGTTTTAGATTGCTCCGGTTGCATGGGCATAAGGTGTCGGCCGATGTATTTGAGCATTTTAAGAAAGGGAGTGAGTTCTTCTGCCATCCTGGAGAATTGAACAACGCTGTGACTGTAATACACAACTTGTATAGGGCAAGTCAGGTGGCATTTCCGGGAGAGAAGATCCTTGGGGATGCTAAAGAGTTTGCGACTAAGTTCCTAAGAAAGAAACAAGCTTCCAATGAGTTTACAGATAAATGGATCATTGCCAAAGACTTACTTGGAGAGGTGGGTTACGCATTGGATTTTCCATGGTATGCGAGCTTACCTCGACTGGATACAAGATTCTACATTGAACAGTATGGTGGTGAAGATGACGTTTGGATTGCCAAGACTCTATATAACATGCCCTGCATTAGCAATAATTTGTATCTCGAGCTGGCAAAGCTTGACTACAACGATTGCCAAACACTACATCTCAAGGAATGGAACAGCATTCAAAAGTGGTACAAAGAATGGAAACTCGGAGATTATGGATTGAGTGAAAAGAGTCTCCTCAGGGCTTATTTTGTTGCGGCAGCGAGCATTTTTGAACCCGAAAGAGCAAATGAGCGACTTGCATGGGCTAAAACGACATGCCTGGTTGATACGATTATGTCTTTTAAGGGAGAAACTGATGATAAATATAAGAAGGCCTTCGTTGATGAGTTCAAAACCTTCTCCACTATGCGAGACCATGAGAATGCAAGGAGGTTGTACAAAAACAAGTTTGCAGGGCAAGGAATCGTTGGAGCTTTATTGGCAACCATAAGCCAACTCTCATCGGCTACAATGGTGCTACATCGCCAAGACATTACTGAATCTCTATGTCAAGCTTGGGGAAAATGGCTAATGAAGTGGCAAGGAACATCGAAGAGGTACCAAGATGAGGCTGAGCTACTAGTGAAAATAATAAATCAAACCGCTGGCCTTCAAAATGAGTTGTTGTCCAACGATCCAGAATATGAGCAGCTGTTCAGCCTAATCAACAAAGTTTGCAATCAACTTCGTTTTTACCGAAACCAAAAAATCAAGGTAGGTGATAATGGCAACTGCGGAACAAAAATCAACATGACAACCCCAGAAATAGAATCATACATGCAGCAATTGGTGGGATTGGTGCTAGAAAAATCTTCAGATGACACAGTTTCCTTGATTAAGCAAACCTTCTTCACCGTAGCGAGGAGCTTTTACTATGCTACATGTTGTGACCCAGAAGTCATTAGCCACCATATTAACAAAGTTCTCTTTCAGCGAGCAATTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000287 GO:0001101 GO:0003674 GO:0003824 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006082 GO:0006629 GO:0006720 GO:0006721 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0008299 GO:0008610 GO:0009058 GO:0009507 GO:0009536 GO:0009685 GO:0009686 GO:0009719 GO:0009725 GO:0009739 GO:0009740 GO:0009755 GO:0009905 GO:0009987 GO:0010033 GO:0010476 GO:0010817 GO:0016053 GO:0016101 GO:0016102 GO:0016114 GO:0016853 GO:0016872 GO:0019752 GO:0023052 GO:0032870 GO:0033993 GO:0042221 GO:0042445 GO:0042446 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0046394 GO:0046872 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0065008 GO:0070887 GO:0071229 GO:0071310 GO:0071370 GO:0071396 GO:0071495 GO:0071704 GO:1901576 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

ko00904 ko01100 ko01110 map00904 map01100 map01110

Pfam Domains

Protein Families

Terpene_synth Terpene_synth_C

Protein Analysis

809

Amino Acids

92.13

Weight (kDa)

6.25

Isoelectric Point (pI)

38.59

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Terpene_synth	PF01397	259 - 465	2.2e-43	Terpene synthase, N-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

Tree File

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Orthologous Genes (Group: OG0003437)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G02780
fragaria_vesca	FvH4_2g23400 FvH4_2g23400 FvH4_2g23400 FvH4_2g23420 FvH4_2g23440 FvH4_2g23440 FvH4_2g23440
malus_domestica	MD03G1263500.v1.1 MD11G1208700.v1.1 MD11G1284300.v1.1
prunus_persica	Prupe.8G239900_v2.0.a1
pyrus_communis	pycom11g25170
rosa_chinensis	RchiOBHm_Chr6g0290871 RchiOBHm_Chr6g0290941
rosa_laevigata	RLG00000012165
rosa_multiflora	Rmu_sc0001577.1_g000003
rosa_roxburghii	Rroxscaffold_7G00176530 Rroxscaffold_7G00176670
rosa_rugosa	Rorug06G0215400 Rorug06G0215500 Rorug06G0215600 Rorug06G0215700 Rorug06G0215900 Rorug06G0216000 Rorug06G0216000
rosa_samantha	Rh6AG325900 Rh6AG326200 Rh6BG333600 Rh6BG333800 Rh6CG339300 Rh6CG339700 Rh6DG326600 Rh6DG327100
rosa_wichuraiana	Rw6G028340 Rw6G028360

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	3 cut(s)	242, 289, 2378
AatII	GACGTC	1 cut(s)	372
Acc36I	ACCTGC	1 cut(s)	788
Acc65I	GGTACC	1 cut(s)	2040
AccB1I	GGYRCC	1 cut(s)	2040
AccI	GTMKAC	2 cut(s)	866, 969
AccII	CGCG	1 cut(s)	863
AccIII	TCCGGA	1 cut(s)	95
AciI	CCGC	5 cut(s)	137, 861, 1697, 2085, 2217
AclWI	GGATC	4 cut(s)	903, 1300, 1391, 2111
AcoI	YGGCCR	2 cut(s)	762, 1179
AcsI	RAATTY	1 cut(s)	1089
AcuI	CTGAAG	3 cut(s)	69, 855, 2280
AcyI	GRCGYC	1 cut(s)	369
AdeI	CACNNNGTG	1 cut(s)	760
AfaI	GTAC	4 cut(s)	338, 1631, 1880, 2042
AfiI	CCNNNNNNNGG	2 cut(s)	2050, 2343
AflIII	ACRYGT	2 cut(s)	274, 2363
AhlI	ACTAGT	2 cut(s)	925, 2062
AjnI	CCWGG	2 cut(s)	1228, 1761
AleI	CACNNNNGTG	1 cut(s)	689
Alw21I	GWGCWC	1 cut(s)	606
Alw26I	GTCTC	6 cut(s)	250, 275, 806, 916, 1679, 1848
AlwI	GGATC	4 cut(s)	903, 1300, 1391, 2111
Ama87I	CYCGRG	1 cut(s)	1556
Aor13HI	TCCGGA	1 cut(s)	95
AoxI	GGCC	4 cut(s)	762, 1179, 1815, 2089
ApeKI	GCWGC	4 cut(s)	883, 1700, 2131, 2263
ApoI	RAATTY	1 cut(s)	1089
Asp700I	GAANNNNTTC	4 cut(s)	382, 560, 816, 1817
Asp718I	GGTACC	1 cut(s)	2040
AspLEI	GCGC	1 cut(s)	169
AspS9I	GGNCC	1 cut(s)	457
AsuC2I	CCSGG	1 cut(s)	1296
AsuHPI	GGTGA	6 cut(s)	11, 378, 1111, 1502, 2213, 2326
AsuII	TTCGAA	1 cut(s)	978
AvaI	CYCGRG	1 cut(s)	1556
AvaII	GGWCC	1 cut(s)	457
AxyI	CCTNAGG	1 cut(s)	1679
BalI	TGGCCA	1 cut(s)	764
BanI	GGYRCC	1 cut(s)	2040
BanII	GRGCYC	1 cut(s)	952
BbsI	GAAGAC	3 cut(s)	111, 294, 372
Bbv12I	GWGCWC	1 cut(s)	606
BbvI	GCAGC	4 cut(s)	895, 1712, 2143, 2275
BccI	CCATC	4 cut(s)	308, 431, 833, 1233
BcgI	CGANNNNNNTGC	2 cut(s)	398, 432
BciT130I	CCWGG	2 cut(s)	1230, 1763
BciVI	GTATCC	2 cut(s)	972, 1453
BcnI	CCSGG	1 cut(s)	1296
BcoDI	GTCTC	6 cut(s)	250, 275, 806, 916, 1679, 1848
BcuI	ACTAGT	2 cut(s)	925, 2062
BfaI	CTAG	4 cut(s)	431, 926, 2063, 2285
BfuAI	ACCTGC	1 cut(s)	788
BfuI	GTATCC	2 cut(s)	972, 1453
BisI	GCNGC	5 cut(s)	884, 1698, 1701, 2132, 2264
BlpI	GCTNAGC	1 cut(s)	2055
BlsI	GCNGC	5 cut(s)	885, 1699, 1702, 2133, 2265
Bme1390I	CCNGG	3 cut(s)	1230, 1296, 1763
Bme18I	GGWCC	1 cut(s)	457
BmeT110I	CYCGRG	1 cut(s)	1556
BmgT120I	GGNCC	1 cut(s)	457
BmiI	GGNNCC	3 cut(s)	949, 1035, 2042
BmrFI	CCNGG	3 cut(s)	1230, 1296, 1763
BmrI	ACTGGG	1 cut(s)	817
BmsI	GCATC	3 cut(s)	154, 260, 1306
BmuI	ACTGGG	1 cut(s)	817
BpiI	GAAGAC	3 cut(s)	111, 294, 372
BplI	GAGNNNNNCTC	2 cut(s)	1435, 1467
BpmI	CTGGAG	2 cut(s)	812, 1251
Bpu1102I	GCTNAGC	1 cut(s)	2055
Bpu14I	TTCGAA	1 cut(s)	978
BpuEI	CTTGAG	2 cut(s)	605, 1586
BpuMI	CCSGG	1 cut(s)	1296
BsaAI	YACGTR	1 cut(s)	1063
BsaHI	GRCGYC	1 cut(s)	369
BsaI	GGTCTC	2 cut(s)	806, 1848
BsaJI	CCNNGG	4 cut(s)	228, 740, 1309, 1433
BsaWI	WCCGGW	2 cut(s)	95, 1155
Bsc4I	CCNNNNNNNGG	2 cut(s)	2050, 2343
Bse1I	ACTGG	4 cut(s)	812, 829, 965, 1461
Bse21I	CCTNAGG	1 cut(s)	1679
Bse3DI	GCAATG	2 cut(s)	878, 1386
BseAI	TCCGGA	1 cut(s)	95
BseBI	CCWGG	2 cut(s)	1230, 1763
BseDI	CCNNGG	4 cut(s)	228, 740, 1309, 1433
BseGI	GGATG	6 cut(s)	59, 238, 319, 702, 1225, 1321
BseLI	CCNNNNNNNGG	2 cut(s)	2050, 2343
BseMI	GCAATG	2 cut(s)	878, 1386
BseMII	CTCAG	3 cut(s)	404, 1693, 2046
BseNI	ACTGG	4 cut(s)	812, 829, 965, 1461
BseRI	GAGGAG	4 cut(s)	210, 960, 1667, 2359
BseX3I	CGGCCG	1 cut(s)	1179
BseXI	GCAGC	4 cut(s)	895, 1712, 2143, 2275
BsgI	GTGCAG	1 cut(s)	737
Bsh1236I	CGCG	1 cut(s)	863
Bsh1285I	CGRYCG	2 cut(s)	478, 1182
BshFI	GGCC	4 cut(s)	764, 1181, 1817, 2091
BshNI	GGYRCC	1 cut(s)	2040
BsiEI	CGRYCG	2 cut(s)	478, 1182
BsiHKAI	GWGCWC	1 cut(s)	606
BsiHKCI	CYCGRG	1 cut(s)	1556
BsiSI	CCGG	4 cut(s)	96, 1037, 1156, 1295
BsiWI	CGTACG	1 cut(s)	336
BslFI	GGGAC	1 cut(s)	758
BslI	CCNNNNNNNGG	2 cut(s)	2050, 2343
BsmAI	GTCTC	6 cut(s)	250, 275, 806, 916, 1679, 1848
BsmBI	CGTCTC	1 cut(s)	275
BsmFI	GGGAC	1 cut(s)	758
BsmI	GAATGC	2 cut(s)	1617, 1870
BsnI	GGCC	4 cut(s)	764, 1181, 1817, 2091
Bso31I	GGTCTC	2 cut(s)	806, 1848
BsoBI	CYCGRG	1 cut(s)	1556
Bsp119I	TTCGAA	1 cut(s)	978
Bsp1286I	GDGCHC	2 cut(s)	606, 952
Bsp13I	TCCGGA	1 cut(s)	95
Bsp1407I	TGTACA	1 cut(s)	1878
Bsp143I	GATC	8 cut(s)	261, 475, 895, 997, 1120, 1305, 1383, 2116
Bsp1720I	GCTNAGC	1 cut(s)	2055
Bsp19I	CCATGG	1 cut(s)	1433
BspACI	CCGC	5 cut(s)	137, 861, 1697, 2085, 2217
BspANI	GGCC	4 cut(s)	764, 1181, 1817, 2091
BspCNI	CTCAG	3 cut(s)	403, 1692, 2047
BspEI	TCCGGA	1 cut(s)	95
BspFNI	CGCG	1 cut(s)	863
BspLI	GGNNCC	3 cut(s)	949, 1035, 2042
BspMI	ACCTGC	1 cut(s)	788
BspPI	GGATC	4 cut(s)	903, 1300, 1391, 2111
BspT104I	TTCGAA	1 cut(s)	978
BspT107I	GGYRCC	1 cut(s)	2040
BspTNI	GGTCTC	2 cut(s)	806, 1848
BsrDI	GCAATG	2 cut(s)	878, 1386
BsrGI	TGTACA	1 cut(s)	1878
BsrI	ACTGG	4 cut(s)	812, 829, 965, 1461
BssECI	CCNNGG	4 cut(s)	228, 740, 1309, 1433
BssMI	GATC	8 cut(s)	261, 475, 895, 997, 1120, 1305, 1383, 2116
BssNI	GRCGYC	1 cut(s)	369
BssT1I	CCWWGG	4 cut(s)	228, 740, 1309, 1433
Bst2UI	CCWGG	2 cut(s)	1230, 1763
Bst4CI	ACNGT	6 cut(s)	286, 599, 1255, 1482, 2308, 2338
Bst6I	CTCTTC	3 cut(s)	467, 645, 2030
BstACI	GRCGYC	1 cut(s)	369
BstAPI	GCANNNNNTGC	1 cut(s)	353
BstAUI	TGTACA	1 cut(s)	1878
BstBAI	YACGTR	1 cut(s)	1063
BstBI	TTCGAA	1 cut(s)	978
BstC8I	GCNNGC	6 cut(s)	499, 1444, 1563, 1705, 2089, 2418
BstDEI	CTNAG	5 cut(s)	390, 1335, 1343, 1679, 2055
BstDSI	CCRYGG	1 cut(s)	1433
BstF5I	GGATG	6 cut(s)	59, 238, 319, 702, 1225, 1321
BstFNI	CGCG	1 cut(s)	863
BstHHI	GCGC	1 cut(s)	169
BstKTI	GATC	8 cut(s)	264, 478, 898, 1000, 1123, 1308, 1386, 2119
BstMAI	GTCTC	6 cut(s)	250, 275, 806, 916, 1679, 1848
BstMBI	GATC	8 cut(s)	261, 475, 895, 997, 1120, 1305, 1383, 2116
BstMCI	CGRYCG	2 cut(s)	478, 1182
BstMWI	GCNNNNNNNGC	8 cut(s)	175, 248, 353, 447, 869, 1159, 1567, 1922
BstNI	CCWGG	2 cut(s)	1230, 1763
BstNSI	RCATGY	6 cut(s)	278, 910, 1531, 1761, 2263, 2367
BstSCI	CCNGG	3 cut(s)	1228, 1294, 1761
BstSNI	TACGTA	1 cut(s)	1063
BstUI	CGCG	1 cut(s)	863
BstV1I	GCAGC	4 cut(s)	895, 1712, 2143, 2275
BstV2I	GAAGAC	3 cut(s)	111, 294, 372
BstX2I	RGATCY	1 cut(s)	1305
BstXI	CCANNNNNNTGG	1 cut(s)	1030
BstYI	RGATCY	1 cut(s)	1305
BstZI	CGGCCG	1 cut(s)	1179
Bsu36I	CCTNAGG	1 cut(s)	1679
BsuI	GTATCC	2 cut(s)	972, 1453
BsuRI	GGCC	4 cut(s)	764, 1181, 1817, 2091
BtgI	CCRYGG	1 cut(s)	1433
BtgZI	GCGATG	1 cut(s)	1949
BtsCI	GGATG	6 cut(s)	59, 238, 319, 702, 1225, 1321
BtsI	GCAGTG	2 cut(s)	139, 770
BtsIMutI	CAGTG	3 cut(s)	139, 604, 770
BveI	ACCTGC	1 cut(s)	788
Cac8I	GCNNGC	6 cut(s)	499, 1444, 1563, 1705, 2089, 2418
CfoI	GCGC	1 cut(s)	169
Cfr13I	GGNCC	1 cut(s)	457
CseI	GACGC	2 cut(s)	490, 852
Csp6I	GTAC	4 cut(s)	337, 1630, 1879, 2041
CspCI	CAANNNNNGTGG	2 cut(s)	1266, 1301
CviQI	GTAC	4 cut(s)	337, 1630, 1879, 2041
DdeI	CTNAG	5 cut(s)	390, 1335, 1343, 1679, 2055
DpnI	GATC	8 cut(s)	263, 477, 897, 999, 1122, 1307, 1385, 2118
DpnII	GATC	8 cut(s)	261, 475, 895, 997, 1120, 1305, 1383, 2116
DraIII	CACNNNGTG	1 cut(s)	760
DrdI	GACNNNNNNGTC	3 cut(s)	242, 289, 2378
DseDI	GACNNNNNNGTC	3 cut(s)	242, 289, 2378
EaeI	YGGCCR	2 cut(s)	762, 1179
EagI	CGGCCG	1 cut(s)	1179
Eam1104I	CTCTTC	3 cut(s)	467, 645, 2030
EarI	CTCTTC	3 cut(s)	467, 645, 2030
EclXI	CGGCCG	1 cut(s)	1179
Eco105I	TACGTA	1 cut(s)	1063
Eco130I	CCWWGG	4 cut(s)	228, 740, 1309, 1433
Eco147I	AGGCCT	1 cut(s)	1817
Eco24I	GRGCYC	1 cut(s)	952
Eco31I	GGTCTC	2 cut(s)	806, 1848
Eco47I	GGWCC	1 cut(s)	457
Eco52I	CGGCCG	1 cut(s)	1179
Eco57I	CTGAAG	3 cut(s)	69, 855, 2280
Eco81I	CCTNAGG	1 cut(s)	1679
Eco88I	CYCGRG	1 cut(s)	1556
EcoO109I	RGGNCCY	1 cut(s)	457
EcoRII	CCWGG	2 cut(s)	1228, 1761
EcoT14I	CCWWGG	4 cut(s)	228, 740, 1309, 1433
EcoT38I	GRGCYC	1 cut(s)	952
ErhI	CCWWGG	4 cut(s)	228, 740, 1309, 1433
Esp3I	CGTCTC	1 cut(s)	275
FalI	AAGNNNNNCTT	8 cut(s)	446, 478, 1386, 1418, 1802, 1834, 2312, 2344
FaqI	GGGAC	1 cut(s)	758
FauI	CCCGC	1 cut(s)	868
FblI	GTMKAC	2 cut(s)	866, 969
Fnu4HI	GCNGC	5 cut(s)	884, 1698, 1701, 2132, 2264
FokI	GGATG	6 cut(s)	46, 245, 326, 689, 1212, 1328
FriOI	GRGCYC	1 cut(s)	952
Fsp4HI	GCNGC	5 cut(s)	884, 1698, 1701, 2132, 2264
FspBI	CTAG	4 cut(s)	431, 926, 2063, 2285
GlaI	GCGC	1 cut(s)	168
GluI	GCNGC	5 cut(s)	884, 1698, 1701, 2132, 2264
GsuI	CTGGAG	2 cut(s)	812, 1251
HaeIII	GGCC	4 cut(s)	764, 1181, 1817, 2091
HapII	CCGG	4 cut(s)	96, 1037, 1156, 1295
HgaI	GACGC	2 cut(s)	490, 852
HhaI	GCGC	1 cut(s)	169
Hin1I	GRCGYC	1 cut(s)	369
Hin6I	GCGC	1 cut(s)	167
HinP1I	GCGC	1 cut(s)	167
HincII	GTYRAC	1 cut(s)	970
HindII	GTYRAC	1 cut(s)	970
HindIII	AAGCTT	5 cut(s)	581, 815, 1356, 1568, 1995
HinfI	GANTC	9 cut(s)	236, 480, 523, 1467, 1516, 1672, 1905, 1982, 2252
HpaII	CCGG	4 cut(s)	96, 1037, 1156, 1295
HphI	GGTGA	6 cut(s)	11, 378, 1111, 1502, 2213, 2326
Hpy166II	GTNNAC	4 cut(s)	867, 931, 970, 1371
Hpy188I	TCNGA	5 cut(s)	822, 835, 1111, 1649, 2299
Hpy8I	GTNNAC	4 cut(s)	867, 931, 970, 1371
Hpy99I	CGWCG	1 cut(s)	506
HpyCH4III	ACNGT	6 cut(s)	286, 599, 1255, 1482, 2308, 2338
HpyCH4IV	ACGT	3 cut(s)	369, 1062, 1500
HpyF10VI	GCNNNNNNNGC	8 cut(s)	175, 248, 353, 447, 869, 1159, 1567, 1922
HpyF3I	CTNAG	5 cut(s)	390, 1335, 1343, 1679, 2055
HpySE526I	ACGT	3 cut(s)	369, 1062, 1500
Hsp92I	GRCGYC	1 cut(s)	369
HspAI	GCGC	1 cut(s)	167
Kpn2I	TCCGGA	1 cut(s)	95
KpnI	GGTACC	1 cut(s)	2044
Kzo9I	GATC	8 cut(s)	261, 475, 895, 997, 1120, 1305, 1383, 2116
LmnI	GCTCC	6 cut(s)	947, 1033, 1111, 1158, 1913, 2346
Lsp1109I	GCAGC	4 cut(s)	895, 1712, 2143, 2275
LweI	GCATC	3 cut(s)	154, 260, 1306
MaeI	CTAG	4 cut(s)	431, 926, 2063, 2285
MaeII	ACGT	3 cut(s)	369, 1062, 1500
MaeIII	GTNAC	4 cut(s)	625, 1249, 1415, 2369
MalI	GATC	8 cut(s)	263, 477, 897, 999, 1122, 1307, 1385, 2118
MboI	GATC	8 cut(s)	261, 475, 895, 997, 1120, 1305, 1383, 2116
MfeI	CAATTG	1 cut(s)	2267
MflI	RGATCY	1 cut(s)	1305
MhlI	GDGCHC	2 cut(s)	606, 952
MlsI	TGGCCA	1 cut(s)	764
MluCI	AATT	7 cut(s)	609, 846, 1089, 1235, 1546, 2267, 2421
MluNI	TGGCCA	1 cut(s)	764
MlyI	GAGTC	4 cut(s)	230, 474, 1510, 1681
MmeI	TCCRAC	2 cut(s)	1891, 2136
Mox20I	TGGCCA	1 cut(s)	764
MroI	TCCGGA	1 cut(s)	95
MroXI	GAANNNNTTC	4 cut(s)	382, 560, 816, 1817
MscI	TGGCCA	1 cut(s)	764
MseI	TTAA	9 cut(s)	125, 512, 662, 1044, 1200, 1785, 2319, 2397, 2425
MslI	CAYNNNNRTG	3 cut(s)	689, 1136, 1863
Msp20I	TGGCCA	1 cut(s)	764
MspA1I	CMGCKG	2 cut(s)	2087, 2134
MspI	CCGG	4 cut(s)	96, 1037, 1156, 1295
MspR9I	CCNGG	3 cut(s)	1230, 1296, 1763
MunI	CAATTG	1 cut(s)	2267
Mva1269I	GAATGC	2 cut(s)	1617, 1870
MvaI	CCWGG	2 cut(s)	1230, 1763
MvnI	CGCG	1 cut(s)	863
MwoI	GCNNNNNNNGC	8 cut(s)	175, 248, 353, 447, 869, 1159, 1567, 1922
NciI	CCSGG	1 cut(s)	1296
NcoI	CCATGG	1 cut(s)	1433
NdeII	GATC	8 cut(s)	261, 475, 895, 997, 1120, 1305, 1383, 2116
NlaIV	GGNNCC	3 cut(s)	949, 1035, 2042
NmuCI	GTSAC	2 cut(s)	1249, 2369
NspI	RCATGY	6 cut(s)	278, 910, 1531, 1761, 2263, 2367
NspV	TTCGAA	1 cut(s)	978
OliI	CACNNNNGTG	1 cut(s)	689
PaeR7I	CTCGAG	1 cut(s)	1556
PceI	AGGCCT	1 cut(s)	1817
PciI	ACATGT	2 cut(s)	274, 2363
PcsI	WCGNNNNNNNCGW	4 cut(s)	501, 917, 975, 2176
PctI	GAATGC	2 cut(s)	1617, 1870
PdmI	GAANNNNTTC	4 cut(s)	382, 560, 816, 1817
PfeI	GAWTC	5 cut(s)	523, 1467, 1905, 1982, 2252
Pfl23II	CGTACG	1 cut(s)	336
PfoI	TCCNGGA	2 cut(s)	1228, 1294
PkrI	GCNGC	5 cut(s)	885, 1699, 1702, 2133, 2265
Ple19I	CGATCG	1 cut(s)	478
PleI	GAGTC	4 cut(s)	230, 474, 1510, 1680
PpsI	GAGTC	4 cut(s)	230, 474, 1510, 1680
Ppu21I	YACGTR	1 cut(s)	1063
PpuMI	RGGWCCY	1 cut(s)	457
PscI	ACATGT	2 cut(s)	274, 2363
Psp5II	RGGWCCY	1 cut(s)	457
Psp6I	CCWGG	2 cut(s)	1228, 1761
PspGI	CCWGG	2 cut(s)	1228, 1761
PspLI	CGTACG	1 cut(s)	336
PspN4I	GGNNCC	3 cut(s)	949, 1035, 2042
PspPI	GGNCC	1 cut(s)	457
PspPPI	RGGWCCY	1 cut(s)	457
PsuI	RGATCY	1 cut(s)	1305
PvuI	CGATCG	1 cut(s)	478
PvuII	CAGCTG	1 cut(s)	2134
RsaI	GTAC	4 cut(s)	338, 1631, 1880, 2042
RsaNI	GTAC	4 cut(s)	337, 1630, 1879, 2041
RseI	CAYNNNNRTG	3 cut(s)	689, 1136, 1863
SalI	GTCGAC	1 cut(s)	968
SaqAI	TTAA	9 cut(s)	125, 512, 662, 1044, 1200, 1785, 2319, 2397, 2425
SatI	GCNGC	5 cut(s)	884, 1698, 1701, 2132, 2264
Sau3AI	GATC	8 cut(s)	261, 475, 895, 997, 1120, 1305, 1383, 2116
Sau96I	GGNCC	1 cut(s)	457
SchI	GAGTC	4 cut(s)	230, 474, 1510, 1681
ScrFI	CCNGG	3 cut(s)	1230, 1296, 1763
SduI	GDGCHC	2 cut(s)	606, 952
SfaNI	GCATC	3 cut(s)	154, 260, 1306
Sfr274I	CTCGAG	1 cut(s)	1556
SfuI	TTCGAA	1 cut(s)	978
SinI	GGWCC	1 cut(s)	457
SlaI	CTCGAG	1 cut(s)	1556
SmiMI	CAYNNNNRTG	3 cut(s)	689, 1136, 1863
SmlI	CTYRAG	3 cut(s)	584, 1556, 1601
SmoI	CTYRAG	3 cut(s)	584, 1556, 1601
SnaBI	TACGTA	1 cut(s)	1063
SpeI	ACTAGT	2 cut(s)	925, 2062
Sse9I	AATT	7 cut(s)	609, 846, 1089, 1235, 1546, 2267, 2421
SseBI	AGGCCT	1 cut(s)	1817
SsiI	CCGC	5 cut(s)	137, 861, 1697, 2085, 2217
SspMI	CTAG	4 cut(s)	431, 926, 2063, 2285
StuI	AGGCCT	1 cut(s)	1817
StyD4I	CCNGG	3 cut(s)	1228, 1294, 1761
StyI	CCWWGG	4 cut(s)	228, 740, 1309, 1433
TaaI	ACNGT	6 cut(s)	286, 599, 1255, 1482, 2308, 2338
TaiI	ACGT	3 cut(s)	372, 1065, 1503
TasI	AATT	7 cut(s)	609, 846, 1089, 1235, 1546, 2267, 2421
TatI	WGTACW	1 cut(s)	1878
TauI	GCSGC	1 cut(s)	1700
TfiI	GAWTC	5 cut(s)	523, 1467, 1905, 1982, 2252
Tru1I	TTAA	9 cut(s)	125, 512, 662, 1044, 1200, 1785, 2319, 2397, 2425
Tru9I	TTAA	9 cut(s)	125, 512, 662, 1044, 1200, 1785, 2319, 2397, 2425
TscAI	CASTG	3 cut(s)	139, 604, 777
TseFI	GTSAC	2 cut(s)	1249, 2369
TseI	GCWGC	4 cut(s)	883, 1700, 2131, 2263
Tsp45I	GTSAC	2 cut(s)	1249, 2369
TspDTI	ATGAA	6 cut(s)	117, 225, 569, 767, 1070, 2030
TspGWI	ACGGA	2 cut(s)	957, 1094
TspRI	CASTG	3 cut(s)	139, 604, 777
VpaK11BI	GGWCC	1 cut(s)	457
XapI	RAATTY	1 cut(s)	1089
XceI	RCATGY	6 cut(s)	278, 910, 1531, 1761, 2263, 2367
XcmI	CCANNNNNNNNNTGG	2 cut(s)	434, 836
XhoI	CTCGAG	1 cut(s)	1556
XmiI	GTMKAC	2 cut(s)	866, 969
XmnI	GAANNNNTTC	4 cut(s)	382, 560, 816, 1817
XspI	CTAG	4 cut(s)	431, 926, 2063, 2285
ZraI	GACGTC	1 cut(s)	370

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.