Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0003437

Physical Location & Seq

Genomic Coordinates Forward (+)

34428147 .. 34430197

Gene Structure 2051 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0215700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1578 bp

ATGGACAGGCAATTGTATCTGGCAGATATCCTTGGGGTGCAAAGGGTGGATAAACATGAGAACTATCTTGGCTTGCCTACCCATGTTGGAAGATCAAAGACAGCTGCACTCGCTTACTTGAAAGAGAAACTTACAAAGAAAGTCGTCAACTGGAGAGCCAAATTATTAAGCGGTGCAGGTAAAGAAATTTTAATTAAAGCTGTTACTCAAACCGTTCCAATGTATGTGATGAACTGCTATATGCTCCCTTTGGGTCTCTGTGATGATATGCATCAGTTATGTGCTGGTTTCTGGTGGGGGGATTCCGAGGAGAAAACTAAAATTCACTGGAGATCTTGGGAACGGTTATGTGTTTCTAAGAAGGAGGGTGGTATGGGCTTTAAGAACTTGCATTGGTTTAATAAGGCTATGTTGGCTAAACAAAGTTGGCGGTTGCTACAGAATCCAAATTCATTGCTAGCTAGATTGTATAAAGCTATTTATTTTCCTAATGATGAGTATCTCACAGCTGGTTTAGGGGATACACCCTCATTTTCATGGAGGAGCATTGTGGAAGCTAGGCAGGTGTTAGTACAGGGTCTCAGATGGCAGGTTGGGAATGGTGAGCGTATTGAGATATGGAATCATAATTGGATTCCAGATGTGTACCCCAGAGGGCCATCTTCACCTCCTCCGTATGATGCACCCCGTTTTGTTGAGGAGCTTATTGACCCAATTACTCGGAGTTGGGATGTAAATCTACTTGCCAGGTACTTTACCCAAACTGATATTGATTTGATATTAAGCATTCCATTGACAAGGCATGCACAGAGTGATAGACAAATTTGGCATTTTCACAAGAAGGGTTTCTTTACTACAAATAGTGCATACTTTGTTGCTCGTGATGTGGCTTTGGTGTGGAAGGCAATATGGGATGCTAAAGTACCTAGCAAGGTAGCTTTACATGCATGGAAGACAGCGGTTAATATTCTTCCTACACGAGTGGGATTGAGTACTAAAGGCTATAATGGAGAGATGGGGTGTTTATTGTGTCCTCATACTTTGGAAAACAGTTTGCATGTTTTTGTTGATTGTCCATATGCACAGGAAGTTTGGCATAGAGTTGGGTTACAGCTGCCTACTGGGCCGAGCGACAATTTTATAGATTGGTTTTTGGGTGCAATCAATAGTTTGACAAAGGAGCAGGTAGCTAGGTGTTTGATGCTCTTGTGGGGGATTTGGAAAAACAGGAACAACCAATTATGGGAACATAAGAGACAACATGTATCTGAGGCTGTGTTGCTCACTATGGGTTGGTATGAGGAATTCAAAAAAGTAAATGTGCAGCCAACGGAGATTAGGAGACAATCGGTGAAATGGACAAGACCACAAGAGAATTGGGTGAAGGTTAATTGTGATGGTGCATTCCAGCCGGCAACAAGAAAGGGGGGGGGTGCTGGAGTTGTGATCCGAGATGCTAATGGTGATTTTCAAGTTGGTGCTGCTAGACCTCTCCCTTTAGTAACGTCACCTTTCCATGCAGAATTGATGGCGTTAAAGGAAGGGATCAATTTGGCAGTGGCATTACAGAATGAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000287 GO:0001101 GO:0003674 GO:0003824 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006082 GO:0006629 GO:0006720 GO:0006721 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0008299 GO:0008610 GO:0009058 GO:0009507 GO:0009536 GO:0009685 GO:0009686 GO:0009719 GO:0009725 GO:0009739 GO:0009740 GO:0009755 GO:0009905 GO:0009987 GO:0010033 GO:0010476 GO:0010817 GO:0016053 GO:0016101 GO:0016102 GO:0016114 GO:0016853 GO:0016872 GO:0019752 GO:0023052 GO:0032870 GO:0033993 GO:0042221 GO:0042445 GO:0042446 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0046394 GO:0046872 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0065008 GO:0070887 GO:0071229 GO:0071310 GO:0071370 GO:0071396 GO:0071495 GO:0071704 GO:1901576 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

ko00904 ko01100 ko01110 map00904 map01100 map01110

Pfam Domains

Protein Families

Terpene_synth Terpene_synth_C

Protein Analysis

525

Amino Acids

60.12

Weight (kDa)

9.25

Isoelectric Point (pI)

39.54

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-RVT	PF13966	284 - 365	4.3e-15	zinc-binding in reverse transcriptase
RVT_3	PF13456	464 - 522	1.1e-09	Reverse transcriptase-like

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003437)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G02780
fragaria_vesca	FvH4_2g23400 FvH4_2g23400 FvH4_2g23400 FvH4_2g23420 FvH4_2g23440 FvH4_2g23440 FvH4_2g23440
malus_domestica	MD03G1263500.v1.1 MD11G1208700.v1.1 MD11G1284300.v1.1
prunus_persica	Prupe.8G239900_v2.0.a1
pyrus_communis	pycom11g25170
rosa_chinensis	RchiOBHm_Chr6g0290871 RchiOBHm_Chr6g0290941
rosa_laevigata	RLG00000012165
rosa_multiflora	Rmu_sc0001577.1_g000003
rosa_roxburghii	Rroxscaffold_7G00176530 Rroxscaffold_7G00176670
rosa_rugosa	Rorug06G0215400 Rorug06G0215500 Rorug06G0215600 Rorug06G0215700 Rorug06G0215900 Rorug06G0216000 Rorug06G0216000
rosa_samantha	Rh6AG325900 Rh6AG326200 Rh6BG333600 Rh6BG333800 Rh6CG339300 Rh6CG339700 Rh6DG326600 Rh6DG327100
rosa_wichuraiana	Rw6G028340 Rw6G028360

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	553
Acc36I	ACCTGC	4 cut(s)	167, 553, 580, 1174
AciI	CCGC	3 cut(s)	171, 430, 959
AclWI	GGATC	2 cut(s)	1441, 1553
AcsI	RAATTY	5 cut(s)	186, 321, 448, 822, 1304
AdeI	CACNNNGTG	1 cut(s)	812
AfaI	GTAC	5 cut(s)	573, 647, 752, 924, 994
AfiI	CCNNNNNNNGG	1 cut(s)	1243
AflIII	ACRYGT	1 cut(s)	1261
AgsI	TTSAA	3 cut(s)	121, 1309, 1472
AjnI	CCWGG	1 cut(s)	746
Alw26I	GTCTC	4 cut(s)	260, 584, 1249, 1336
AlwI	GGATC	2 cut(s)	1441, 1553
AoxI	GGCC	2 cut(s)	656, 1124
ApeKI	GCWGC	4 cut(s)	104, 1114, 1324, 1481
ApoI	RAATTY	5 cut(s)	186, 321, 448, 822, 1304
Asp700I	GAANNNNTTC	1 cut(s)	845
AspS9I	GGNCC	2 cut(s)	656, 1124
AsuHPI	GGTGA	6 cut(s)	614, 657, 1363, 1393, 1475, 1500
AsuNHI	GCTAGC	1 cut(s)	457
BauI	CACGAG	2 cut(s)	879, 978
BbsI	GAAGAC	1 cut(s)	959
BbvI	GCAGC	4 cut(s)	91, 1101, 1336, 1468
BccI	CCATC	5 cut(s)	579, 667, 1009, 1391, 1522
BciT130I	CCWGG	1 cut(s)	748
BciVI	GTATCC	1 cut(s)	514
BcoDI	GTCTC	4 cut(s)	260, 584, 1249, 1336
BfaI	CTAG	6 cut(s)	458, 462, 558, 927, 1191, 1485
BfmI	CTRYAG	1 cut(s)	437
BfuAI	ACCTGC	4 cut(s)	167, 553, 580, 1174
BfuI	GTATCC	1 cut(s)	514
BglI	GCCNNNNNGGC	1 cut(s)	1123
BglII	AGATCT	1 cut(s)	332
BisI	GCNGC	4 cut(s)	105, 1115, 1325, 1482
BlsI	GCNGC	4 cut(s)	106, 1116, 1326, 1483
BmcAI	AGTACT	1 cut(s)	994
Bme1390I	CCNGG	1 cut(s)	748
BmgT120I	GGNCC	2 cut(s)	656, 1124
BmrFI	CCNGG	1 cut(s)	748
BmrI	ACTGGG	1 cut(s)	1131
BmsI	GCATC	5 cut(s)	280, 670, 904, 1191, 1444
BmtI	GCTAGC	1 cut(s)	461
BmuI	ACTGGG	1 cut(s)	1131
BpiI	GAAGAC	1 cut(s)	959
BpmI	CTGGAG	3 cut(s)	172, 349, 1458
BsaBI	GATNNNNATC	3 cut(s)	270, 498, 735
BsaI	GGTCTC	2 cut(s)	260, 584
BsaJI	CCNNGG	2 cut(s)	31, 306
Bsc4I	CCNNNNNNNGG	1 cut(s)	1243
Bse118I	RCCGGY	1 cut(s)	1411
Bse1I	ACTGG	3 cut(s)	155, 332, 1126
Bse3DI	GCAATG	1 cut(s)	452
Bse8I	GATNNNNATC	3 cut(s)	270, 498, 735
BseBI	CCWGG	1 cut(s)	748
BseDI	CCNNGG	2 cut(s)	31, 306
BseGI	GGATG	2 cut(s)	736, 919
BseJI	GATNNNNATC	3 cut(s)	270, 498, 735
BseLI	CCNNNNNNNGG	1 cut(s)	1243
BseMI	GCAATG	1 cut(s)	452
BseMII	CTCAG	2 cut(s)	595, 1260
BseNI	ACTGG	3 cut(s)	155, 332, 1126
BseRI	GAGGAG	4 cut(s)	323, 556, 660, 713
BseXI	GCAGC	4 cut(s)	91, 1101, 1336, 1468
BsgI	GTGCAG	3 cut(s)	90, 195, 1343
BshFI	GGCC	2 cut(s)	658, 1126
BsiSI	CCGG	1 cut(s)	1412
BslI	CCNNNNNNNGG	1 cut(s)	1243
BsmAI	GTCTC	4 cut(s)	260, 584, 1249, 1336
BsmI	GAATGC	2 cut(s)	786, 1403
BsnI	GGCC	2 cut(s)	658, 1126
Bso31I	GGTCTC	2 cut(s)	260, 584
Bsp143I	GATC	4 cut(s)	92, 332, 1446, 1545
BspACI	CCGC	3 cut(s)	171, 430, 959
BspANI	GGCC	2 cut(s)	658, 1126
BspCNI	CTCAG	2 cut(s)	594, 1261
BspMI	ACCTGC	4 cut(s)	167, 553, 580, 1174
BspOI	GCTAGC	1 cut(s)	461
BspPI	GGATC	2 cut(s)	1441, 1553
BspTNI	GGTCTC	2 cut(s)	260, 584
BsrDI	GCAATG	1 cut(s)	452
BsrFI	RCCGGY	1 cut(s)	1411
BsrI	ACTGG	3 cut(s)	155, 332, 1126
BssAI	RCCGGY	1 cut(s)	1411
BssECI	CCNNGG	2 cut(s)	31, 306
BssMI	GATC	4 cut(s)	92, 332, 1446, 1545
BssSI	CACGAG	2 cut(s)	879, 978
BssT1I	CCWWGG	1 cut(s)	31
Bst2BI	CACGAG	2 cut(s)	879, 978
Bst2UI	CCWGG	1 cut(s)	748
Bst4CI	ACNGT	3 cut(s)	214, 345, 1052
BstC8I	GCNNGC	4 cut(s)	74, 459, 804, 1413
BstDEI	CTNAG	3 cut(s)	357, 581, 1269
BstF5I	GGATG	2 cut(s)	736, 919
BstKTI	GATC	4 cut(s)	95, 335, 1449, 1548
BstMAI	GTCTC	4 cut(s)	260, 584, 1249, 1336
BstMBI	GATC	4 cut(s)	92, 332, 1446, 1545
BstMWI	GCNNNNNNNGC	4 cut(s)	110, 413, 944, 1123
BstNI	CCWGG	1 cut(s)	748
BstNSI	RCATGY	4 cut(s)	806, 947, 1061, 1265
BstSCI	CCNGG	1 cut(s)	746
BstSFI	CTRYAG	1 cut(s)	437
BstV1I	GCAGC	4 cut(s)	91, 1101, 1336, 1468
BstV2I	GAAGAC	1 cut(s)	959
BstX2I	RGATCY	1 cut(s)	332
BstYI	RGATCY	1 cut(s)	332
BsuI	GTATCC	1 cut(s)	514
BsuRI	GGCC	2 cut(s)	658, 1126
BtsCI	GGATG	2 cut(s)	736, 919
BtsI	GCAGTG	1 cut(s)	1563
BtsIMutI	CAGTG	2 cut(s)	325, 1563
BveI	ACCTGC	4 cut(s)	167, 553, 580, 1174
Cac8I	GCNNGC	4 cut(s)	74, 459, 804, 1413
Cfr10I	RCCGGY	1 cut(s)	1411
Cfr13I	GGNCC	2 cut(s)	656, 1124
Csp6I	GTAC	5 cut(s)	572, 646, 751, 923, 993
CviAII	CATG	9 cut(s)	56, 83, 537, 803, 944, 948, 1058, 1262, 1517
CviQI	GTAC	5 cut(s)	572, 646, 751, 923, 993
DdeI	CTNAG	3 cut(s)	357, 581, 1269
DpnI	GATC	4 cut(s)	94, 334, 1448, 1547
DpnII	GATC	4 cut(s)	92, 332, 1446, 1545
DraIII	CACNNNGTG	1 cut(s)	812
Eco130I	CCWWGG	1 cut(s)	31
Eco31I	GGTCTC	2 cut(s)	260, 584
Eco32I	GATATC	1 cut(s)	28
EcoRI	GAATTC	1 cut(s)	1304
EcoRII	CCWGG	1 cut(s)	746
EcoRV	GATATC	1 cut(s)	28
EcoT14I	CCWWGG	1 cut(s)	31
EcoT22I	ATGCAT	2 cut(s)	273, 949
ErhI	CCWWGG	1 cut(s)	31
FaeI	CATG	9 cut(s)	59, 86, 540, 806, 947, 951, 1061, 1265, 1520
FalI	AAGNNNNNCTT	4 cut(s)	114, 146, 833, 865
FatI	CATG	9 cut(s)	55, 82, 536, 802, 943, 947, 1057, 1261, 1516
FauNDI	CATATG	1 cut(s)	1078
Fnu4HI	GCNGC	4 cut(s)	105, 1115, 1325, 1482
FokI	GGATG	2 cut(s)	743, 926
Fsp4HI	GCNGC	4 cut(s)	105, 1115, 1325, 1482
FspBI	CTAG	6 cut(s)	458, 462, 558, 927, 1191, 1485
GluI	GCNGC	4 cut(s)	105, 1115, 1325, 1482
GsuI	CTGGAG	3 cut(s)	172, 349, 1458
HaeIII	GGCC	2 cut(s)	658, 1126
HapII	CCGG	1 cut(s)	1412
Hin1II	CATG	9 cut(s)	59, 86, 540, 806, 947, 951, 1061, 1265, 1520
HincII	GTYRAC	1 cut(s)	148
HindII	GTYRAC	1 cut(s)	148
HinfI	GANTC	4 cut(s)	302, 442, 622, 634
HpaII	CCGG	1 cut(s)	1412
HphI	GGTGA	6 cut(s)	614, 657, 1363, 1393, 1475, 1500
Hpy166II	GTNNAC	2 cut(s)	148, 646
Hpy188I	TCNGA	5 cut(s)	307, 584, 723, 1270, 1451
Hpy188III	TCNNGA	2 cut(s)	638, 881
Hpy8I	GTNNAC	2 cut(s)	148, 646
HpyAV	CCTTC	5 cut(s)	355, 835, 895, 1378, 1535
HpyCH4III	ACNGT	3 cut(s)	214, 345, 1052
HpyCH4IV	ACGT	1 cut(s)	1505
HpyF10VI	GCNNNNNNNGC	4 cut(s)	110, 413, 944, 1123
HpyF3I	CTNAG	3 cut(s)	357, 581, 1269
HpySE526I	ACGT	1 cut(s)	1505
Hsp92II	CATG	9 cut(s)	59, 86, 540, 806, 947, 951, 1061, 1265, 1520
KroI	GCCGGC	1 cut(s)	1411
KroNI	GCCGGC	1 cut(s)	1413
Kzo9I	GATC	4 cut(s)	92, 332, 1446, 1545
LmnI	GCTCC	4 cut(s)	249, 543, 700, 1180
Lsp1109I	GCAGC	4 cut(s)	91, 1101, 1336, 1468
LweI	GCATC	5 cut(s)	280, 670, 904, 1191, 1444
MaeI	CTAG	6 cut(s)	458, 462, 558, 927, 1191, 1485
MaeII	ACGT	1 cut(s)	1505
MaeIII	GTNAC	4 cut(s)	202, 1107, 1501, 1506
MalI	GATC	4 cut(s)	94, 334, 1448, 1547
MboI	GATC	4 cut(s)	92, 332, 1446, 1545
MboII	GAAGA	4 cut(s)	102, 654, 962, 964
MfeI	CAATTG	1 cut(s)	11
MflI	RGATCY	1 cut(s)	332
MmeI	TCCRAC	1 cut(s)	67
Mph1103I	ATGCAT	2 cut(s)	273, 949
MroNI	GCCGGC	1 cut(s)	1411
MroXI	GAANNNNTTC	1 cut(s)	845
MseI	TTAA	9 cut(s)	167, 191, 195, 381, 399, 782, 963, 1389, 1535
MslI	CAYNNNNRTG	1 cut(s)	535
MspA1I	CMGCKG	4 cut(s)	104, 509, 959, 1114
MspI	CCGG	1 cut(s)	1412
MspR9I	CCNGG	1 cut(s)	748
MunI	CAATTG	1 cut(s)	11
Mva1269I	GAATGC	2 cut(s)	786, 1403
MvaI	CCWGG	1 cut(s)	748
MwoI	GCNNNNNNNGC	4 cut(s)	110, 413, 944, 1123
NaeI	GCCGGC	1 cut(s)	1413
NdeI	CATATG	1 cut(s)	1078
NdeII	GATC	4 cut(s)	92, 332, 1446, 1545
NgoMIV	GCCGGC	1 cut(s)	1411
NheI	GCTAGC	1 cut(s)	457
NlaIII	CATG	9 cut(s)	59, 86, 540, 806, 947, 951, 1061, 1265, 1520
NmeAIII	GCCGAG	1 cut(s)	1152
NmuCI	GTSAC	1 cut(s)	1506
NsiI	ATGCAT	2 cut(s)	273, 949
NspI	RCATGY	4 cut(s)	806, 947, 1061, 1265
PacI	TTAATTAA	1 cut(s)	195
PaeI	GCATGC	1 cut(s)	806
PaqCI	CACCTGC	1 cut(s)	553
PciI	ACATGT	1 cut(s)	1261
PctI	GAATGC	2 cut(s)	786, 1403
PdiI	GCCGGC	1 cut(s)	1413
PdmI	GAANNNNTTC	1 cut(s)	845
PfeI	GAWTC	4 cut(s)	302, 442, 622, 634
PkrI	GCNGC	4 cut(s)	106, 1116, 1326, 1483
PscI	ACATGT	1 cut(s)	1261
Psp6I	CCWGG	1 cut(s)	746
PspGI	CCWGG	1 cut(s)	746
PspPI	GGNCC	2 cut(s)	656, 1124
PsuI	RGATCY	1 cut(s)	332
PvuII	CAGCTG	3 cut(s)	104, 509, 1114
RsaI	GTAC	5 cut(s)	573, 647, 752, 924, 994
RsaNI	GTAC	5 cut(s)	572, 646, 751, 923, 993
RseI	CAYNNNNRTG	1 cut(s)	535
SaqAI	TTAA	9 cut(s)	167, 191, 195, 381, 399, 782, 963, 1389, 1535
SatI	GCNGC	4 cut(s)	105, 1115, 1325, 1482
Sau3AI	GATC	4 cut(s)	92, 332, 1446, 1545
Sau96I	GGNCC	2 cut(s)	656, 1124
ScaI	AGTACT	1 cut(s)	994
ScrFI	CCNGG	1 cut(s)	748
SfaNI	GCATC	5 cut(s)	280, 670, 904, 1191, 1444
SfcI	CTRYAG	1 cut(s)	437
SmiMI	CAYNNNNRTG	1 cut(s)	535
SphI	GCATGC	1 cut(s)	806
SsiI	CCGC	3 cut(s)	171, 430, 959
SspI	AATATT	1 cut(s)	967
SspMI	CTAG	6 cut(s)	458, 462, 558, 927, 1191, 1485
StyD4I	CCNGG	1 cut(s)	746
StyI	CCWWGG	1 cut(s)	31
TaaI	ACNGT	3 cut(s)	214, 345, 1052
TaiI	ACGT	1 cut(s)	1508
TatI	WGTACW	2 cut(s)	571, 992
TfiI	GAWTC	4 cut(s)	302, 442, 622, 634
Tru1I	TTAA	9 cut(s)	167, 191, 195, 381, 399, 782, 963, 1389, 1535
Tru9I	TTAA	9 cut(s)	167, 191, 195, 381, 399, 782, 963, 1389, 1535
TscAI	CASTG	2 cut(s)	332, 1563
TseFI	GTSAC	1 cut(s)	1506
TseI	GCWGC	4 cut(s)	104, 1114, 1324, 1481
Tsp45I	GTSAC	1 cut(s)	1506
TspDTI	ATGAA	3 cut(s)	245, 441, 525
TspGWI	ACGGA	2 cut(s)	663, 1346
TspRI	CASTG	2 cut(s)	332, 1563
XapI	RAATTY	5 cut(s)	186, 321, 448, 822, 1304
XceI	RCATGY	4 cut(s)	806, 947, 1061, 1265
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1374
XmnI	GAANNNNTTC	1 cut(s)	845
XspI	CTAG	6 cut(s)	458, 462, 558, 927, 1191, 1485
ZrmI	AGTACT	1 cut(s)	994
Zsp2I	ATGCAT	2 cut(s)	273, 949

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.