Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0003437

Physical Location & Seq

Genomic Coordinates Reverse (-)

34402447 .. 34402982

Gene Structure 536 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0215500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 441 bp

ATGTTTGGGTTAAATTGCGAGCTTGTTTTTAGCATATCAGCAGTAGACCATTTTTATGCTAACTTTAGTTCACCCCTGCACTGCTTCAAAGCTCAGATTGTTTCTCTCTGGTTGGTCTCTGTGCACAGCTTGGTGTTTTGGCCTTGGCTTTTTGACCCGGGTGGAGGAGGCCTAGTGGATTCCGGCGGCGCTGCTGGTGGCCGAGATGCGGGTGGTGGTAAGGTTGGTGATGGTGATAGCGAGGCTTTGTCTTTCCCCAGGGGTCACGACGAGGTAATGTCTTTCCCCTTGTCCATGGCTTTGGTCCATCTCCTAGGTGCGACCCGGGTGGTGGTGGCCATGCTGTTTTGCCATGGTGTAGTTGATGTGCCGGCGGCTGGTAGCTGTCTGTTTCTAGGATGGCTAGGGTTTGATTCAGGCCTAGGGTTTGTTGGGGTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000287 GO:0001101 GO:0003674 GO:0003824 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006082 GO:0006629 GO:0006720 GO:0006721 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0008299 GO:0008610 GO:0009058 GO:0009507 GO:0009536 GO:0009685 GO:0009686 GO:0009719 GO:0009725 GO:0009739 GO:0009740 GO:0009755 GO:0009905 GO:0009987 GO:0010033 GO:0010476 GO:0010817 GO:0016053 GO:0016101 GO:0016102 GO:0016114 GO:0016853 GO:0016872 GO:0019752 GO:0023052 GO:0032870 GO:0033993 GO:0042221 GO:0042445 GO:0042446 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0046394 GO:0046872 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0065008 GO:0070887 GO:0071229 GO:0071310 GO:0071370 GO:0071396 GO:0071495 GO:0071704 GO:1901576 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

ko00904 ko01100 ko01110 map00904 map01100 map01110

Pfam Domains

Protein Families

Terpene_synth Terpene_synth_C

Protein Analysis

146

Amino Acids

15.22

Weight (kDa)

5.01

Isoelectric Point (pI)

38.79

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003437)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G02780
fragaria_vesca	FvH4_2g23400 FvH4_2g23400 FvH4_2g23400 FvH4_2g23420 FvH4_2g23440 FvH4_2g23440 FvH4_2g23440
malus_domestica	MD03G1263500.v1.1 MD11G1208700.v1.1 MD11G1284300.v1.1
prunus_persica	Prupe.8G239900_v2.0.a1
pyrus_communis	pycom11g25170
rosa_chinensis	RchiOBHm_Chr6g0290871 RchiOBHm_Chr6g0290941
rosa_laevigata	RLG00000012165
rosa_multiflora	Rmu_sc0001577.1_g000003
rosa_roxburghii	Rroxscaffold_7G00176530 Rroxscaffold_7G00176670
rosa_rugosa	Rorug06G0215400 Rorug06G0215500 Rorug06G0215600 Rorug06G0215700 Rorug06G0215900 Rorug06G0216000 Rorug06G0216000
rosa_samantha	Rh6AG325900 Rh6AG326200 Rh6BG333600 Rh6BG333800 Rh6CG339300 Rh6CG339700 Rh6DG326600 Rh6DG327100
rosa_wichuraiana	Rw6G028340 Rw6G028360

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	45
AciI	CCGC	3 cut(s)	186, 209, 374
AcoI	YGGCCR	2 cut(s)	199, 336
AfiI	CCNNNNNNNGG	4 cut(s)	164, 208, 331, 377
AgsI	TTSAA	1 cut(s)	88
AjnI	CCWGG	1 cut(s)	257
AluBI	AGCT	4 cut(s)	22, 92, 129, 384
AluI	AGCT	4 cut(s)	22, 92, 129, 384
Alw21I	GWGCWC	1 cut(s)	126
Alw26I	GTCTC	1 cut(s)	121
Alw44I	GTGCAC	1 cut(s)	122
Ama87I	CYCGRG	2 cut(s)	157, 324
AoxI	GGCC	5 cut(s)	140, 169, 199, 336, 418
ApaLI	GTGCAC	1 cut(s)	122
ApeKI	GCWGC	1 cut(s)	191
AspA2I	CCTAGG	2 cut(s)	313, 421
AspLEI	GCGC	1 cut(s)	191
AspS9I	GGNCC	1 cut(s)	304
AsuC2I	CCSGG	4 cut(s)	158, 159, 325, 326
AsuHPI	GGTGA	3 cut(s)	63, 239, 245
AvaI	CYCGRG	2 cut(s)	157, 324
AvaII	GGWCC	1 cut(s)	304
AvrII	CCTAGG	2 cut(s)	313, 421
BaeGI	GKGCMC	1 cut(s)	126
BalI	TGGCCA	1 cut(s)	338
Bbv12I	GWGCWC	1 cut(s)	126
BbvI	GCAGC	1 cut(s)	178
BccI	CCATC	3 cut(s)	224, 315, 393
BciT130I	CCWGG	1 cut(s)	259
BcnI	CCSGG	4 cut(s)	158, 159, 325, 326
BcoDI	GTCTC	1 cut(s)	121
BfaI	CTAG	5 cut(s)	173, 314, 395, 404, 422
BfoI	RGCGCY	1 cut(s)	192
BisI	GCNGC	3 cut(s)	187, 192, 375
BlnI	CCTAGG	2 cut(s)	313, 421
BlsI	GCNGC	3 cut(s)	188, 193, 376
Bme1390I	CCNGG	5 cut(s)	158, 159, 259, 325, 326
Bme18I	GGWCC	1 cut(s)	304
BmeT110I	CYCGRG	2 cut(s)	157, 324
BmgT120I	GGNCC	1 cut(s)	304
BmrFI	CCNGG	5 cut(s)	158, 159, 259, 325, 326
BmsI	GCATC	1 cut(s)	196
BpuMI	CCSGG	4 cut(s)	158, 159, 325, 326
BsaI	GGTCTC	1 cut(s)	121
BsaJI	CCNNGG	9 cut(s)	143, 157, 257, 258, 294, 313, 324, 352, 421
BsaXI	ACNNNNNCTCC	2 cut(s)	159, 189
Bsc4I	CCNNNNNNNGG	4 cut(s)	164, 208, 331, 377
Bse118I	RCCGGY	1 cut(s)	370
BseBI	CCWGG	1 cut(s)	259
BseDI	CCNNGG	9 cut(s)	143, 157, 257, 258, 294, 313, 324, 352, 421
BseGI	GGATG	1 cut(s)	404
BseLI	CCNNNNNNNGG	4 cut(s)	164, 208, 331, 377
BseMII	CTCAG	1 cut(s)	107
BseRI	GAGGAG	1 cut(s)	180
BseSI	GKGCMC	1 cut(s)	126
BseXI	GCAGC	1 cut(s)	178
BsgI	GTGCAG	1 cut(s)	62
BshFI	GGCC	5 cut(s)	142, 171, 201, 338, 420
BsiHKAI	GWGCWC	1 cut(s)	126
BsiHKCI	CYCGRG	2 cut(s)	157, 324
BsiSI	CCGG	4 cut(s)	158, 183, 325, 371
BslI	CCNNNNNNNGG	4 cut(s)	164, 208, 331, 377
BsmAI	GTCTC	1 cut(s)	121
BsnI	GGCC	5 cut(s)	142, 171, 201, 338, 420
Bso31I	GGTCTC	1 cut(s)	121
BsoBI	CYCGRG	2 cut(s)	157, 324
Bsp1286I	GDGCHC	1 cut(s)	126
Bsp19I	CCATGG	2 cut(s)	294, 352
BspACI	CCGC	3 cut(s)	186, 209, 374
BspANI	GGCC	5 cut(s)	142, 171, 201, 338, 420
BspCNI	CTCAG	1 cut(s)	106
BspTNI	GGTCTC	1 cut(s)	121
BsrFI	RCCGGY	1 cut(s)	370
BssAI	RCCGGY	1 cut(s)	370
BssECI	CCNNGG	9 cut(s)	143, 157, 257, 258, 294, 313, 324, 352, 421
BssT1I	CCWWGG	5 cut(s)	143, 294, 313, 352, 421
Bst2UI	CCWGG	1 cut(s)	259
BstC8I	GCNNGC	2 cut(s)	20, 372
BstDEI	CTNAG	1 cut(s)	93
BstDSI	CCRYGG	2 cut(s)	294, 352
BstF5I	GGATG	1 cut(s)	404
BstH2I	RGCGCY	1 cut(s)	192
BstHHI	GCGC	1 cut(s)	191
BstMAI	GTCTC	1 cut(s)	121
BstNI	CCWGG	1 cut(s)	259
BstSCI	CCNGG	5 cut(s)	156, 157, 257, 323, 324
BstSLI	GKGCMC	1 cut(s)	126
BstV1I	GCAGC	1 cut(s)	178
BstXI	CCANNNNNNTGG	1 cut(s)	301
BsuRI	GGCC	5 cut(s)	142, 171, 201, 338, 420
BtgI	CCRYGG	2 cut(s)	294, 352
BtsCI	GGATG	1 cut(s)	404
BtsI	GCAGTG	1 cut(s)	79
BtsIMutI	CAGTG	1 cut(s)	79
Cac8I	GCNNGC	2 cut(s)	20, 372
CfoI	GCGC	1 cut(s)	191
Cfr10I	RCCGGY	1 cut(s)	370
Cfr13I	GGNCC	1 cut(s)	304
Cfr9I	CCCGGG	2 cut(s)	157, 324
CviAII	CATG	3 cut(s)	295, 340, 353
DdeI	CTNAG	1 cut(s)	93
EaeI	YGGCCR	2 cut(s)	199, 336
Eco130I	CCWWGG	5 cut(s)	143, 294, 313, 352, 421
Eco147I	AGGCCT	2 cut(s)	171, 420
Eco31I	GGTCTC	1 cut(s)	121
Eco47I	GGWCC	1 cut(s)	304
Eco88I	CYCGRG	2 cut(s)	157, 324
EcoRII	CCWGG	1 cut(s)	257
EcoT14I	CCWWGG	5 cut(s)	143, 294, 313, 352, 421
ErhI	CCWWGG	5 cut(s)	143, 294, 313, 352, 421
FaeI	CATG	3 cut(s)	298, 343, 356
FaiI	YATR	5 cut(s)	35, 57, 296, 341, 354
FatI	CATG	3 cut(s)	294, 339, 352
FauI	CCCGC	1 cut(s)	202
FblI	GTMKAC	1 cut(s)	45
Fnu4HI	GCNGC	3 cut(s)	187, 192, 375
FokI	GGATG	1 cut(s)	411
Fsp4HI	GCNGC	3 cut(s)	187, 192, 375
FspBI	CTAG	5 cut(s)	173, 314, 395, 404, 422
GlaI	GCGC	1 cut(s)	190
GluI	GCNGC	3 cut(s)	187, 192, 375
HaeII	RGCGCY	1 cut(s)	192
HaeIII	GGCC	5 cut(s)	142, 171, 201, 338, 420
HapII	CCGG	4 cut(s)	158, 183, 325, 371
HhaI	GCGC	1 cut(s)	191
Hin1II	CATG	3 cut(s)	298, 343, 356
Hin6I	GCGC	1 cut(s)	189
HinP1I	GCGC	1 cut(s)	189
HinfI	GANTC	2 cut(s)	179, 413
HpaII	CCGG	4 cut(s)	158, 183, 325, 371
HphI	GGTGA	3 cut(s)	63, 239, 245
Hpy166II	GTNNAC	3 cut(s)	46, 71, 124
Hpy188I	TCNGA	2 cut(s)	96, 440
Hpy188III	TCNNGA	1 cut(s)	266
Hpy8I	GTNNAC	3 cut(s)	46, 71, 124
Hpy99I	CGWCG	1 cut(s)	272
HpyCH4V	TGCA	2 cut(s)	79, 124
HpyF3I	CTNAG	1 cut(s)	93
Hsp92II	CATG	3 cut(s)	298, 343, 356
HspAI	GCGC	1 cut(s)	189
KroI	GCCGGC	1 cut(s)	370
KroNI	GCCGGC	1 cut(s)	372
Lsp1109I	GCAGC	1 cut(s)	178
LweI	GCATC	1 cut(s)	196
MaeI	CTAG	5 cut(s)	173, 314, 395, 404, 422
MaeIII	GTNAC	1 cut(s)	263
MhlI	GDGCHC	1 cut(s)	126
MlsI	TGGCCA	1 cut(s)	338
MluCI	AATT	1 cut(s)	13
MluNI	TGGCCA	1 cut(s)	338
MnlI	CCTC	4 cut(s)	158, 161, 235, 265
Mox20I	TGGCCA	1 cut(s)	338
MroNI	GCCGGC	1 cut(s)	370
MscI	TGGCCA	1 cut(s)	338
MseI	TTAA	1 cut(s)	11
MslI	CAYNNNNRTG	1 cut(s)	54
Msp20I	TGGCCA	1 cut(s)	338
MspI	CCGG	4 cut(s)	158, 183, 325, 371
MspR9I	CCNGG	5 cut(s)	158, 159, 259, 325, 326
MvaI	CCWGG	1 cut(s)	259
NaeI	GCCGGC	1 cut(s)	372
NciI	CCSGG	4 cut(s)	158, 159, 325, 326
NcoI	CCATGG	2 cut(s)	294, 352
NgoMIV	GCCGGC	1 cut(s)	370
NlaIII	CATG	3 cut(s)	298, 343, 356
NmeAIII	GCCGAG	1 cut(s)	227
NmuCI	GTSAC	1 cut(s)	263
PasI	CCCWGGG	1 cut(s)	258
PceI	AGGCCT	2 cut(s)	171, 420
PdiI	GCCGGC	1 cut(s)	372
PfeI	GAWTC	2 cut(s)	179, 413
PkrI	GCNGC	3 cut(s)	188, 193, 376
Psp6I	CCWGG	1 cut(s)	257
PspGI	CCWGG	1 cut(s)	257
PspPI	GGNCC	1 cut(s)	304
RseI	CAYNNNNRTG	1 cut(s)	54
SaqAI	TTAA	1 cut(s)	11
SatI	GCNGC	3 cut(s)	187, 192, 375
Sau96I	GGNCC	1 cut(s)	304
ScrFI	CCNGG	5 cut(s)	158, 159, 259, 325, 326
SduI	GDGCHC	1 cut(s)	126
SetI	ASST	7 cut(s)	24, 94, 131, 225, 276, 319, 386
SfaNI	GCATC	1 cut(s)	196
SinI	GGWCC	1 cut(s)	304
SmaI	CCCGGG	2 cut(s)	159, 326
SmiMI	CAYNNNNRTG	1 cut(s)	54
Sse9I	AATT	1 cut(s)	13
SseBI	AGGCCT	2 cut(s)	171, 420
SsiI	CCGC	3 cut(s)	186, 209, 374
SspMI	CTAG	5 cut(s)	173, 314, 395, 404, 422
StuI	AGGCCT	2 cut(s)	171, 420
StyD4I	CCNGG	5 cut(s)	156, 157, 257, 323, 324
StyI	CCWWGG	5 cut(s)	143, 294, 313, 352, 421
TasI	AATT	1 cut(s)	13
TauI	GCSGC	2 cut(s)	189, 377
TfiI	GAWTC	2 cut(s)	179, 413
Tru1I	TTAA	1 cut(s)	11
Tru9I	TTAA	1 cut(s)	11
TscAI	CASTG	1 cut(s)	86
TseFI	GTSAC	1 cut(s)	263
TseI	GCWGC	1 cut(s)	191
Tsp45I	GTSAC	1 cut(s)	263
TspMI	CCCGGG	2 cut(s)	157, 324
TspRI	CASTG	1 cut(s)	86
VneI	GTGCAC	1 cut(s)	122
VpaK11BI	GGWCC	1 cut(s)	304
XmaI	CCCGGG	2 cut(s)	157, 324
XmaJI	CCTAGG	2 cut(s)	313, 421
XmiI	GTMKAC	1 cut(s)	45
XspI	CTAG	5 cut(s)	173, 314, 395, 404, 422

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.