Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0003437

Physical Location & Seq

Genomic Coordinates Reverse (-)

34414122 .. 34421236

Gene Structure 7115 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0215600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3387 bp

ATGGCAGATCTTGCTAGCTACGGGAATGCCAACCGTGACATTGACCAGGCAATAATTGCTTTGAAGAAGGGTGCTCAGTTACTGAAATATGGTCGTAAGGGAAAGCCAAAGTTTTGTCCATTTCGACTTTCTAGCGACGAATCATCTTTGATCTGGATTTCAAGTAGTGGAGAAAGAACTTTGAAGTTAGCTTCTGTCTCAAGAATTATTCCTGGGCAAAGAACTGCCGTTTTCCAACGATATCTGCGTCCTGAAAAGGATTATTTATCTTTTTCTCTTATATATAATAACGGAAAGCGTTCCCTTGATCTGATTTGCAAGGATAAAGTCGAGGCAGAAGTGTGGATTGCTGGCCTCAAAGCACTTATATCCTCTGGTAGAGGTGGCCGCTCCAAAATTGATGGATGGAGTGATGGAGGCTTGTACCTTGATGATAGCAGAGACTTGACATCAAATAGCCCTAGTGATAGTTCAGTTAGTGGTACGCGAGATATTGGGTCTCCTGAGATTTCTGTCAGTTTCAAACCAAATACTTCACCAAAGAGTTTTCCGCCTGACAATTCTCCGGTCTCTGAGAGGTCACATGTAGCATCAGACCAGACAAATATGCAAGTAAAAGGATCCGGTTCAGATGCATTTCGAGTTAGTGTTTCAAGTGCTCCCAGCACTTCAAGTCATGGTTCTACACCCGATGATTGTGATGCTCTAGGTGATGTATACATATGGGGTGAGGTCATTTGTGATAGTGTTGTTAAGATTGGAGCTGATAAAAATGTAAATTATTTGAGTCCCCGAGCAGATGTGCTTGTTCCTAGGCCATTAGAGTCCAATGTTGTTTTGGATGTACATCATATAGCCTGTGGGGTCAAGCATGCAGCCTTGGTCACAAGACAAGGTGAAGTTTTTACATGGGGTGAAGAATCTGGGGGACGACTTGGCCATGGTGTGGGGAAGGATGTTGCTCAACCCCGTCTAGTTGAATCTCTGGCAGCTACTAGTGTTGATTTTGCGTCATGTGGAGAATTTCATAGTTGTGCTGTTACAATGGCTGGGGAACTTTATACGTGGGGAGATGGTACACACAATGCTGGGCTTCTTGGTCATGGCACTGATGTCAGTCACTGGATACCAAAGAGAATTTCAGGTCCTCTTGAGGGACTTCAAGTTGCTTCTGTATCTTGTGGTCCATGGCATACAGCCTTGGTGACATCAACGGGGAAACTTTTTACATTTGGCGATGGAACATTTGGTGTCTTAGGCCATGGAGACAGAGAAAATGTTTCATATCCGAGAGAAGTAGATTCCCTAACAGGTTTGAGGACAATTGCTGTTGCATGTGGGGTATGGCACACTGCTGCTGTAGTAGAGGTTATTGCAACACAATCTAGTGCCAGTATTTCATCAGGTAAATTGTTTACTTGGGGTGATGGAGATAAAAATCGTCTTGGACATGGAGACAAGGAAGCCCGGCTTAAACCGACGTGTGTTCCAGCCCTTATTGATTACAATTTTCACAAAATTGCTTGCGGGCACAGTTTAACTGTTGGCTTGACAACATCAGGGCATGTCTTTACAATGGGTAGTACTGTTTATGGTCAGCTCGGAAATCCCAATTCTGATGGAAAAATACCTTGCTTAGTGGATGACAAACTTTCCGGGGAATGTATTGAAGAAATTGCTTGTGGTGCATATCATGTAGCAGTATTAACATCCAGAAATGAAGTTTATACATGGGGAAAAGGTGCTAATGGGAGGTTGGGGCATGGTGATGTTGAGGATCGAAAAACACCGACTATGGTCGAAGGTTTGAAGGATAGACATGTGAAATATATTGGTTGTGGTTCACACTATACAGCAGCTATATGTCTTCACAAATGGGTATCTGGTGCTGAGCAGTCACAGTGCTCTGCATGTAGACAGGCTTTTGGATTTACAAGGAAGAGGCATAATTGCTATAACTGTGGACTTGTGCACTGCCATTCATGTAGTTCCAGAAAAGCAACAAGAGCAGCACTGTCTCCTAATCCTGGAAAACCGTATCGAGTGTGTGATTCTTGTTATGTGAAATTGAACAAGGTGTTAGAACCTGGTAGTAATAATAGAAAGAATGTTATACCTCGCTTGTCTGGTGAGAACAAGGACAGATTGGACAAGGCTGACATAAGATTATACAAGTCTGCTGTACCTTCAAACGTGGATTTGATAAAGCAATTAGATAGCAAAGCAGCCAAGCAAGGAAAGAAAGCTGAGACATTTTCTCTTGTTCGCTCCTCTCAAGCACCTTCGCTGTTGCAATTAAAGGATGTAGTTATGTCAGCTGCTGTTGATCTGAGACGAACAGTTCCCAAACCAGTTCTTACACCATCTGGAGTAAGTTCGAGGTCTGTGTCGCCTTTCTCAAGGAGACCAAGCCCTCCTCGTTTTGCAACTCCTGTTCCTACAACATCTGGACTTTCCTTCTCGAAAAGTATCGCAGATAGTTTGAAGAAAACTAATGAGCTTTTGAATCAGGAAGTGCTAAAATTACGTTCACAGGTTGATAGCCTGAGACAGAGATGTGAACTTCAAGAAGTAGAGCTTCAGAATTCAACAAAGAAAGCTCAAGAAGCTATGACAGTGGCTGCAGAGGAATCTGCGAAATCTAAAGCGGCTAAAGAAGTTATAAAGTCACTAACTGCACAGCTCAAGGATTTGGCTGAAAGGCTGCCACCTGGGGTTTATGATACTGAGAGCATAAAGCAGGCATATCCATCTTATGGTTTGGAGTCAAATGGCATTCACTATCCAGATGGAGATAACCATTCAAGATCAAGTTCAATGAGCAATTCTTACTTAATTTCCTCCATGGGAATCGACTCAACTACAGTAAACGGAAGTCAAGGGCAGACTCATTCACCCAGGGATTCAGTAGGAACGAATGAAACTAACGTGCAACACAATAGGGAGCTGGTGACCTCCAATGGGATGGTAAATGCGCTAGATAGACTGCCCAATGGTGGCGGATCATTTCAGTCAGTTGGTAGTAATCTGTCGGTGGCTGTTGATGGCAAGGACTCTGGGCCTTTCCAAGATGGGGAGAATGGTACGAGATCTAGGAATTCTGCATTGGCTGTTACTGGTAATACAGTTGAGGCAGAATGGATTGAACAATATGAGCCTGGTGTTTACATAACTCTTGTGGCTCTTCGTGATGGAACTAGAGATCTCAAACGAGTGCGCTTCAGCCGGAGAAGATTTGGAGAACACCAAGCAGAGATTTGGTGGTCTGAGAATCGCGAAAAAGTGTACGAGAAGTACAACGTCCGTGGATCGGACAAGTCTTCAGTTTCTGGCTCAGCAGCACGTAGATCGGATGGAGCTCTCTCACCTGCATCCCAACAACCCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000287 GO:0001101 GO:0003674 GO:0003824 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006082 GO:0006629 GO:0006720 GO:0006721 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0008299 GO:0008610 GO:0009058 GO:0009507 GO:0009536 GO:0009685 GO:0009686 GO:0009719 GO:0009725 GO:0009739 GO:0009740 GO:0009755 GO:0009905 GO:0009987 GO:0010033 GO:0010476 GO:0010817 GO:0016053 GO:0016101 GO:0016102 GO:0016114 GO:0016853 GO:0016872 GO:0019752 GO:0023052 GO:0032870 GO:0033993 GO:0042221 GO:0042445 GO:0042446 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0046394 GO:0046872 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0065008 GO:0070887 GO:0071229 GO:0071310 GO:0071370 GO:0071396 GO:0071495 GO:0071704 GO:1901576 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

ko00904 ko01100 ko01110 map00904 map01100 map01110

Pfam Domains

Protein Families

Terpene_synth Terpene_synth_C

Protein Analysis

1128

Amino Acids

121.61

Weight (kDa)

8.75

Isoelectric Point (pI)

39.99

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PH_12	PF16457	16 - 123	1.9e-08	Pleckstrin homology domain
WD40_RLD	PF25390	239 - 620	7e-77	RCC1-like domain
RCC1	PF00415	298 - 347	1e-09	Regulator of chromosome condensation (RCC1) repeat
RCC1	PF00415	351 - 402	5.3e-10	Regulator of chromosome condensation (RCC1) repeat
RCC1_2	PF13540	389 - 417	1.6e-06	Regulator of chromosome condensation (RCC1) repeat
RCC1	PF00415	406 - 454	1.4e-13	Regulator of chromosome condensation (RCC1) repeat
RCC1	PF00415	468 - 516	8.3e-12	Regulator of chromosome condensation (RCC1) repeat
RCC1	PF00415	520 - 569	6.2e-08	Regulator of chromosome condensation (RCC1) repeat
RCC1_2	PF13540	557 - 584	5.5e-07	Regulator of chromosome condensation (RCC1) repeat
RCC1	PF00415	574 - 621	8.6e-14	Regulator of chromosome condensation (RCC1) repeat
FYVE	PF01363	625 - 691	4.8e-15	FYVE zinc finger
BRX_N	PF13713	876 - 910	4.4e-18	Transcription factor BRX N-terminal domain
BRX	PF08381	1044 - 1099	7.8e-29	Transcription factor regulating root and shoot growth via Pin3

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003437)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G02780
fragaria_vesca	FvH4_2g23400 FvH4_2g23400 FvH4_2g23400 FvH4_2g23420 FvH4_2g23440 FvH4_2g23440 FvH4_2g23440
malus_domestica	MD03G1263500.v1.1 MD11G1208700.v1.1 MD11G1284300.v1.1
prunus_persica	Prupe.8G239900_v2.0.a1
pyrus_communis	pycom11g25170
rosa_chinensis	RchiOBHm_Chr6g0290871 RchiOBHm_Chr6g0290941
rosa_laevigata	RLG00000012165
rosa_multiflora	Rmu_sc0001577.1_g000003
rosa_roxburghii	Rroxscaffold_7G00176530 Rroxscaffold_7G00176670
rosa_rugosa	Rorug06G0215400 Rorug06G0215500 Rorug06G0215600 Rorug06G0215700 Rorug06G0215900 Rorug06G0216000 Rorug06G0216000
rosa_samantha	Rh6AG325900 Rh6AG326200 Rh6BG333600 Rh6BG333800 Rh6CG339300 Rh6CG339700 Rh6DG326600 Rh6DG327100
rosa_wichuraiana	Rw6G028340 Rw6G028360

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	2663
AarI	CACCTGC	1 cut(s)	3376
Acc36I	ACCTGC	1 cut(s)	3376
AccB7I	CCANNNNNTGG	2 cut(s)	946, 2756
AccBSI	CCGCTC	1 cut(s)	390
AccI	GTMKAC	2 cut(s)	717, 1915
AccII	CGCG	2 cut(s)	487, 3276
AciI	CCGC	5 cut(s)	388, 551, 1527, 2648, 3000
AclWI	GGATC	5 cut(s)	615, 628, 1785, 3010, 3316
AcoI	YGGCCR	2 cut(s)	385, 937
AcsI	RAATTY	4 cut(s)	1022, 1137, 2584, 3097
AcuI	CTGAAG	3 cut(s)	2564, 3205, 3306
AfaI	GTAC	9 cut(s)	425, 484, 846, 1078, 1585, 2184, 3085, 3287, 3296
AfiI	CCNNNNNNNGG	8 cut(s)	946, 1154, 2027, 2756, 2961, 2996, 3073, 3310
AflIII	ACRYGT	3 cut(s)	583, 1481, 1819
AhlI	ACTAGT	1 cut(s)	995
AjiI	CACGTC	1 cut(s)	1482
AjnI	CCWGG	7 cut(s)	45, 211, 2026, 2086, 2710, 2897, 3157
AjuI	GAANNNNNNNTTGG	4 cut(s)	1123, 1155, 3089, 3121
Alw21I	GWGCWC	5 cut(s)	76, 661, 1907, 1974, 3361
Alw44I	GTGCAC	1 cut(s)	1970
AlwI	GGATC	5 cut(s)	615, 628, 1785, 3010, 3316
AlwNI	CAGNNNCTG	5 cut(s)	82, 1122, 2321, 2621, 3329
Ama87I	CYCGRG	1 cut(s)	792
AoxI	GGCC	6 cut(s)	352, 385, 815, 937, 1258, 3059
ApaLI	GTGCAC	1 cut(s)	1970
ApoI	RAATTY	4 cut(s)	1022, 1137, 2584, 3097
Asp700I	GAANNNNTTC	1 cut(s)	298
AspA2I	CCTAGG	1 cut(s)	812
AspLEI	GCGC	2 cut(s)	2977, 3219
AspS9I	GGNCC	3 cut(s)	1145, 1184, 3059
AsuC2I	CCSGG	2 cut(s)	1468, 1657
AsuNHI	GCTAGC	1 cut(s)	14
AvaI	CYCGRG	1 cut(s)	792
AvaII	GGWCC	2 cut(s)	1145, 1184
AvrII	CCTAGG	1 cut(s)	812
BaeGI	GKGCMC	2 cut(s)	1533, 1974
BalI	TGGCCA	1 cut(s)	939
BamHI	GGATCC	1 cut(s)	620
BanII	GRGCYC	1 cut(s)	3361
BbsI	GAAGAC	2 cut(s)	1859, 3312
Bbv12I	GWGCWC	5 cut(s)	76, 661, 1907, 1974, 3361
BceAI	ACGGC	1 cut(s)	212
BcgI	CGANNNNNNTGC	2 cut(s)	3330, 3364
BciT130I	CCWGG	7 cut(s)	47, 213, 2028, 2088, 2712, 2899, 3159
BciVI	GTATCC	1 cut(s)	1119
BcnI	CCSGG	2 cut(s)	1468, 1657
BcuI	ACTAGT	1 cut(s)	995
BfmI	CTRYAG	3 cut(s)	1359, 2622, 2862
BfuAI	ACCTGC	1 cut(s)	3376
BfuI	GTATCC	1 cut(s)	1119
BglII	AGATCT	3 cut(s)	7, 3089, 3202
BlnI	CCTAGG	1 cut(s)	812
BlpI	GCTNAGC	2 cut(s)	1890, 3334
BmcAI	AGTACT	1 cut(s)	1585
Bme1390I	CCNGG	9 cut(s)	47, 213, 1468, 1657, 2028, 2088, 2712, 2899, 3159
Bme18I	GGWCC	2 cut(s)	1145, 1184
BmeT110I	CYCGRG	1 cut(s)	792
BmgBI	CACGTC	1 cut(s)	1482
BmgT120I	GGNCC	3 cut(s)	1145, 1184, 3059
BmiI	GGNNCC	1 cut(s)	622
BmrFI	CCNGG	9 cut(s)	47, 213, 1468, 1657, 2028, 2088, 2712, 2899, 3159
BmsI	GCATC	4 cut(s)	599, 622, 691, 3380
BmtI	GCTAGC	1 cut(s)	18
BoxI	GACNNNNGTC	1 cut(s)	1796
BpiI	GAAGAC	2 cut(s)	1859, 3312
BpmI	CTGGAG	1 cut(s)	2388
Bpu1102I	GCTNAGC	2 cut(s)	1890, 3334
BpuEI	CTTGAG	6 cut(s)	184, 1172, 2259, 2383, 2586, 2669
BpuMI	CCSGG	2 cut(s)	1468, 1657
BsaAI	YACGTR	2 cut(s)	1065, 3344
BsaBI	GATNNNNATC	2 cut(s)	846, 1437
BsaI	GGTCTC	3 cut(s)	504, 574, 2398
BsaWI	WCCGGW	2 cut(s)	565, 623
Bsc4I	CCNNNNNNNGG	8 cut(s)	946, 1154, 2027, 2756, 2961, 2996, 3073, 3310
Bse1I	ACTGG	4 cut(s)	1127, 1392, 2351, 3121
Bse8I	GATNNNNATC	2 cut(s)	846, 1437
BseBI	CCWGG	7 cut(s)	47, 213, 2028, 2088, 2712, 2899, 3159
BseGI	GGATG	9 cut(s)	410, 847, 961, 1648, 1709, 2308, 2970, 3358, 3371
BseJI	GATNNNNATC	2 cut(s)	846, 1437
BseLI	CCNNNNNNNGG	8 cut(s)	946, 1154, 2027, 2756, 2961, 2996, 3073, 3310
BseNI	ACTGG	4 cut(s)	1127, 1392, 2351, 3121
BseRI	GAGGAG	2 cut(s)	2260, 2406
BseSI	GKGCMC	2 cut(s)	1533, 1974
BseYI	CCCAGC	3 cut(s)	662, 1049, 1088
BsgI	GTGCAG	1 cut(s)	2661
Bsh1236I	CGCG	2 cut(s)	487, 3276
BshFI	GGCC	6 cut(s)	354, 387, 817, 939, 1260, 3061
BsiHKAI	GWGCWC	5 cut(s)	76, 661, 1907, 1974, 3361
BsiHKCI	CYCGRG	1 cut(s)	792
BsiSI	CCGG	5 cut(s)	566, 624, 1468, 1656, 3226
BslFI	GGGAC	3 cut(s)	774, 942, 1170
BslI	CCNNNNNNNGG	8 cut(s)	946, 1154, 2027, 2756, 2961, 2996, 3073, 3310
BsmBI	CGTCTC	1 cut(s)	2326
BsmFI	GGGAC	3 cut(s)	774, 942, 1170
BsmI	GAATGC	2 cut(s)	31, 2775
BsnI	GGCC	6 cut(s)	354, 387, 817, 939, 1260, 3061
Bso31I	GGTCTC	3 cut(s)	504, 574, 2398
BsoBI	CYCGRG	1 cut(s)	792
Bsp1286I	GDGCHC	6 cut(s)	76, 661, 1533, 1907, 1974, 3361
Bsp1407I	TGTACA	1 cut(s)	844
Bsp1720I	GCTNAGC	2 cut(s)	1890, 3334
Bsp19I	CCATGG	4 cut(s)	940, 1187, 1261, 2844
Bsp68I	TCGCGA	1 cut(s)	3276
BspACI	CCGC	5 cut(s)	388, 551, 1527, 2648, 3000
BspANI	GGCC	6 cut(s)	354, 387, 817, 939, 1260, 3061
BspFNI	CGCG	2 cut(s)	487, 3276
BspLI	GGNNCC	1 cut(s)	622
BspMAI	CTGCAG	1 cut(s)	2626
BspMI	ACCTGC	1 cut(s)	3376
BspOI	GCTAGC	1 cut(s)	18
BspPI	GGATC	5 cut(s)	615, 628, 1785, 3010, 3316
BspQI	GCTCTTC	1 cut(s)	3189
BspTNI	GGTCTC	3 cut(s)	504, 574, 2398
BsrBI	CCGCTC	1 cut(s)	390
BsrGI	TGTACA	1 cut(s)	844
BsrI	ACTGG	4 cut(s)	1127, 1392, 2351, 3121
BssNAI	GTATAC	1 cut(s)	718
BssT1I	CCWWGG	7 cut(s)	812, 879, 940, 1187, 1200, 1261, 2844
Bst1107I	GTATAC	1 cut(s)	718
Bst2UI	CCWGG	7 cut(s)	47, 213, 2028, 2088, 2712, 2899, 3159
Bst6I	CTCTTC	2 cut(s)	1934, 3189
BstAPI	GCANNNNNTGC	2 cut(s)	11, 56
BstAUI	TGTACA	1 cut(s)	844
BstBAI	YACGTR	2 cut(s)	1065, 3344
BstC8I	GCNNGC	6 cut(s)	16, 352, 873, 1525, 1529, 2742
BstDSI	CCRYGG	5 cut(s)	940, 1187, 1261, 2844, 3304
BstEII	GGTNACC	1 cut(s)	2950
BstF5I	GGATG	9 cut(s)	410, 847, 961, 1648, 1709, 2308, 2970, 3358, 3371
BstFNI	CGCG	2 cut(s)	487, 3276
BstHHI	GCGC	2 cut(s)	2977, 3219
BstMWI	GCNNNNNNNGC	5 cut(s)	11, 56, 1685, 2006, 2606
BstNI	CCWGG	7 cut(s)	47, 213, 2028, 2088, 2712, 2899, 3159
BstNSI	RCATGY	6 cut(s)	587, 875, 1338, 1568, 1823, 1914
BstPAI	GACNNNNGTC	1 cut(s)	1796
BstPI	GGTNACC	1 cut(s)	2950
BstSCI	CCNGG	9 cut(s)	45, 211, 1466, 1655, 2026, 2086, 2710, 2897, 3157
BstSFI	CTRYAG	3 cut(s)	1359, 2622, 2862
BstSLI	GKGCMC	2 cut(s)	1533, 1974
BstUI	CGCG	2 cut(s)	487, 3276
BstV2I	GAAGAC	2 cut(s)	1859, 3312
BstX2I	RGATCY	4 cut(s)	7, 620, 3089, 3202
BstXI	CCANNNNNNTGG	1 cut(s)	2965
BstYI	RGATCY	4 cut(s)	7, 620, 3089, 3202
BstZ17I	GTATAC	1 cut(s)	718
BsuI	GTATCC	1 cut(s)	1119
BsuRI	GGCC	6 cut(s)	354, 387, 817, 939, 1260, 3061
BtgI	CCRYGG	5 cut(s)	940, 1187, 1261, 2844, 3304
BtgZI	GCGATG	1 cut(s)	1251
BtrI	CACGTC	1 cut(s)	1482
BtsCI	GGATG	9 cut(s)	410, 847, 961, 1648, 1709, 2308, 2970, 3358, 3371
BtsI	GCAGTG	2 cut(s)	1350, 1972
BtsIMutI	CAGTG	7 cut(s)	1107, 1120, 1350, 1907, 1972, 2012, 2622
BtuMI	TCGCGA	1 cut(s)	3276
BveI	ACCTGC	1 cut(s)	3376
Cac8I	GCNNGC	6 cut(s)	16, 352, 873, 1525, 1529, 2742
CaiI	CAGNNNCTG	5 cut(s)	82, 1122, 2321, 2621, 3329
CfoI	GCGC	2 cut(s)	2977, 3219
Cfr13I	GGNCC	3 cut(s)	1145, 1184, 3059
CseI	GACGC	2 cut(s)	236, 999
CsiI	ACCWGGT	1 cut(s)	2086
Csp6I	GTAC	9 cut(s)	424, 483, 845, 1077, 1584, 2183, 3084, 3286, 3295
CspCI	CAANNNNNGTGG	2 cut(s)	3286, 3321
CviQI	GTAC	9 cut(s)	424, 483, 845, 1077, 1584, 2183, 3084, 3286, 3295
EaeI	YGGCCR	2 cut(s)	385, 937
Eam1104I	CTCTTC	2 cut(s)	1934, 3189
EarI	CTCTTC	2 cut(s)	1934, 3189
EciI	GGCGGA	2 cut(s)	540, 3015
Ecl136II	GAGCTC	1 cut(s)	3359
Eco130I	CCWWGG	7 cut(s)	812, 879, 940, 1187, 1200, 1261, 2844
Eco24I	GRGCYC	1 cut(s)	3361
Eco31I	GGTCTC	3 cut(s)	504, 574, 2398
Eco32I	GATATC	1 cut(s)	242
Eco47I	GGWCC	2 cut(s)	1145, 1184
Eco53kI	GAGCTC	1 cut(s)	3359
Eco57I	CTGAAG	3 cut(s)	2564, 3205, 3306
Eco88I	CYCGRG	1 cut(s)	792
Eco91I	GGTNACC	1 cut(s)	2950
EcoICRI	GAGCTC	1 cut(s)	3359
EcoO109I	RGGNCCY	1 cut(s)	1145
EcoO65I	GGTNACC	1 cut(s)	2950
EcoRI	GAATTC	2 cut(s)	2584, 3097
EcoRII	CCWGG	7 cut(s)	45, 211, 2026, 2086, 2710, 2897, 3157
EcoRV	GATATC	1 cut(s)	242
EcoT14I	CCWWGG	7 cut(s)	812, 879, 940, 1187, 1200, 1261, 2844
EcoT22I	ATGCAT	1 cut(s)	637
EcoT38I	GRGCYC	1 cut(s)	3361
ErhI	CCWWGG	7 cut(s)	812, 879, 940, 1187, 1200, 1261, 2844
Esp3I	CGTCTC	1 cut(s)	2326
FalI	AAGNNNNNCTT	4 cut(s)	1455, 1487, 2562, 2594
FaqI	GGGAC	3 cut(s)	774, 942, 1170
FauI	CCCGC	1 cut(s)	1520
FauNDI	CATATG	1 cut(s)	722
FblI	GTMKAC	2 cut(s)	717, 1915
FokI	GGATG	9 cut(s)	417, 854, 968, 1655, 1696, 2315, 2977, 3358, 3365
FriOI	GRGCYC	1 cut(s)	3361
GlaI	GCGC	2 cut(s)	2976, 3218
GsaI	CCCAGC	3 cut(s)	666, 1053, 1092
GsuI	CTGGAG	1 cut(s)	2388
HaeIII	GGCC	6 cut(s)	354, 387, 817, 939, 1260, 3061
HapII	CCGG	5 cut(s)	566, 624, 1468, 1656, 3226
HgaI	GACGC	2 cut(s)	236, 999
HhaI	GCGC	2 cut(s)	2977, 3219
Hin6I	GCGC	2 cut(s)	2975, 3217
HinP1I	GCGC	2 cut(s)	2975, 3217
HpaII	CCGG	5 cut(s)	566, 624, 1468, 1656, 3226
Hpy99I	CGWCG	2 cut(s)	140, 1483
HpyAV	CCTTC	7 cut(s)	61, 946, 1796, 1804, 2196, 2292, 2467
HpyCH4IV	ACGT	7 cut(s)	1064, 1481, 2193, 2527, 2928, 3300, 3343
HpyF10VI	GCNNNNNNNGC	5 cut(s)	11, 56, 1685, 2006, 2606
HpySE526I	ACGT	7 cut(s)	1064, 1481, 2193, 2527, 2928, 3300, 3343
HspAI	GCGC	2 cut(s)	2975, 3217
LguI	GCTCTTC	1 cut(s)	3189
LmnI	GCTCC	6 cut(s)	395, 664, 761, 2273, 2944, 3356
LweI	GCATC	4 cut(s)	599, 622, 691, 3380
MabI	ACCWGGT	1 cut(s)	2086
MaeII	ACGT	7 cut(s)	1064, 1481, 2193, 2527, 2928, 3300, 3343
MbiI	CCGCTC	1 cut(s)	390
MboII	GAAGA	9 cut(s)	76, 929, 1682, 1859, 1951, 2497, 3176, 3243, 3312
MfeI	CAATTG	1 cut(s)	1323
MflI	RGATCY	4 cut(s)	7, 620, 3089, 3202
MhlI	GDGCHC	6 cut(s)	76, 661, 1533, 1907, 1974, 3361
MlsI	TGGCCA	1 cut(s)	939
MluNI	TGGCCA	1 cut(s)	939
MlyI	GAGTC	6 cut(s)	796, 833, 2774, 2849, 2881, 3047
MmeI	TCCRAC	1 cut(s)	259
Mox20I	TGGCCA	1 cut(s)	939
Mph1103I	ATGCAT	1 cut(s)	637
MroXI	GAANNNNTTC	1 cut(s)	298
MscI	TGGCCA	1 cut(s)	939
MseI	TTAA	6 cut(s)	753, 1473, 1538, 1706, 2297, 2834
MslI	CAYNNNNRTG	2 cut(s)	1032, 1767
Msp20I	TGGCCA	1 cut(s)	939
MspA1I	CMGCKG	1 cut(s)	2318
MspI	CCGG	5 cut(s)	566, 624, 1468, 1656, 3226
MspR9I	CCNGG	9 cut(s)	47, 213, 1468, 1657, 2028, 2088, 2712, 2899, 3159
MunI	CAATTG	1 cut(s)	1323
Mva1269I	GAATGC	2 cut(s)	31, 2775
MvaI	CCWGG	7 cut(s)	47, 213, 2028, 2088, 2712, 2899, 3159
MvnI	CGCG	2 cut(s)	487, 3276
MwoI	GCNNNNNNNGC	5 cut(s)	11, 56, 1685, 2006, 2606
NciI	CCSGG	2 cut(s)	1468, 1657
NcoI	CCATGG	4 cut(s)	940, 1187, 1261, 2844
NdeI	CATATG	1 cut(s)	722
NheI	GCTAGC	1 cut(s)	14
NlaIV	GGNNCC	1 cut(s)	622
NmuCI	GTSAC	8 cut(s)	35, 579, 883, 1118, 1204, 1896, 2667, 2950
NruI	TCGCGA	1 cut(s)	3276
NsiI	ATGCAT	1 cut(s)	637
NspI	RCATGY	6 cut(s)	587, 875, 1338, 1568, 1823, 1914
PaeI	GCATGC	1 cut(s)	875
PaqCI	CACCTGC	1 cut(s)	3376
PasI	CCCWGGG	1 cut(s)	2898
PciI	ACATGT	2 cut(s)	583, 1819
PciSI	GCTCTTC	1 cut(s)	3189
PcsI	WCGNNNNNNNCGW	1 cut(s)	244
PctI	GAATGC	2 cut(s)	31, 2775
PdmI	GAANNNNTTC	1 cut(s)	298
PflMI	CCANNNNNTGG	2 cut(s)	946, 2756
PfoI	TCCNGGA	1 cut(s)	2026
PleI	GAGTC	6 cut(s)	795, 832, 2773, 2849, 2881, 3047
PpsI	GAGTC	6 cut(s)	795, 832, 2773, 2849, 2881, 3047
Ppu21I	YACGTR	2 cut(s)	1065, 3344
PpuMI	RGGWCCY	1 cut(s)	1145
PscI	ACATGT	2 cut(s)	583, 1819
PshAI	GACNNNNGTC	1 cut(s)	1796
PsiI	TTATAA	1 cut(s)	2663
Psp124BI	GAGCTC	1 cut(s)	3361
Psp5II	RGGWCCY	1 cut(s)	1145
Psp6I	CCWGG	7 cut(s)	45, 211, 2026, 2086, 2710, 2897, 3157
PspEI	GGTNACC	1 cut(s)	2950
PspFI	CCCAGC	3 cut(s)	662, 1049, 1088
PspGI	CCWGG	7 cut(s)	45, 211, 2026, 2086, 2710, 2897, 3157
PspN4I	GGNNCC	1 cut(s)	622
PspPI	GGNCC	3 cut(s)	1145, 1184, 3059
PspPPI	RGGWCCY	1 cut(s)	1145
PstI	CTGCAG	1 cut(s)	2626
PstNI	CAGNNNCTG	5 cut(s)	82, 1122, 2321, 2621, 3329
PsuI	RGATCY	4 cut(s)	7, 620, 3089, 3202
PvuII	CAGCTG	1 cut(s)	2318
RruI	TCGCGA	1 cut(s)	3276
RsaI	GTAC	9 cut(s)	425, 484, 846, 1078, 1585, 2184, 3085, 3287, 3296
RsaNI	GTAC	9 cut(s)	424, 483, 845, 1077, 1584, 2183, 3084, 3286, 3295
RseI	CAYNNNNRTG	2 cut(s)	1032, 1767
SacI	GAGCTC	1 cut(s)	3361
SapI	GCTCTTC	1 cut(s)	3189
SaqAI	TTAA	6 cut(s)	753, 1473, 1538, 1706, 2297, 2834
Sau96I	GGNCC	3 cut(s)	1145, 1184, 3059
ScaI	AGTACT	1 cut(s)	1585
SchI	GAGTC	6 cut(s)	796, 833, 2774, 2849, 2881, 3047
ScrFI	CCNGG	9 cut(s)	47, 213, 1468, 1657, 2028, 2088, 2712, 2899, 3159
SduI	GDGCHC	6 cut(s)	76, 661, 1533, 1907, 1974, 3361
SexAI	ACCWGGT	1 cut(s)	2086
SfaNI	GCATC	4 cut(s)	599, 622, 691, 3380
SfcI	CTRYAG	3 cut(s)	1359, 2622, 2862
SinI	GGWCC	2 cut(s)	1145, 1184
SmiMI	CAYNNNNRTG	2 cut(s)	1032, 1767
SmlI	CTYRAG	6 cut(s)	199, 1151, 2274, 2398, 2601, 2684
SmoI	CTYRAG	6 cut(s)	199, 1151, 2274, 2398, 2601, 2684
SpeI	ACTAGT	1 cut(s)	995
SphI	GCATGC	1 cut(s)	875
SsiI	CCGC	5 cut(s)	388, 551, 1527, 2648, 3000
SstI	GAGCTC	1 cut(s)	3361
StyD4I	CCNGG	9 cut(s)	45, 211, 1466, 1655, 2026, 2086, 2710, 2897, 3157
StyI	CCWWGG	7 cut(s)	812, 879, 940, 1187, 1200, 1261, 2844
TaiI	ACGT	7 cut(s)	1067, 1484, 2196, 2530, 2931, 3303, 3346
TaqI	TCGA	9 cut(s)	124, 330, 640, 1780, 1800, 2041, 2378, 2462, 2853
TatI	WGTACW	3 cut(s)	844, 1583, 3294
TauI	GCSGC	2 cut(s)	390, 2651
Tru1I	TTAA	6 cut(s)	753, 1473, 1538, 1706, 2297, 2834
Tru9I	TTAA	6 cut(s)	753, 1473, 1538, 1706, 2297, 2834
TscAI	CASTG	7 cut(s)	1114, 1127, 1357, 1907, 1979, 2019, 2622
TseFI	GTSAC	8 cut(s)	35, 579, 883, 1118, 1204, 1896, 2667, 2950
Tsp45I	GTSAC	8 cut(s)	35, 579, 883, 1118, 1204, 1896, 2667, 2950
TspDTI	ATGAA	6 cut(s)	1016, 1272, 1389, 1734, 1971, 2934
TspGWI	ACGGA	3 cut(s)	306, 2886, 3293
TspRI	CASTG	7 cut(s)	1114, 1127, 1357, 1907, 1979, 2019, 2622
Van91I	CCANNNNNTGG	2 cut(s)	946, 2756
VneI	GTGCAC	1 cut(s)	1970
VpaK11BI	GGWCC	2 cut(s)	1145, 1184
XapI	RAATTY	4 cut(s)	1022, 1137, 2584, 3097
XceI	RCATGY	6 cut(s)	587, 875, 1338, 1568, 1823, 1914
XcmI	CCANNNNNNNNNTGG	1 cut(s)	835
XmaJI	CCTAGG	1 cut(s)	812
XmiI	GTMKAC	2 cut(s)	717, 1915
XmnI	GAANNNNTTC	1 cut(s)	298
ZrmI	AGTACT	1 cut(s)	1585
Zsp2I	ATGCAT	1 cut(s)	637

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.