Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr11

Orthogroup ID

OG0003437

Physical Location & Seq

Genomic Coordinates Reverse (-)

40220789 .. 40226499

Gene Structure 5711 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD11G1284300.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2400 bp

ATGCAAGCAACTGCCACATACTCTCTGCGACCGTTTCTTTGCATTAGACCTTTGTCTTTGTCCGATTTACGTGATTTACGTCACAGTGTTTGGCTATTTGGTGCTAATGACAAAAGAGATTTTCGATCCAAATGCAGTGCGGTTTCCAAATCCCGTACTCAAGAATATGCAGACGTGTTGCAAAATGGTCTGCCAGTGATAAAGTGGCATGAGATTGTGGAGGATGACATAGAAGGAGACGAAGCTCCTGCGGATTTTGGACAAATTAATAAGATCAAGCAACATGTGGAGACCATCACATCGATGGTGGAGTCGATGGATGACGGAGAGATTACGATTTCGGCGTACGACACCGCTTGGGTGGCGTTAGTGGAGGATGTCGAAGGCAGTGGCTTGCCACAGTTCCCATCCAGCCTCCAATGGATTGCCAACAACCAACTCCCAGATGGTTCTTGGGGAGATAGTGAGATCATCACTGCTCATGATCGCATCATCAACACCATAGCTTGCGTTGTCGCACTCAAATCATGGAACGTTCATCCTGACAAGTGTGAAAAAGGAATGACGTATTTCAAGGAGAACATAAGCAAGCTTGGCAACGAGAATGCCGAACACATGCCGATCGGGTTCGAAGTAGCTTTTCCTTCGGTTCTCGAAATGGCTAGGAGTTTAAACCTGGAGGTGCCTGATGATTGTGCTGTGTTGCATGAGATTTACGCCATGAGAGATCTAAAGCTCACAAGGATACCGAGGGAAATAATGCACAAAGTGCCCACAACACTTCTCCACAGCTTGGAAGGAATGGCAGGTTTGGACTGGGAAAAGCTTCTAAAACTGCAGTCCCAAGACGGCTCTTTCTTGTTCTCCCCAGCCTCCACTGCCTATGCACTAATGCAAACCAAAAACCCCAACTGCATGAATTATTTGTCCAAAGCTGTTCACAAGTTCAACGGCGGAGTACCTAATGTATACCCAGTTGACTTGTTCGAACACGTATGGGTTGTGGATCGTCTGCAGCGCTTGGGAATCTCTAGGTATTTCAAGCCGCAGCTTAAGGAATGTATTAATTACGTAAGCAGATATTGGACTGAGAAAGGAATTTGTTGGGCAAGAAATTCGGAGGTTCAGGATATTGATGACACAGCCATGGCATTCAGACTACTCAGGTTGCATGGCCACCAAGTGTCTCCTGATGTGTTTAAGCATTTCAAGAAGGGCAATGAATTCATCTGCTTTGCTGGGCAATCCACACAAGCTGTGACTGGAATGTACAACTTGCTTAGGGCTAGTCAGGTGATGTTCCCGGGAGAGACAATCCTTGAGGAAGCTAAGGACTTTTCAACCAAATTTCTGAGGGAAAAACAAGCTTCTAATGAGCTGCTGGACAAATGGATCATCACGAAGGACTTGCCCGGCGAGGTTGGGTACGCACTAGATGTTCCATGGTATGCGAGCTTACCTCGGCTTGAGACGAGATTCTACATCCAACAGTACGGTGGCCGTGATGACGTCTGGATTGGCAAGACTCTCTACAGGATGCCTTACGTAAACAACAATTTGTATCTCGACCTGGCAAAACTGGATTACAACAATTGCCAAGCACTGCATCTGATCGAATGGGACAGCATTCAAAAGTGGTACGCAGAATGTAAACTTGAAAACTATGGATTGAGCACAAGAAGCCTCCTCATGGCTTATTTTGTTGCGGCATCGAGTATTTTCGAGCCGGAAAGAGCCAACGAACGACTTGCATGGGCTAAAACGACGTCGTTAATTGAGACAATTGGGTCTCATTTCAGAGAAGGAACTTCTGAGCAAAGGAAGGCCTTTGTACATGAATTCAAAATTAGGAAGATGAATACCAACAAGAAAGGGCAGGGACTCATTGAGACCTTGCTGACAACCCTACACTGCCTCTCGTTGGACGCCATGGTGGCGCATGGCCAAGACATCAGCCACCCTCTACGCCAAGCTTGGGAAAAGTGGCTTCTGAAGTGGCAAGAGAAAGGAGATGTGCACCAAGATGAAGCCGAGTTGCTGGTCGAAATGATAAATCAAACCGCCGGCCTTTTGCCTTCAGACGGGCTGTTGTTGTCCAGTCCAGAGCATGAGCAACTTTTCAAGATCACCAACAAAGTTTGTAACAAACTTCGCTGCTACCAAAACCAAAACCATAAGGTGAATGAAAACGGCAGCTACATGAAGACAACTCAGGAAATCGAACCGGAGATGCAGCAGCTTGTGCAAATGGTGCTGCAAAAGCCCTTGGATGGTGCCATAGAATCTTCGATCAAGCAAACCTTTTTCGCGGTTGCAAGGAGCTTTTACTACTCTGCATGCTCGGATCCTGGAACAATCAATGGCCACCTTACCAAAGTACTGTTCGAGAGAGTATTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000287 GO:0001101 GO:0003674 GO:0003824 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006082 GO:0006629 GO:0006720 GO:0006721 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0008299 GO:0008610 GO:0009058 GO:0009507 GO:0009536 GO:0009685 GO:0009686 GO:0009719 GO:0009725 GO:0009739 GO:0009740 GO:0009755 GO:0009905 GO:0009987 GO:0010033 GO:0010476 GO:0010817 GO:0016053 GO:0016101 GO:0016102 GO:0016114 GO:0016853 GO:0016872 GO:0019752 GO:0023052 GO:0032870 GO:0033993 GO:0042221 GO:0042445 GO:0042446 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0046394 GO:0046872 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0065008 GO:0070887 GO:0071229 GO:0071310 GO:0071370 GO:0071396 GO:0071495 GO:0071704 GO:1901576 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

ko00904 ko01100 ko01110 map00904 map01100 map01110

Pfam Domains

Protein Families

Terpene_synth Terpene_synth_C

Protein Analysis

800

Amino Acids

91.37

Weight (kDa)

5.83

Isoelectric Point (pI)

40.38

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Terpene_synth	PF01397	272 - 478	1.9e-46	Terpene synthase, N-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003437)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G02780
fragaria_vesca	FvH4_2g23400 FvH4_2g23400 FvH4_2g23400 FvH4_2g23420 FvH4_2g23440 FvH4_2g23440 FvH4_2g23440
malus_domestica	MD03G1263500.v1.1 MD11G1208700.v1.1 MD11G1284300.v1.1
prunus_persica	Prupe.8G239900_v2.0.a1
pyrus_communis	pycom11g25170
rosa_chinensis	RchiOBHm_Chr6g0290871 RchiOBHm_Chr6g0290941
rosa_laevigata	RLG00000012165
rosa_multiflora	Rmu_sc0001577.1_g000003
rosa_roxburghii	Rroxscaffold_7G00176530 Rroxscaffold_7G00176670
rosa_rugosa	Rorug06G0215400 Rorug06G0215500 Rorug06G0215600 Rorug06G0215700 Rorug06G0215900 Rorug06G0216000 Rorug06G0216000
rosa_samantha	Rh6AG325900 Rh6AG326200 Rh6BG333600 Rh6BG333800 Rh6CG339300 Rh6CG339700 Rh6DG326600 Rh6DG327100
rosa_wichuraiana	Rw6G028340 Rw6G028360

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	1786
AatII	GACGTC	2 cut(s)	1512, 1769
Acc36I	ACCTGC	1 cut(s)	797
AccB1I	GGYRCC	2 cut(s)	682, 2273
AccB7I	CCANNNNNTGG	1 cut(s)	793
AccI	GTMKAC	1 cut(s)	969
AccII	CGCG	1 cut(s)	2309
AciI	CCGC	8 cut(s)	140, 251, 354, 954, 1046, 1706, 2061, 2309
AclI	AACGTT	1 cut(s)	534
AclWI	GGATC	5 cut(s)	120, 1014, 1400, 2339, 2352
AcoI	YGGCCR	4 cut(s)	1174, 1498, 1942, 2362
AcsI	RAATTY	5 cut(s)	1098, 1114, 1223, 1346, 1838
AcuI	CTGAAG	2 cut(s)	2012, 2061
AcyI	GRCGYC	3 cut(s)	1509, 1766, 1926
AdeI	CACNNNGTG	2 cut(s)	769, 1183
AfaI	GTAC	9 cut(s)	157, 347, 960, 1271, 1427, 1493, 1640, 1833, 2379
AfeI	AGCGCT	1 cut(s)	1019
AfiI	CCNNNNNNNGG	6 cut(s)	793, 1690, 1921, 1975, 2081, 2270
AflII	CTTAAG	1 cut(s)	1052
AflIII	ACRYGT	3 cut(s)	174, 283, 991
AgsI	TTSAA	9 cut(s)	574, 949, 1042, 1210, 1341, 1631, 1658, 1843, 2122
AjiI	CACGTC	1 cut(s)	175
AjnI	CCWGG	3 cut(s)	675, 1569, 2347
AjuI	GAANNNNNNNTTGG	2 cut(s)	2366, 2398
Alw21I	GWGCWC	2 cut(s)	1676, 2019
Alw26I	GTCTC	8 cut(s)	231, 284, 1191, 1304, 1463, 1772, 1794, 1883
Alw44I	GTGCAC	1 cut(s)	2015
AlwI	GGATC	5 cut(s)	120, 1014, 1400, 2339, 2352
Ama87I	CYCGRG	1 cut(s)	1303
Aor51HI	AGCGCT	1 cut(s)	1019
AoxI	GGCC	6 cut(s)	1174, 1498, 1824, 1942, 2065, 2362
ApaLI	GTGCAC	1 cut(s)	2015
ApeKI	GCWGC	8 cut(s)	1015, 1048, 1378, 2154, 2193, 2233, 2236, 2254
ApoI	RAATTY	5 cut(s)	1098, 1114, 1223, 1346, 1838
ArsI	GACNNNNNNTTYG	2 cut(s)	21, 53
AseI	ATTAAT	2 cut(s)	267, 1065
Asp700I	GAANNNNTTC	1 cut(s)	825
AspLEI	GCGC	2 cut(s)	1020, 1939
AsuC2I	CCSGG	3 cut(s)	1304, 1305, 1413
AsuHPI	GGTGA	3 cut(s)	1306, 2119, 2191
AsuII	TTCGAA	2 cut(s)	630, 987
AvaI	CYCGRG	1 cut(s)	1303
BaeGI	GKGCMC	2 cut(s)	774, 2019
BalI	TGGCCA	3 cut(s)	1176, 1944, 2364
BamHI	GGATCC	1 cut(s)	2344
BanI	GGYRCC	2 cut(s)	682, 2273
BbsI	GAAGAC	1 cut(s)	2210
Bbv12I	GWGCWC	2 cut(s)	1676, 2019
BbvI	GCAGC	8 cut(s)	1027, 1060, 1365, 2141, 2205, 2241, 2245, 2248
BccI	CCATC	6 cut(s)	298, 302, 310, 415, 440, 2264
BceAI	ACGGC	4 cut(s)	865, 967, 1485, 2206
BciT130I	CCWGG	3 cut(s)	677, 1571, 2349
BciVI	GTATCC	1 cut(s)	738
BcnI	CCSGG	3 cut(s)	1304, 1305, 1413
BcoDI	GTCTC	8 cut(s)	231, 284, 1191, 1304, 1463, 1772, 1794, 1883
BfaI	CTAG	4 cut(s)	663, 1032, 1287, 1433
BfmI	CTRYAG	3 cut(s)	836, 1013, 1531
BfoI	RGCGCY	1 cut(s)	1021
BfrI	CTTAAG	1 cut(s)	1052
BfuAI	ACCTGC	1 cut(s)	797
BfuI	GTATCC	1 cut(s)	738
BglI	GCCNNNNNGGC	1 cut(s)	1934
BglII	AGATCT	1 cut(s)	727
BmcAI	AGTACT	1 cut(s)	2379
Bme1390I	CCNGG	6 cut(s)	677, 1304, 1305, 1413, 1571, 2349
BmeT110I	CYCGRG	1 cut(s)	1303
BmgBI	CACGTC	1 cut(s)	175
BmiI	GGNNCC	3 cut(s)	684, 2275, 2346
BmrFI	CCNGG	6 cut(s)	677, 1304, 1305, 1413, 1571, 2349
BmrI	ACTGGG	2 cut(s)	826, 968
BmsI	GCATC	5 cut(s)	498, 1527, 1615, 1718, 2220
BmuI	ACTGGG	2 cut(s)	826, 968
BoxI	GACNNNNGTC	1 cut(s)	52
BpiI	GAAGAC	1 cut(s)	2210
BplI	GAGNNNNNCTC	2 cut(s)	1444, 1476
BpmI	CTGGAG	1 cut(s)	698
Bpu10I	CCTNAGC	2 cut(s)	1280, 1329
Bpu14I	TTCGAA	2 cut(s)	630, 987
BpuEI	CTTGAG	3 cut(s)	144, 1340, 1487
BpuMI	CCSGG	3 cut(s)	1304, 1305, 1413
Bsa29I	ATCGAT	1 cut(s)	302
BsaAI	YACGTR	4 cut(s)	71, 994, 1072, 1546
BsaHI	GRCGYC	3 cut(s)	1509, 1766, 1926
BsaI	GGTCTC	3 cut(s)	284, 1794, 1883
BsaJI	CCNNGG	7 cut(s)	749, 1146, 1303, 1442, 1460, 1929, 2265
BsaWI	WCCGGW	1 cut(s)	2224
Bsc4I	CCNNNNNNNGG	6 cut(s)	793, 1690, 1921, 1975, 2081, 2270
Bse118I	RCCGGY	1 cut(s)	2063
Bse1I	ACTGG	6 cut(s)	194, 821, 974, 1267, 1584, 2097
Bse3DI	GCAATG	1 cut(s)	1225
BseBI	CCWGG	3 cut(s)	677, 1571, 2349
BseCI	ATCGAT	1 cut(s)	302
BseDI	CCNNGG	7 cut(s)	749, 1146, 1303, 1442, 1460, 1929, 2265
BseGI	GGATG	8 cut(s)	229, 325, 382, 407, 538, 1482, 1542, 2275
BseLI	CCNNNNNNNGG	6 cut(s)	793, 1690, 1921, 1975, 2081, 2270
BseMI	GCAATG	1 cut(s)	1225
BseMII	CTCAG	5 cut(s)	1080, 1177, 1343, 1803, 2225
BseNI	ACTGG	6 cut(s)	194, 821, 974, 1267, 1584, 2097
BseRI	GAGGAG	1 cut(s)	1676
BseSI	GKGCMC	2 cut(s)	774, 2019
BseXI	GCAGC	8 cut(s)	1027, 1060, 1365, 2141, 2205, 2241, 2245, 2248
BseYI	CCCAGC	2 cut(s)	868, 1238
Bsh1236I	CGCG	1 cut(s)	2309
Bsh1285I	CGRYCG	2 cut(s)	32, 624
BshFI	GGCC	6 cut(s)	1176, 1500, 1826, 1944, 2067, 2364
BshNI	GGYRCC	2 cut(s)	682, 2273
BshVI	ATCGAT	1 cut(s)	302
BsiEI	CGRYCG	2 cut(s)	32, 624
BsiHKAI	GWGCWC	2 cut(s)	1676, 2019
BsiHKCI	CYCGRG	1 cut(s)	1303
BsiSI	CCGG	5 cut(s)	1304, 1413, 1727, 2064, 2225
BsiWI	CGTACG	1 cut(s)	345
BslFI	GGGAC	3 cut(s)	826, 1634, 1893
BslI	CCNNNNNNNGG	6 cut(s)	793, 1690, 1921, 1975, 2081, 2270
BsmAI	GTCTC	8 cut(s)	231, 284, 1191, 1304, 1463, 1772, 1794, 1883
BsmBI	CGTCTC	2 cut(s)	231, 1463
BsmFI	GGGAC	3 cut(s)	826, 1634, 1893
BsmI	GAATGC	3 cut(s)	610, 1151, 1626
BsnI	GGCC	6 cut(s)	1176, 1500, 1826, 1944, 2067, 2364
Bso31I	GGTCTC	3 cut(s)	284, 1794, 1883
BsoBI	CYCGRG	1 cut(s)	1303
Bsp119I	TTCGAA	2 cut(s)	630, 987
Bsp1286I	GDGCHC	3 cut(s)	774, 1676, 2019
Bsp1407I	TGTACA	2 cut(s)	1269, 1831
Bsp19I	CCATGG	3 cut(s)	1146, 1442, 1929
BspACI	CCGC	8 cut(s)	140, 251, 354, 954, 1046, 1706, 2061, 2309
BspANI	GGCC	6 cut(s)	1176, 1500, 1826, 1944, 2067, 2364
BspCNI	CTCAG	5 cut(s)	1081, 1176, 1344, 1804, 2224
BspDI	ATCGAT	1 cut(s)	302
BspFNI	CGCG	1 cut(s)	2309
BspHI	TCATGA	1 cut(s)	481
BspLI	GGNNCC	3 cut(s)	684, 2275, 2346
BspMAI	CTGCAG	2 cut(s)	840, 1017
BspMI	ACCTGC	1 cut(s)	797
BspPI	GGATC	5 cut(s)	120, 1014, 1400, 2339, 2352
BspT104I	TTCGAA	2 cut(s)	630, 987
BspT107I	GGYRCC	2 cut(s)	682, 2273
BspTI	CTTAAG	1 cut(s)	1052
BspTNI	GGTCTC	3 cut(s)	284, 1794, 1883
BsrDI	GCAATG	1 cut(s)	1225
BsrFI	RCCGGY	1 cut(s)	2063
BsrGI	TGTACA	2 cut(s)	1269, 1831
BsrI	ACTGG	6 cut(s)	194, 821, 974, 1267, 1584, 2097
BssAI	RCCGGY	1 cut(s)	2063
BssECI	CCNNGG	7 cut(s)	749, 1146, 1303, 1442, 1460, 1929, 2265
BssNAI	GTATAC	1 cut(s)	970
BssNI	GRCGYC	3 cut(s)	1509, 1766, 1926
BssT1I	CCWWGG	4 cut(s)	1146, 1442, 1929, 2265
Bst1107I	GTATAC	1 cut(s)	970
Bst2UI	CCWGG	3 cut(s)	677, 1571, 2349
Bst4CI	ACNGT	6 cut(s)	33, 86, 402, 1491, 1496, 2382
BstACI	GRCGYC	3 cut(s)	1509, 1766, 1926
BstAFI	CTTAAG	1 cut(s)	1052
BstAPI	GCANNNNNTGC	3 cut(s)	769, 2242, 2251
BstAUI	TGTACA	2 cut(s)	1269, 1831
BstBAI	YACGTR	4 cut(s)	71, 994, 1072, 1546
BstBI	TTCGAA	2 cut(s)	630, 987
BstC8I	GCNNGC	7 cut(s)	6, 395, 508, 590, 1453, 2065, 2338
BstDEI	CTNAG	7 cut(s)	1089, 1163, 1280, 1329, 1352, 1812, 2211
BstDSI	CCRYGG	3 cut(s)	1146, 1442, 1929
BstF5I	GGATG	8 cut(s)	229, 325, 382, 407, 538, 1482, 1542, 2275
BstFNI	CGCG	1 cut(s)	2309
BstH2I	RGCGCY	1 cut(s)	1021
BstHHI	GCGC	2 cut(s)	1020, 1939
BstMAI	GTCTC	8 cut(s)	231, 284, 1191, 1304, 1463, 1772, 1794, 1883
BstMCI	CGRYCG	2 cut(s)	32, 624
BstMWI	GCNNNNNNNGC	9 cut(s)	362, 594, 769, 878, 1680, 1934, 2242, 2251, 2260
BstNI	CCWGG	3 cut(s)	677, 1571, 2349
BstNSI	RCATGY	3 cut(s)	287, 619, 2340
BstPAI	GACNNNNGTC	1 cut(s)	52
BstSCI	CCNGG	6 cut(s)	675, 1302, 1303, 1411, 1569, 2347
BstSFI	CTRYAG	3 cut(s)	836, 1013, 1531
BstSLI	GKGCMC	2 cut(s)	774, 2019
BstSNI	TACGTA	2 cut(s)	1072, 1546
BstUI	CGCG	1 cut(s)	2309
BstV1I	GCAGC	8 cut(s)	1027, 1060, 1365, 2141, 2205, 2241, 2245, 2248
BstV2I	GAAGAC	1 cut(s)	2210
BstX2I	RGATCY	2 cut(s)	727, 2344
BstYI	RGATCY	2 cut(s)	727, 2344
BstZ17I	GTATAC	1 cut(s)	970
Bsu15I	ATCGAT	1 cut(s)	302
BsuI	GTATCC	1 cut(s)	738
BsuRI	GGCC	6 cut(s)	1176, 1500, 1826, 1944, 2067, 2364
BsuTUI	ATCGAT	1 cut(s)	302
BtgI	CCRYGG	3 cut(s)	1146, 1442, 1929
BtrI	CACGTC	1 cut(s)	175
BtsCI	GGATG	8 cut(s)	229, 325, 382, 407, 538, 1482, 1542, 2275
BtsI	GCAGTG	6 cut(s)	142, 394, 474, 876, 1601, 1909
BtsIMutI	CAGTG	8 cut(s)	91, 142, 201, 394, 474, 876, 1601, 1909
BveI	ACCTGC	1 cut(s)	797
Cac8I	GCNNGC	7 cut(s)	6, 395, 508, 590, 1453, 2065, 2338
CciI	TCATGA	1 cut(s)	481
CfoI	GCGC	2 cut(s)	1020, 1939
Cfr10I	RCCGGY	1 cut(s)	2063
Cfr9I	CCCGGG	1 cut(s)	1303
ClaI	ATCGAT	1 cut(s)	302
CseI	GACGC	1 cut(s)	1934
Csp6I	GTAC	9 cut(s)	156, 346, 959, 1270, 1426, 1492, 1639, 1832, 2378
CviQI	GTAC	9 cut(s)	156, 346, 959, 1270, 1426, 1492, 1639, 1832, 2378
DdeI	CTNAG	7 cut(s)	1089, 1163, 1280, 1329, 1352, 1812, 2211
DraI	TTTAAA	1 cut(s)	672
DraIII	CACNNNGTG	2 cut(s)	769, 1183
DrdI	GACNNNNNNGTC	1 cut(s)	1786
DseDI	GACNNNNNNGTC	1 cut(s)	1786
EaeI	YGGCCR	4 cut(s)	1174, 1498, 1942, 2362
EciI	GGCGGA	1 cut(s)	969
Eco105I	TACGTA	2 cut(s)	1072, 1546
Eco130I	CCWWGG	4 cut(s)	1146, 1442, 1929, 2265
Eco147I	AGGCCT	1 cut(s)	1826
Eco31I	GGTCTC	3 cut(s)	284, 1794, 1883
Eco47III	AGCGCT	1 cut(s)	1019
Eco57I	CTGAAG	2 cut(s)	2012, 2061
Eco88I	CYCGRG	1 cut(s)	1303
EcoRI	GAATTC	2 cut(s)	1223, 1838
EcoRII	CCWGG	3 cut(s)	675, 1569, 2347
EcoT14I	CCWWGG	4 cut(s)	1146, 1442, 1929, 2265
ErhI	CCWWGG	4 cut(s)	1146, 1442, 1929, 2265
Esp3I	CGTCTC	2 cut(s)	231, 1463
FalI	AAGNNNNNCTT	2 cut(s)	2285, 2317
FaqI	GGGAC	3 cut(s)	826, 1634, 1893
FblI	GTMKAC	1 cut(s)	969
FokI	GGATG	8 cut(s)	236, 332, 389, 394, 525, 1469, 1549, 2282
FspBI	CTAG	4 cut(s)	663, 1032, 1287, 1433
GlaI	GCGC	2 cut(s)	1019, 1938
GsaI	CCCAGC	2 cut(s)	872, 1242
GsuI	CTGGAG	1 cut(s)	698
HaeII	RGCGCY	1 cut(s)	1021
HaeIII	GGCC	6 cut(s)	1176, 1500, 1826, 1944, 2067, 2364
HapII	CCGG	5 cut(s)	1304, 1413, 1727, 2064, 2225
HgaI	GACGC	1 cut(s)	1934
HhaI	GCGC	2 cut(s)	1020, 1939
Hin1I	GRCGYC	3 cut(s)	1509, 1766, 1926
Hin6I	GCGC	2 cut(s)	1018, 1937
HinP1I	GCGC	2 cut(s)	1018, 1937
HincII	GTYRAC	1 cut(s)	979
HindII	GTYRAC	1 cut(s)	979
HindIII	AAGCTT	4 cut(s)	590, 824, 1365, 1971
HinfI	GANTC	6 cut(s)	311, 1026, 1476, 1525, 1881, 2282
HpaII	CCGG	5 cut(s)	1304, 1413, 1727, 2064, 2225
HphI	GGTGA	3 cut(s)	1306, 2119, 2191
Hpy166II	GTNNAC	6 cut(s)	940, 970, 979, 1549, 1652, 2017
Hpy8I	GTNNAC	6 cut(s)	940, 970, 979, 1549, 1652, 2017
Hpy99I	CGWCG	2 cut(s)	1768, 1771
HpyAV	CCTTC	9 cut(s)	227, 377, 654, 791, 1207, 1396, 1796, 1816, 2085
HpyCH4III	ACNGT	6 cut(s)	33, 86, 402, 1491, 1496, 2382
HpyF10VI	GCNNNNNNNGC	9 cut(s)	362, 594, 769, 878, 1680, 1934, 2242, 2251, 2260
HpyF3I	CTNAG	7 cut(s)	1089, 1163, 1280, 1329, 1352, 1812, 2211
Hsp92I	GRCGYC	3 cut(s)	1509, 1766, 1926
HspAI	GCGC	2 cut(s)	1018, 1937
KroI	GCCGGC	1 cut(s)	2063
KroNI	GCCGGC	1 cut(s)	2065
LmnI	GCTCC	2 cut(s)	250, 2319
Lsp1109I	GCAGC	8 cut(s)	1027, 1060, 1365, 2141, 2205, 2241, 2245, 2248
LweI	GCATC	5 cut(s)	498, 1527, 1615, 1718, 2220
MaeI	CTAG	4 cut(s)	663, 1032, 1287, 1433
MaeIII	GTNAC	3 cut(s)	80, 1258, 2141
MboII	GAAGA	3 cut(s)	1864, 2215, 2277
MfeI	CAATTG	2 cut(s)	1591, 1782
MflI	RGATCY	2 cut(s)	727, 2344
MhlI	GDGCHC	3 cut(s)	774, 1676, 2019
MlsI	TGGCCA	3 cut(s)	1176, 1944, 2364
MluNI	TGGCCA	3 cut(s)	1176, 1944, 2364
MlyI	GAGTC	3 cut(s)	320, 1519, 1875
MmeI	TCCRAC	2 cut(s)	1510, 1902
Mox20I	TGGCCA	3 cut(s)	1176, 1944, 2364
MroNI	GCCGGC	1 cut(s)	2063
MroXI	GAANNNNTTC	1 cut(s)	825
MscI	TGGCCA	3 cut(s)	1176, 1944, 2364
MseI	TTAA	6 cut(s)	267, 671, 1053, 1065, 1200, 1772
MslI	CAYNNNNRTG	3 cut(s)	302, 1145, 2022
Msp20I	TGGCCA	3 cut(s)	1176, 1944, 2364
MspCI	CTTAAG	1 cut(s)	1052
MspI	CCGG	5 cut(s)	1304, 1413, 1727, 2064, 2225
MspR9I	CCNGG	6 cut(s)	677, 1304, 1305, 1413, 1571, 2349
MssI	GTTTAAAC	1 cut(s)	672
MunI	CAATTG	2 cut(s)	1591, 1782
Mva1269I	GAATGC	3 cut(s)	610, 1151, 1626
MvaI	CCWGG	3 cut(s)	677, 1571, 2349
MvnI	CGCG	1 cut(s)	2309
MwoI	GCNNNNNNNGC	9 cut(s)	362, 594, 769, 878, 1680, 1934, 2242, 2251, 2260
NaeI	GCCGGC	1 cut(s)	2065
NciI	CCSGG	3 cut(s)	1304, 1305, 1413
NcoI	CCATGG	3 cut(s)	1146, 1442, 1929
NgoMIV	GCCGGC	1 cut(s)	2063
NlaIV	GGNNCC	3 cut(s)	684, 2275, 2346
NmeAIII	GCCGAG	2 cut(s)	1441, 2056
NmuCI	GTSAC	2 cut(s)	80, 1258
NspI	RCATGY	3 cut(s)	287, 619, 2340
NspV	TTCGAA	2 cut(s)	630, 987
PaeI	GCATGC	1 cut(s)	2340
PagI	TCATGA	1 cut(s)	481
PceI	AGGCCT	1 cut(s)	1826
PciI	ACATGT	1 cut(s)	283
PcsI	WCGNNNNNNNCGW	3 cut(s)	76, 341, 606
PctI	GAATGC	3 cut(s)	610, 1151, 1626
PdiI	GCCGGC	1 cut(s)	2065
PdmI	GAANNNNTTC	1 cut(s)	825
PfeI	GAWTC	3 cut(s)	1026, 1476, 2282
Pfl23II	CGTACG	1 cut(s)	345
PflMI	CCANNNNNTGG	1 cut(s)	793
PfoI	TCCNGGA	1 cut(s)	2347
Ple19I	CGATCG	1 cut(s)	624
PleI	GAGTC	3 cut(s)	319, 1519, 1875
PmeI	GTTTAAAC	1 cut(s)	672
PpsI	GAGTC	3 cut(s)	319, 1519, 1875
Ppu21I	YACGTR	4 cut(s)	71, 994, 1072, 1546
PscI	ACATGT	1 cut(s)	283
PshAI	GACNNNNGTC	1 cut(s)	52
PshBI	ATTAAT	2 cut(s)	267, 1065
Psp1406I	AACGTT	1 cut(s)	534
Psp6I	CCWGG	3 cut(s)	675, 1569, 2347
PspFI	CCCAGC	2 cut(s)	868, 1238
PspGI	CCWGG	3 cut(s)	675, 1569, 2347
PspLI	CGTACG	1 cut(s)	345
PspN4I	GGNNCC	3 cut(s)	684, 2275, 2346
PstI	CTGCAG	2 cut(s)	840, 1017
PsuI	RGATCY	2 cut(s)	727, 2344
PvuI	CGATCG	1 cut(s)	624
RsaI	GTAC	9 cut(s)	157, 347, 960, 1271, 1427, 1493, 1640, 1833, 2379
RsaNI	GTAC	9 cut(s)	156, 346, 959, 1270, 1426, 1492, 1639, 1832, 2378
RseI	CAYNNNNRTG	3 cut(s)	302, 1145, 2022
SaqAI	TTAA	6 cut(s)	267, 671, 1053, 1065, 1200, 1772
ScaI	AGTACT	1 cut(s)	2379
SchI	GAGTC	3 cut(s)	320, 1519, 1875
ScrFI	CCNGG	6 cut(s)	677, 1304, 1305, 1413, 1571, 2349
SduI	GDGCHC	3 cut(s)	774, 1676, 2019
SfaNI	GCATC	5 cut(s)	498, 1527, 1615, 1718, 2220
SfcI	CTRYAG	3 cut(s)	836, 1013, 1531
SfuI	TTCGAA	2 cut(s)	630, 987
SmaI	CCCGGG	1 cut(s)	1305
SmiMI	CAYNNNNRTG	3 cut(s)	302, 1145, 2022
SmlI	CTYRAG	4 cut(s)	159, 1052, 1319, 1466
SmoI	CTYRAG	4 cut(s)	159, 1052, 1319, 1466
SnaBI	TACGTA	2 cut(s)	1072, 1546
SphI	GCATGC	1 cut(s)	2340
SseBI	AGGCCT	1 cut(s)	1826
SsiI	CCGC	8 cut(s)	140, 251, 354, 954, 1046, 1706, 2061, 2309
SspMI	CTAG	4 cut(s)	663, 1032, 1287, 1433
StuI	AGGCCT	1 cut(s)	1826
StyD4I	CCNGG	6 cut(s)	675, 1302, 1303, 1411, 1569, 2347
StyI	CCWWGG	4 cut(s)	1146, 1442, 1929, 2265
TaaI	ACNGT	6 cut(s)	33, 86, 402, 1491, 1496, 2382
TatI	WGTACW	3 cut(s)	1269, 1831, 2377
TauI	GCSGC	2 cut(s)	1048, 1709
TfiI	GAWTC	3 cut(s)	1026, 1476, 2282
Tru1I	TTAA	6 cut(s)	267, 671, 1053, 1065, 1200, 1772
Tru9I	TTAA	6 cut(s)	267, 671, 1053, 1065, 1200, 1772
TscAI	CASTG	8 cut(s)	91, 142, 201, 394, 481, 883, 1608, 1916
TseFI	GTSAC	2 cut(s)	80, 1258
TseI	GCWGC	8 cut(s)	1015, 1048, 1378, 2154, 2193, 2233, 2236, 2254
Tsp45I	GTSAC	2 cut(s)	80, 1258
TspDTI	ATGAA	9 cut(s)	527, 932, 1216, 1236, 1851, 1871, 2040, 2199, 2216
TspGWI	ACGGA	1 cut(s)	339
TspMI	CCCGGG	1 cut(s)	1303
TspRI	CASTG	8 cut(s)	91, 142, 201, 394, 481, 883, 1608, 1916
Van91I	CCANNNNNTGG	1 cut(s)	793
Vha464I	CTTAAG	1 cut(s)	1052
VneI	GTGCAC	1 cut(s)	2015
VspI	ATTAAT	2 cut(s)	267, 1065
XapI	RAATTY	5 cut(s)	1098, 1114, 1223, 1346, 1838
XceI	RCATGY	3 cut(s)	287, 619, 2340
XcmI	CCANNNNNNNNNTGG	5 cut(s)	201, 301, 443, 450, 1493
XmaI	CCCGGG	1 cut(s)	1303
XmiI	GTMKAC	1 cut(s)	969
XmnI	GAANNNNTTC	1 cut(s)	825
XspI	CTAG	4 cut(s)	663, 1032, 1287, 1433
ZraI	GACGTC	2 cut(s)	1510, 1767
ZrmI	AGTACT	1 cut(s)	2379

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.