Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0003437

Physical Location & Seq

Genomic Coordinates Reverse (-)

53809728 .. 53816168

Gene Structure 6441 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ26098

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2574 bp

ATGCTGTCTTCTATGGAGGATGGGGAGATCAGCATATCAGCGTACGATACAGCATGGGTTGCTTTGGTCGAAGACGTCAATGGAACTTGTTCGCCTCATTTCCCTTCCAGCCTCGAATGGATTGCCAACAACCAGCTTGAAGATGGCTCTTGGGGCTACAAGGACGTCTTCTCTGCCCACGATCGAATCATCAGCACCCTAGCCTGTGTTGTTGCGTTGAAATCGTGGAGTCTCCACCCGGATAAATGCGACAAAGGAATGAGGTTTTTCAGGGAAAACCTAGACAAAATTGAAGACGAGAATAGTGAGCACATGCCTATAGGGTTTGAAGTTGCATTCCCTTCTGTCCTGGAAATAGCTCGGAGCTTAAACCTTGAAGTTCCTGACGAGTCTCCTGTGTTGCATGAGATCTATGCCTGCAGAAACCTGAAACTCTCAAAGATACCGAGGGACATACTGCACAATGTGGCCACATCACTGCTTTATAGCCTAGAAGGAATGGCAGGTCTTGACTGGGAAAAGCTTCTGAAACTCCAGTCCAGAGACGGGTCGTTTCTCTTTTCTCCGGCGTCTACTGCCTACGCATTGCAGCAGACAAATGATCAAAACTGCATGTCGTATCTGTCAAGAATAGTCCACAAGTTCAATGGAGGAGTCCCTAGTGTGTATCCAGTCGACTTGTTCGAACGCATGTGGGCTGTCGATCGCTTGCAGAGGTTAGGACTGTCCAGATACTTCGAGCCGGAGATTAAGGAGTGTGTTAGATACGTATCAAGGTATTGGACGGACAAAGGAATTTCTTGGGTGAGAAACTCAGAAGTTCCAGACATCGATGACACATCAATGGGGTTCAGACTGCTCCGGTTGCATGGGCATAAGGTGTCGGCTGAGGTTTATGAGTATTTTAAGAAAGGAAGTGAGTTCTTCTGCTATCCTGGACAGTCGAGCCAAGCTGTGACCGGAATATACAACTTATATAGGGCAAGTCAGTTGGCATTACCGGAAGAGAAGATCCTTGGGGATGCTAAAGAGTTTGCTACTAAATTCCTTAGAGAGAAACAAGCTTCTAATGAGCTTTTGGACAAATGGATGATAATTAAGGACTTACCTGGAGAGGGAGGAGAGAGAAATTATGTCGCAGGGAACCCAAAGCACGCCGCCGACGTCGTCGTTGAACTCAAAGAGAGAGAGAGAGCACCTGCTGAAATGTTCGTCGTTGCTTCCAAAGGAGGAGAAGGGCCTCGGGATCAGCGATCAATCGGACGGCGTTTGAGTTCTGCGTTCTCGATGCAGTTCGACTCCAGCGAGGTAGCTCCGACCGGGGTTTCTTGGTCGTCTTCAGGCGTGGAGATTGCAGATAGGGGAGAGATAGAGAGTCGGCCAGCAACGTGGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGTAGAGTGGCATGGATTCAATTTCTTAATTATACGAAGGGCAAAATTGTCATTTCGCTTTAGATTGGGTAAGAAAAAATGGCAAATCCGTACCTTTTTGCTTCGGTGCAGATATCCTCACCTGAGCAAAGTGGGTTACGCGCTGGATTTTCCATGGTATGCGAGCTTACCTCGACTGGAGACTATATTTTACATTGAACAATATGGTGGTGAAGATGATGTTTGGATTGGCAAGACTCTCTACAGCATGCCCTACATTAGCAATAATGTGTATCTGGAGCTGGCAAAGCTAGACTACAACAATTGCCAAGCATTACATCTCAAGGAATGGGACAACATTCAAAAGTGGTACAAAGAATGGAAACTCGAAGACTATGGACTGAGTGAAAAGAGTCTCCTCACGGCTTATTTTGTTGCGGCAGCGAGCATTTTCGAACCCGAAAGAGCTAATGAGCGACTTGCATGGGCTAAAACGGTATGCCTAGTTGATATAATTGTGTCTTATTTTAAGGGAGAAACTTACGATGAAGATAAGAAGGCTTTCATTGATGAATTCAAAACCTTTTCCAATATGCGAGACTATGAGAATGCAAGGAGGTCCTCCACAAACAAGACTGCAGGGCAAGGAATTGTTGGGGCTTTGCTGGCAACCCTAAGCCAACTCTCATCGGTTACAATGGCGCTACATCACCAAGACATTACCGAATCTCTAAGTCAAGCTTGGGAAAAGTGGCTACTGAAGTGGCAAGAGAAAGGGGAGAGGTACCAAGATGAAGCTGAGTTACTAGTGGAAACAATAAATCAAACCGCTGGCCTTTCACTTCGGCAAAAGTTGTTGTCCGCTGCTCCAGAATATGAGCAGCTTTTCGGCCTAACTAACAAAGTTTGCAATCAACTTCGTTGTTGCGAAAACCAAAAGAACAAGGTAAATGGCAACTGCAGAACCAAAATCAACATGACAACCCCAGAAATAGGATCATACATGCAGCAATTGGTGGAATTGGTGCTAGAAAAATCTTCCGATGACATAGAATCCTTGATTAAGCAAAGCTTTTTTACCGTAGCGAGGAGTTTTTACTATTCGACATGCTGCGACCCTGAAGTTATTAGCCACCACATTAACAAAGTACTCTTTCAGCAAGCAATTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000287 GO:0001101 GO:0003674 GO:0003824 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006082 GO:0006629 GO:0006720 GO:0006721 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0008299 GO:0008610 GO:0009058 GO:0009507 GO:0009536 GO:0009685 GO:0009686 GO:0009719 GO:0009725 GO:0009739 GO:0009740 GO:0009755 GO:0009905 GO:0009987 GO:0010033 GO:0010476 GO:0010817 GO:0016053 GO:0016101 GO:0016102 GO:0016114 GO:0016853 GO:0016872 GO:0019752 GO:0023052 GO:0032870 GO:0033993 GO:0042221 GO:0042445 GO:0042446 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0046394 GO:0046872 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0065008 GO:0070887 GO:0071229 GO:0071310 GO:0071370 GO:0071396 GO:0071495 GO:0071704 GO:1901576 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

ko00904 ko01100 ko01110 map00904 map01100 map01110

Pfam Domains

Protein Families

Terpene_synth Terpene_synth_C

Protein Analysis

857

Amino Acids

98.52

Weight (kDa)

5.76

Isoelectric Point (pI)

38.81

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Terpene_synth	PF01397	171 - 357	7.9e-42	Terpene synthase, N-terminal domain
Terpene_synth_C	PF03936	593 - 722	4.7e-07	Terpene synthase family, metal binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0003437)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G02780
fragaria_vesca	FvH4_2g23400 FvH4_2g23400 FvH4_2g23400 FvH4_2g23420 FvH4_2g23440 FvH4_2g23440 FvH4_2g23440
malus_domestica	MD03G1263500.v1.1 MD11G1208700.v1.1 MD11G1284300.v1.1
prunus_persica	Prupe.8G239900_v2.0.a1
pyrus_communis	pycom11g25170
rosa_chinensis	RchiOBHm_Chr6g0290871 RchiOBHm_Chr6g0290941
rosa_laevigata	RLG00000012165
rosa_multiflora	Rmu_sc0001577.1_g000003
rosa_roxburghii	Rroxscaffold_7G00176530 Rroxscaffold_7G00176670
rosa_rugosa	Rorug06G0215400 Rorug06G0215500 Rorug06G0215600 Rorug06G0215700 Rorug06G0215900 Rorug06G0216000 Rorug06G0216000
rosa_samantha	Rh6AG325900 Rh6AG326200 Rh6BG333600 Rh6BG333800 Rh6CG339300 Rh6CG339700 Rh6DG326600 Rh6DG327100
rosa_wichuraiana	Rw6G028340 Rw6G028360

Restriction Enzyme Sites

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Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	1207
AatII	GACGTC	3 cut(s)	78, 168, 1167
Acc36I	ACCTGC	2 cut(s)	494, 1207
Acc65I	GGTACC	1 cut(s)	2187
AccB1I	GGYRCC	1 cut(s)	2187
AccI	GTMKAC	2 cut(s)	572, 675
AccII	CGCG	1 cut(s)	1565
AciI	CCGC	4 cut(s)	1158, 1841, 2232, 2265
AclWI	GGATC	3 cut(s)	1006, 1254, 2407
AcoI	YGGCCR	2 cut(s)	468, 1379
AcsI	RAATTY	3 cut(s)	795, 1043, 1976
AcuI	CTGAAG	3 cut(s)	1323, 2183, 2544
AcyI	GRCGYC	4 cut(s)	75, 165, 569, 1164
AdeI	CACNNNGTG	1 cut(s)	466
AfaI	GTAC	5 cut(s)	44, 1516, 1775, 2189, 2553
AfiI	CCNNNNNNNGG	4 cut(s)	546, 1115, 2396, 2490
AhlI	ACTAGT	1 cut(s)	2209
AjnI	CCWGG	3 cut(s)	348, 934, 1108
Alw21I	GWGCWC	2 cut(s)	312, 1198
Alw26I	GTCTC	6 cut(s)	236, 396, 537, 1598, 1823, 1995
AlwI	GGATC	3 cut(s)	1006, 1254, 2407
Ama87I	CYCGRG	1 cut(s)	1242
AoxI	GGCC	5 cut(s)	468, 1238, 1379, 2236, 2293
ApeKI	GCWGC	6 cut(s)	589, 1844, 2267, 2284, 2410, 2514
ApoI	RAATTY	3 cut(s)	795, 1043, 1976
Asp700I	GAANNNNTTC	3 cut(s)	88, 522, 1964
Asp718I	GGTACC	1 cut(s)	2187
AspLEI	GCGC	2 cut(s)	1567, 2107
AspS9I	GGNCC	2 cut(s)	1238, 2022
AsuC2I	CCSGG	2 cut(s)	239, 1321
AsuHPI	GGTGA	4 cut(s)	817, 1535, 1646, 2105
AsuII	TTCGAA	2 cut(s)	684, 1857
AvaI	CYCGRG	1 cut(s)	1242
AvaII	GGWCC	1 cut(s)	2022
BalI	TGGCCA	1 cut(s)	470
BanI	GGYRCC	1 cut(s)	2187
BarI	GAAGNNNNNNTAC	2 cut(s)	2190, 2222
BbsI	GAAGAC	5 cut(s)	78, 160, 300, 1329, 1800
Bbv12I	GWGCWC	2 cut(s)	312, 1198
BbvCI	CCTCAGC	1 cut(s)	888
BbvI	GCAGC	6 cut(s)	601, 1856, 2254, 2296, 2422, 2501
BccI	CCATC	2 cut(s)	14, 137
BceAI	ACGGC	2 cut(s)	1280, 1842
BcgI	CGANNNNNNTGC	2 cut(s)	104, 138
BciT130I	CCWGG	3 cut(s)	350, 936, 1110
BciVI	GTATCC	1 cut(s)	678
BclI	TGATCA	1 cut(s)	601
BcnI	CCSGG	2 cut(s)	239, 1321
BcoDI	GTCTC	6 cut(s)	236, 396, 537, 1598, 1823, 1995
BcuI	ACTAGT	1 cut(s)	2209
BfaI	CTAG	8 cut(s)	200, 281, 491, 660, 1715, 1907, 2210, 2432
BfmI	CTRYAG	5 cut(s)	318, 418, 1666, 2040, 2362
BfoI	RGCGCY	1 cut(s)	2108
BfuAI	ACCTGC	2 cut(s)	494, 1207
BfuI	GTATCC	1 cut(s)	678
BglII	AGATCT	1 cut(s)	408
BisI	GCNGC	8 cut(s)	590, 1158, 1842, 1845, 2268, 2285, 2411, 2515
BlsI	GCNGC	8 cut(s)	591, 1159, 1843, 1846, 2269, 2286, 2412, 2516
BmcAI	AGTACT	1 cut(s)	2553
Bme1390I	CCNGG	5 cut(s)	239, 350, 936, 1110, 1321
Bme18I	GGWCC	1 cut(s)	2022
BmeT110I	CYCGRG	1 cut(s)	1242
BmgT120I	GGNCC	2 cut(s)	1238, 2022
BmiI	GGNNCC	2 cut(s)	1145, 2189
BmrFI	CCNGG	5 cut(s)	239, 350, 936, 1110, 1321
BmrI	ACTGGG	1 cut(s)	523
BmsI	GCATC	2 cut(s)	1012, 1278
BmuI	ACTGGG	1 cut(s)	523
BpiI	GAAGAC	5 cut(s)	78, 160, 300, 1329, 1800
BplI	GAGNNNNNCTC	2 cut(s)	1579, 1611
BpmI	CTGGAG	6 cut(s)	518, 1131, 1285, 1622, 1721, 2256
Bpu10I	CCTNAGC	3 cut(s)	888, 1547, 2078
Bpu14I	TTCGAA	2 cut(s)	684, 1857
BpuEI	CTTGAG	1 cut(s)	1730
BpuMI	CCSGG	2 cut(s)	239, 1321
Bsa29I	ATCGAT	1 cut(s)	831
BsaAI	YACGTR	1 cut(s)	769
BsaBI	GATNNNNATC	1 cut(s)	769
BsaHI	GRCGYC	4 cut(s)	75, 165, 569, 1164
BsaJI	CCNNGG	5 cut(s)	446, 1015, 1241, 1320, 1577
BsaWI	WCCGGW	3 cut(s)	861, 959, 1000
Bsc4I	CCNNNNNNNGG	4 cut(s)	546, 1115, 2396, 2490
Bse1I	ACTGG	4 cut(s)	518, 535, 671, 1605
Bse3DI	GCAATG	1 cut(s)	584
Bse8I	GATNNNNATC	1 cut(s)	769
BseBI	CCWGG	3 cut(s)	350, 936, 1110
BseCI	ATCGAT	1 cut(s)	831
BseDI	CCNNGG	5 cut(s)	446, 1015, 1241, 1320, 1577
BseGI	GGATG	3 cut(s)	25, 1027, 1095
BseJI	GATNNNNATC	1 cut(s)	769
BseLI	CCNNNNNNNGG	4 cut(s)	546, 1115, 2396, 2490
BseMI	GCAATG	1 cut(s)	584
BseMII	CTCAG	5 cut(s)	828, 879, 1538, 1796, 2193
BseNI	ACTGG	4 cut(s)	518, 535, 671, 1605
BseRI	GAGGAG	5 cut(s)	666, 1134, 1245, 1811, 2506
BseXI	GCAGC	6 cut(s)	601, 1856, 2254, 2296, 2422, 2501
BsgI	GTGCAG	2 cut(s)	443, 1552
Bsh1236I	CGCG	1 cut(s)	1565
Bsh1285I	CGRYCG	3 cut(s)	184, 706, 1320
BshFI	GGCC	5 cut(s)	470, 1240, 1381, 2238, 2295
BshNI	GGYRCC	1 cut(s)	2187
BshVI	ATCGAT	1 cut(s)	831
BsiEI	CGRYCG	3 cut(s)	184, 706, 1320
BsiHKAI	GWGCWC	2 cut(s)	312, 1198
BsiHKCI	CYCGRG	1 cut(s)	1242
BsiSI	CCGG	7 cut(s)	239, 566, 743, 862, 960, 1001, 1320
BsiWI	CGTACG	1 cut(s)	42
BslFI	GGGAC	3 cut(s)	464, 641, 1769
BslI	CCNNNNNNNGG	4 cut(s)	546, 1115, 2396, 2490
BsmAI	GTCTC	6 cut(s)	236, 396, 537, 1598, 1823, 1995
BsmBI	CGTCTC	1 cut(s)	537
BsmFI	GGGAC	3 cut(s)	464, 641, 1769
BsmI	GAATGC	2 cut(s)	335, 2017
BsnI	GGCC	5 cut(s)	470, 1240, 1381, 2238, 2295
BsoBI	CYCGRG	1 cut(s)	1242
Bsp119I	TTCGAA	2 cut(s)	684, 1857
Bsp1286I	GDGCHC	2 cut(s)	312, 1198
Bsp143I	GATC	9 cut(s)	27, 181, 408, 601, 703, 1011, 1246, 1253, 2399
Bsp19I	CCATGG	1 cut(s)	1577
BspACI	CCGC	4 cut(s)	1158, 1841, 2232, 2265
BspANI	GGCC	5 cut(s)	470, 1240, 1381, 2238, 2295
BspCNI	CTCAG	5 cut(s)	827, 880, 1539, 1797, 2194
BspDI	ATCGAT	1 cut(s)	831
BspFNI	CGCG	1 cut(s)	1565
BspLI	GGNNCC	2 cut(s)	1145, 2189
BspMAI	CTGCAG	3 cut(s)	422, 2044, 2366
BspMI	ACCTGC	2 cut(s)	494, 1207
BspPI	GGATC	3 cut(s)	1006, 1254, 2407
BspT104I	TTCGAA	2 cut(s)	684, 1857
BspT107I	GGYRCC	1 cut(s)	2187
BsrDI	GCAATG	1 cut(s)	584
BsrI	ACTGG	4 cut(s)	518, 535, 671, 1605
BssECI	CCNNGG	5 cut(s)	446, 1015, 1241, 1320, 1577
BssMI	GATC	9 cut(s)	27, 181, 408, 601, 703, 1011, 1246, 1253, 2399
BssNI	GRCGYC	4 cut(s)	75, 165, 569, 1164
BssT1I	CCWWGG	2 cut(s)	1015, 1577
Bst2UI	CCWGG	3 cut(s)	350, 936, 1110
Bst4CI	ACNGT	4 cut(s)	726, 942, 1900, 2485
Bst6I	CTCTTC	1 cut(s)	999
BstACI	GRCGYC	4 cut(s)	75, 165, 569, 1164
BstAPI	GCANNNNNTGC	1 cut(s)	59
BstBAI	YACGTR	1 cut(s)	769
BstBI	TTCGAA	2 cut(s)	684, 1857
BstDEI	CTNAG	8 cut(s)	814, 888, 1049, 1547, 1805, 2078, 2135, 2202
BstDSI	CCRYGG	1 cut(s)	1577
BstF5I	GGATG	3 cut(s)	25, 1027, 1095
BstFNI	CGCG	1 cut(s)	1565
BstH2I	RGCGCY	1 cut(s)	2108
BstHHI	GCGC	2 cut(s)	1567, 2107
BstKTI	GATC	9 cut(s)	30, 184, 411, 604, 706, 1014, 1249, 1256, 2402
BstMAI	GTCTC	6 cut(s)	236, 396, 537, 1598, 1823, 1995
BstMBI	GATC	9 cut(s)	27, 181, 408, 601, 703, 1011, 1246, 1253, 2399
BstMCI	CGRYCG	3 cut(s)	184, 706, 1320
BstMWI	GCNNNNNNNGC	6 cut(s)	59, 153, 575, 865, 1711, 2069
BstNI	CCWGG	3 cut(s)	350, 936, 1110
BstNSI	RCATGY	6 cut(s)	316, 616, 694, 1675, 2410, 2514
BstSCI	CCNGG	5 cut(s)	237, 348, 934, 1108, 1319
BstSFI	CTRYAG	5 cut(s)	318, 418, 1666, 2040, 2362
BstSNI	TACGTA	1 cut(s)	769
BstUI	CGCG	1 cut(s)	1565
BstV1I	GCAGC	6 cut(s)	601, 1856, 2254, 2296, 2422, 2501
BstV2I	GAAGAC	5 cut(s)	78, 160, 300, 1329, 1800
BstX2I	RGATCY	2 cut(s)	408, 1011
BstXI	CCANNNNNNTGG	1 cut(s)	1389
BstYI	RGATCY	2 cut(s)	408, 1011
Bsu15I	ATCGAT	1 cut(s)	831
BsuI	GTATCC	1 cut(s)	678
BsuRI	GGCC	5 cut(s)	470, 1240, 1381, 2238, 2295
BsuTUI	ATCGAT	1 cut(s)	831
BtgI	CCRYGG	1 cut(s)	1577
BtsCI	GGATG	3 cut(s)	25, 1027, 1095
BtsI	GCAGTG	1 cut(s)	476
BtsIMutI	CAGTG	1 cut(s)	476
BveI	ACCTGC	2 cut(s)	494, 1207
CfoI	GCGC	2 cut(s)	1567, 2107
Cfr13I	GGNCC	2 cut(s)	1238, 2022
ClaI	ATCGAT	1 cut(s)	831
CseI	GACGC	1 cut(s)	558
Csp6I	GTAC	5 cut(s)	43, 1515, 1774, 2188, 2552
CviQI	GTAC	5 cut(s)	43, 1515, 1774, 2188, 2552
DdeI	CTNAG	8 cut(s)	814, 888, 1049, 1547, 1805, 2078, 2135, 2202
DpnI	GATC	9 cut(s)	29, 183, 410, 603, 705, 1013, 1248, 1255, 2401
DpnII	GATC	9 cut(s)	27, 181, 408, 601, 703, 1011, 1246, 1253, 2399
DraIII	CACNNNGTG	1 cut(s)	466
EaeI	YGGCCR	2 cut(s)	468, 1379
Eam1104I	CTCTTC	1 cut(s)	999
EarI	CTCTTC	1 cut(s)	999
Eco105I	TACGTA	1 cut(s)	769
Eco130I	CCWWGG	2 cut(s)	1015, 1577
Eco32I	GATATC	1 cut(s)	1538
Eco47I	GGWCC	1 cut(s)	2022
Eco57I	CTGAAG	3 cut(s)	1323, 2183, 2544
Eco88I	CYCGRG	1 cut(s)	1242
EcoO109I	RGGNCCY	2 cut(s)	1238, 2022
EcoRI	GAATTC	1 cut(s)	1976
EcoRII	CCWGG	3 cut(s)	348, 934, 1108
EcoRV	GATATC	1 cut(s)	1538
EcoT14I	CCWWGG	2 cut(s)	1015, 1577
ErhI	CCWWGG	2 cut(s)	1015, 1577
Esp3I	CGTCTC	1 cut(s)	537
FalI	AAGNNNNNCTT	6 cut(s)	152, 184, 2128, 2160, 2459, 2491
FaqI	GGGAC	3 cut(s)	464, 641, 1769
FbaI	TGATCA	1 cut(s)	601
FblI	GTMKAC	2 cut(s)	572, 675
Fnu4HI	GCNGC	8 cut(s)	590, 1158, 1842, 1845, 2268, 2285, 2411, 2515
FokI	GGATG	3 cut(s)	32, 1034, 1102
Fsp4HI	GCNGC	8 cut(s)	590, 1158, 1842, 1845, 2268, 2285, 2411, 2515
FspBI	CTAG	8 cut(s)	200, 281, 491, 660, 1715, 1907, 2210, 2432
GlaI	GCGC	2 cut(s)	1566, 2106
GluI	GCNGC	8 cut(s)	590, 1158, 1842, 1845, 2268, 2285, 2411, 2515
GsuI	CTGGAG	6 cut(s)	518, 1131, 1285, 1622, 1721, 2256
HaeII	RGCGCY	1 cut(s)	2108
HaeIII	GGCC	5 cut(s)	470, 1240, 1381, 2238, 2295
HapII	CCGG	7 cut(s)	239, 566, 743, 862, 960, 1001, 1320
HgaI	GACGC	1 cut(s)	558
HhaI	GCGC	2 cut(s)	1567, 2107
Hin1I	GRCGYC	4 cut(s)	75, 165, 569, 1164
Hin6I	GCGC	2 cut(s)	1565, 2105
HinP1I	GCGC	2 cut(s)	1565, 2105
HincII	GTYRAC	1 cut(s)	676
HindII	GTYRAC	1 cut(s)	676
HindIII	AAGCTT	4 cut(s)	521, 1062, 2142, 2473
HpaII	CCGG	7 cut(s)	239, 566, 743, 862, 960, 1001, 1320
HphI	GGTGA	4 cut(s)	817, 1535, 1646, 2105
Hpy166II	GTNNAC	3 cut(s)	573, 637, 676
Hpy188I	TCNGA	7 cut(s)	363, 528, 817, 854, 1262, 1317, 2446
Hpy8I	GTNNAC	3 cut(s)	573, 637, 676
Hpy99I	CGWCG	4 cut(s)	1166, 1169, 1172, 1217
HpyAV	CCTTC	6 cut(s)	114, 351, 488, 1229, 1455, 1954
HpyCH4III	ACNGT	4 cut(s)	726, 942, 1900, 2485
HpyCH4IV	ACGT	5 cut(s)	75, 165, 768, 1164, 1388
HpyF10VI	GCNNNNNNNGC	6 cut(s)	59, 153, 575, 865, 1711, 2069
HpyF3I	CTNAG	8 cut(s)	814, 888, 1049, 1547, 1805, 2078, 2135, 2202
HpySE526I	ACGT	5 cut(s)	75, 165, 768, 1164, 1388
Hsp92I	GRCGYC	4 cut(s)	75, 165, 569, 1164
HspAI	GCGC	2 cut(s)	1565, 2105
KpnI	GGTACC	1 cut(s)	2191
Ksp22I	TGATCA	1 cut(s)	601
Kzo9I	GATC	9 cut(s)	27, 181, 408, 601, 703, 1011, 1246, 1253, 2399
LmnI	GCTCC	5 cut(s)	363, 864, 1318, 1702, 2275
Lsp1109I	GCAGC	6 cut(s)	601, 1856, 2254, 2296, 2422, 2501
LweI	GCATC	2 cut(s)	1012, 1278
MaeI	CTAG	8 cut(s)	200, 281, 491, 660, 1715, 1907, 2210, 2432
MaeII	ACGT	5 cut(s)	75, 165, 768, 1164, 1388
MaeIII	GTNAC	4 cut(s)	955, 1559, 2095, 2205
MalI	GATC	9 cut(s)	29, 183, 410, 603, 705, 1013, 1248, 1255, 2401
MboI	GATC	9 cut(s)	27, 181, 408, 601, 703, 1011, 1246, 1253, 2399
MfeI	CAATTG	2 cut(s)	1726, 2414
MflI	RGATCY	2 cut(s)	408, 1011
MhlI	GDGCHC	2 cut(s)	312, 1198
MlsI	TGGCCA	1 cut(s)	470
MluNI	TGGCCA	1 cut(s)	470
MlyI	GAGTC	7 cut(s)	238, 398, 663, 1292, 1384, 1654, 1825
MmeI	TCCRAC	1 cut(s)	1340
Mox20I	TGGCCA	1 cut(s)	470
MroXI	GAANNNNTTC	3 cut(s)	88, 522, 1964
MscI	TGGCCA	1 cut(s)	470
MseI	TTAA	8 cut(s)	368, 750, 906, 1098, 1451, 1932, 2466, 2544
MslI	CAYNNNNRTG	1 cut(s)	842
Msp20I	TGGCCA	1 cut(s)	470
MspA1I	CMGCKG	2 cut(s)	2234, 2267
MspI	CCGG	7 cut(s)	239, 566, 743, 862, 960, 1001, 1320
MspR9I	CCNGG	5 cut(s)	239, 350, 936, 1110, 1321
MunI	CAATTG	2 cut(s)	1726, 2414
Mva1269I	GAATGC	2 cut(s)	335, 2017
MvaI	CCWGG	3 cut(s)	350, 936, 1110
MvnI	CGCG	1 cut(s)	1565
MwoI	GCNNNNNNNGC	6 cut(s)	59, 153, 575, 865, 1711, 2069
NciI	CCSGG	2 cut(s)	239, 1321
NcoI	CCATGG	1 cut(s)	1577
NdeII	GATC	9 cut(s)	27, 181, 408, 601, 703, 1011, 1246, 1253, 2399
NlaIV	GGNNCC	2 cut(s)	1145, 2189
NmuCI	GTSAC	1 cut(s)	955
NspI	RCATGY	6 cut(s)	316, 616, 694, 1675, 2410, 2514
NspV	TTCGAA	2 cut(s)	684, 1857
PaeI	GCATGC	1 cut(s)	1675
PaqCI	CACCTGC	1 cut(s)	1207
PcsI	WCGNNNNNNNCGW	4 cut(s)	681, 1161, 1249, 1302
PctI	GAATGC	2 cut(s)	335, 2017
PdmI	GAANNNNTTC	3 cut(s)	88, 522, 1964
PfeI	GAWTC	4 cut(s)	186, 1440, 2129, 2456
Pfl23II	CGTACG	1 cut(s)	42
PflFI	GACNNNGTC	1 cut(s)	1166
PfoI	TCCNGGA	2 cut(s)	348, 934
PkrI	GCNGC	8 cut(s)	591, 1159, 1843, 1846, 2269, 2286, 2412, 2516
Ple19I	CGATCG	2 cut(s)	184, 706
PleI	GAGTC	7 cut(s)	237, 397, 662, 1292, 1383, 1654, 1824
PpsI	GAGTC	7 cut(s)	237, 397, 662, 1292, 1383, 1654, 1824
Ppu21I	YACGTR	1 cut(s)	769
PpuMI	RGGWCCY	1 cut(s)	2022
Psp5II	RGGWCCY	1 cut(s)	2022
Psp6I	CCWGG	3 cut(s)	348, 934, 1108
PspGI	CCWGG	3 cut(s)	348, 934, 1108
PspLI	CGTACG	1 cut(s)	42
PspN4I	GGNNCC	2 cut(s)	1145, 2189
PspPI	GGNCC	2 cut(s)	1238, 2022
PspPPI	RGGWCCY	1 cut(s)	2022
PstI	CTGCAG	3 cut(s)	422, 2044, 2366
PsuI	RGATCY	2 cut(s)	408, 1011
PsyI	GACNNNGTC	1 cut(s)	1166
PvuI	CGATCG	2 cut(s)	184, 706
RsaI	GTAC	5 cut(s)	44, 1516, 1775, 2189, 2553
RsaNI	GTAC	5 cut(s)	43, 1515, 1774, 2188, 2552
RseI	CAYNNNNRTG	1 cut(s)	842
SalI	GTCGAC	1 cut(s)	674
SaqAI	TTAA	8 cut(s)	368, 750, 906, 1098, 1451, 1932, 2466, 2544
SatI	GCNGC	8 cut(s)	590, 1158, 1842, 1845, 2268, 2285, 2411, 2515
Sau3AI	GATC	9 cut(s)	27, 181, 408, 601, 703, 1011, 1246, 1253, 2399
Sau96I	GGNCC	2 cut(s)	1238, 2022
ScaI	AGTACT	1 cut(s)	2553
SchI	GAGTC	7 cut(s)	238, 398, 663, 1292, 1384, 1654, 1825
ScrFI	CCNGG	5 cut(s)	239, 350, 936, 1110, 1321
SduI	GDGCHC	2 cut(s)	312, 1198
SfaNI	GCATC	2 cut(s)	1012, 1278
SfcI	CTRYAG	5 cut(s)	318, 418, 1666, 2040, 2362
SfuI	TTCGAA	2 cut(s)	684, 1857
SinI	GGWCC	1 cut(s)	2022
SmiMI	CAYNNNNRTG	1 cut(s)	842
SmlI	CTYRAG	1 cut(s)	1745
SmoI	CTYRAG	1 cut(s)	1745
SnaBI	TACGTA	1 cut(s)	769
SpeI	ACTAGT	1 cut(s)	2209
SphI	GCATGC	1 cut(s)	1675
SsiI	CCGC	4 cut(s)	1158, 1841, 2232, 2265
SspMI	CTAG	8 cut(s)	200, 281, 491, 660, 1715, 1907, 2210, 2432
StyD4I	CCNGG	5 cut(s)	237, 348, 934, 1108, 1319
StyI	CCWWGG	2 cut(s)	1015, 1577
TaaI	ACNGT	4 cut(s)	726, 942, 1900, 2485
TaiI	ACGT	5 cut(s)	78, 168, 771, 1167, 1391
TatI	WGTACW	1 cut(s)	2551
TauI	GCSGC	2 cut(s)	1160, 1844
TfiI	GAWTC	4 cut(s)	186, 1440, 2129, 2456
Tru1I	TTAA	8 cut(s)	368, 750, 906, 1098, 1451, 1932, 2466, 2544
Tru9I	TTAA	8 cut(s)	368, 750, 906, 1098, 1451, 1932, 2466, 2544
TscAI	CASTG	1 cut(s)	483
TseFI	GTSAC	1 cut(s)	955
TseI	GCWGC	6 cut(s)	589, 1844, 2267, 2284, 2410, 2514
Tsp45I	GTSAC	1 cut(s)	955
TspDTI	ATGAA	4 cut(s)	1957, 1965, 1989, 2211
TspGWI	ACGGA	2 cut(s)	800, 1502
TspRI	CASTG	1 cut(s)	483
Tth111I	GACNNNGTC	1 cut(s)	1166
VpaK11BI	GGWCC	1 cut(s)	2022
XapI	RAATTY	3 cut(s)	795, 1043, 1976
XceI	RCATGY	6 cut(s)	316, 616, 694, 1675, 2410, 2514
XcmI	CCANNNNNNNNNTGG	2 cut(s)	140, 644
XmiI	GTMKAC	2 cut(s)	572, 675
XmnI	GAANNNNTTC	3 cut(s)	88, 522, 1964
XspI	CTAG	8 cut(s)	200, 281, 491, 660, 1715, 1907, 2210, 2432
ZraI	GACGTC	3 cut(s)	76, 166, 1165
ZrmI	AGTACT	1 cut(s)	2553

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.