Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr11

Orthogroup ID

OG0003437

Physical Location & Seq

Genomic Coordinates Forward (+)

30389316 .. 30415637

Gene Structure 26322 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD11G1208700.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2439 bp

ATGTCTTCTGGTTCCGCCCAGCCTTTTCTCTCTGCACTCTCATCTCTTCGACGAACCACCTCCTCTTCTCTTTCCATTATTAATCAATCACCGCGAGTTTGGCTATTCGGGGCTAAAGATAAAAGATTTTTTCGCTCCAAAAGCATTACGGTTTCAAAACCCCGAACTCAAGATCTCGTGTTACAAAATAATGATCTGCTTCTGAAGCGGCCCGAGAGTGTGGAGGACGACATAGAAGGAGATGAAGCAGAGGACGACATAGAAGGAGATGAAGCAGCTCCTATGGATTTTAAATTGATTAATAAGATCAAGGAACATGTTGAATTCATTAGATCAATGTTGGCTTCGATGGAGGACGGGGAGATATCAATCTCGGCATACGACACCGCATGGGTGGCTTTAGTGGACGATGTTGAGGGTGAGGGAAGTGGTCTGCCTCAGTTTCCATCCACCCTCGATTGGATTGCCAACAATCAGCTCCTAGATGGCTCTTGGGGCGATAGTGAAAGTTTCACTGCTCATGATCGCATCATCAACACCATAGCTTGCGTTGTAGCACTCAAATCGTGGAACGTTCATCCTGACAAATGCAAAAAAGGAATGGCATATTTCAAGAAGAACATAAGTAATCTTGGGAACGAGAATGCTAAGCACATGCCGATCGGGTTTGAAATTGTTTTTCCTTCAATTATTGAAGTAGCTCGGAGTTTAAACCTGGAAGTACCTGATGACAGTCCTGTGTTGAATGAGATTTATGCCATGAGAAATCTAAAGCTCAAAAAAATACCGAGGGAAATATTGCACAAAGTGCCCACAACACTGCTCTACAGCTTGGAAGGAATGGCAGATTTGGACTGGGAAAAGCTTCTAAAACTGCAGTCCCAAGATGGCTCTTTCATGATGTCGCCGGCTTCCACTGCCTATGCCCTCATGCAGACCAGAGATCCAAATTGCTTGGCTTATTTGGCCCAGGTCGTTCACAAATTCAACGGCGGAGTCCCTAATGTATACCCAGTCGACTTGTTCGAACATGTATGGGCTGTGGATCGACTGCAGCGCTTAGGAATCTCTAGACATTTCGAGCCACAACTTAAGCAATGTATTGATTACATAAATAGATATTGGACTGAGAAAGGAATAGGTTGGGTCAGAAATTCGGAGATTCGGGATATTGATGACACATCCATGGGATTCAGACTACTCAGGTTGTATGGCCACCAAGTATATGCTGATGTGTTCAAGAATTTCAAGAAGGCCAATGAGTTCATCTGCTTGGCTGGACAAAGCACACAAGCTGTGACTGGAACGTACAACTTGTTTAGGGCTAGTCAGGTGTTGTTCCCAGGAGAGACGATCCTTGAGGAGGCTAAGGAGTTTTCCACAAAATTTCTCAGAGAAAAACAAGCTTCCAATGAGCTGATAGACAAATGGGTCATCATGAAGGACTTGCCCGGCGAGGTGGAGTACGCACTGGATGTTCCATGGTATGCGAGCTTACCTCGACTGGAGGCTAGATTCTACATCCAACAGTACGGTGGAGGAGATGACGTTTGGATTGGCAAGGTTCTCTACAGGATGCCATACGTGAACAATAATTTGTATCTCGAGCTGGCAAAACTGGACTACAACAATTGCCAAACACTGCATCTGATTGAATGGGACAACATTCAAAAGGGGTACGCAGAATGTAAACTTGAAGACTATGGATTGAGTAGAAGAAGCCTCCTCTTGGCCTATTTTGTTGCTGCGGCCAGTACTTTTGAACCGGAAAGATCCAACGAACGGCTTGCATGGGCTAAATCGACTTCCTTAATTGAGACAATTGGGTCTCATTTCAAGGAGGAAACTCCTGAACAAAGGAGGGCATTTGTGCATGAATTCAGAACTACGAAGATGAATACAAACAAGAAACGGCAGGGACTTATTGAGACCTTGCTGGCAACCATACACCACTTCTCAATGGACGCAATGGCAGCGCATAGCCAAAACATCAGCCACCCTCTCCGCCAAGCTTGGGAAAACTGGCTTCTGAAGTGGCAAGAGAAAGGAGATATGCACCAAGATGAAGCCGCGCTGCTGGTGGAAACGATAAATCAAATCGCTGGCATTTCGCTTTCAGAGGGGCCGTTGTTGTCCAATGATCTAGACCATAACCAACTTTTGAAGATCACCAACAGAGTTTGCAACAGACTTCCCTGCTACCAAAACCAAAAGCACAAGGTGAATAAAAACGGCAGCTACATCGTAACAACCAAGGAAATCGAATCAGACATGCAGCAACTCGTGCAAATGGTGCTCCAAAAGCCTTTGCACGGTGCAGAATCTTCGACCAAGCAAACCTTTTTCATAGTTGCGAGGAGCTTTTACTATTGTGCATACTCAGACCCTGAAACCATCAACCACCACATCACCAAAGTACTATTCGAGAGAGTAATTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000287 GO:0001101 GO:0003674 GO:0003824 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006082 GO:0006629 GO:0006720 GO:0006721 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0008299 GO:0008610 GO:0009058 GO:0009507 GO:0009536 GO:0009685 GO:0009686 GO:0009719 GO:0009725 GO:0009739 GO:0009740 GO:0009755 GO:0009905 GO:0009987 GO:0010033 GO:0010476 GO:0010817 GO:0016053 GO:0016101 GO:0016102 GO:0016114 GO:0016853 GO:0016872 GO:0019752 GO:0023052 GO:0032870 GO:0033993 GO:0042221 GO:0042445 GO:0042446 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0046394 GO:0046872 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0065008 GO:0070887 GO:0071229 GO:0071310 GO:0071370 GO:0071396 GO:0071495 GO:0071704 GO:1901576 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

ko00904 ko01100 ko01110 map00904 map01100 map01110

Pfam Domains

Protein Families

Terpene_synth Terpene_synth_C

Protein Analysis

813

Amino Acids

92.89

Weight (kDa)

5.83

Isoelectric Point (pI)

44.36

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Terpene_synth	PF01397	285 - 491	1.1e-44	Terpene synthase, N-terminal domain
Terpene_synth_C	PF03936	562 - 677	1.1e-07	Terpene synthase family, metal binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0003437)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G02780
fragaria_vesca	FvH4_2g23400 FvH4_2g23400 FvH4_2g23400 FvH4_2g23420 FvH4_2g23440 FvH4_2g23440 FvH4_2g23440
malus_domestica	MD03G1263500.v1.1 MD11G1208700.v1.1 MD11G1284300.v1.1
prunus_persica	Prupe.8G239900_v2.0.a1
pyrus_communis	pycom11g25170
rosa_chinensis	RchiOBHm_Chr6g0290871 RchiOBHm_Chr6g0290941
rosa_laevigata	RLG00000012165
rosa_multiflora	Rmu_sc0001577.1_g000003
rosa_roxburghii	Rroxscaffold_7G00176530 Rroxscaffold_7G00176670
rosa_rugosa	Rorug06G0215400 Rorug06G0215500 Rorug06G0215600 Rorug06G0215700 Rorug06G0215900 Rorug06G0216000 Rorug06G0216000
rosa_samantha	Rh6AG325900 Rh6AG326200 Rh6BG333600 Rh6BG333800 Rh6CG339300 Rh6CG339700 Rh6DG326600 Rh6DG327100
rosa_wichuraiana	Rw6G028340 Rw6G028360

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	2 cut(s)	1430, 1825
AccI	GTMKAC	2 cut(s)	1008, 1017
AccII	CGCG	2 cut(s)	94, 2072
AciI	CCGC	8 cut(s)	15, 92, 208, 387, 993, 1748, 2005, 2070
AclI	AACGTT	1 cut(s)	573
AclWI	GGATC	4 cut(s)	938, 1053, 1348, 1767
AcoI	YGGCCR	2 cut(s)	1213, 1749
AcsI	RAATTY	6 cut(s)	323, 983, 1153, 1243, 1385, 1877
AcuI	CTGAAG	2 cut(s)	224, 2051
AdeI	CACNNNGTG	2 cut(s)	808, 2221
AfaI	GTAC	7 cut(s)	723, 1310, 1466, 1532, 1679, 1756, 2418
AfeI	AGCGCT	1 cut(s)	1058
AfiI	CCNNNNNNNGG	6 cut(s)	459, 1363, 1729, 1782, 2014, 2312
AflII	CTTAAG	1 cut(s)	1091
AflIII	ACRYGT	2 cut(s)	316, 1030
AjnI	CCWGG	3 cut(s)	714, 969, 1342
AjuI	GAANNNNNNNTTGG	2 cut(s)	2405, 2437
Alw21I	GWGCWC	1 cut(s)	2298
Alw26I	GTCTC	4 cut(s)	1343, 1811, 1833, 1922
AlwI	GGATC	4 cut(s)	938, 1053, 1348, 1767
AlwNI	CAGNNNCTG	1 cut(s)	2387
Ama87I	CYCGRG	2 cut(s)	212, 1604
Aor51HI	AGCGCT	1 cut(s)	1058
AoxI	GGCC	7 cut(s)	209, 966, 1213, 1254, 1731, 1749, 2123
ApeKI	GCWGC	7 cut(s)	275, 1054, 1745, 1973, 2074, 2235, 2275
ApoI	RAATTY	6 cut(s)	323, 983, 1153, 1243, 1385, 1877
AseI	ATTAAT	2 cut(s)	81, 300
Asp700I	GAANNNNTTC	1 cut(s)	864
AspLEI	GCGC	3 cut(s)	1059, 1978, 2074
AspS9I	GGNCC	3 cut(s)	210, 967, 2123
AsuC2I	CCSGG	1 cut(s)	1452
AsuHPI	GGTGA	5 cut(s)	81, 431, 2161, 2233, 2401
AsuII	TTCGAA	1 cut(s)	1026
AvaI	CYCGRG	2 cut(s)	212, 1604
BaeGI	GKGCMC	1 cut(s)	813
BalI	TGGCCA	1 cut(s)	1215
BauI	CACGAG	2 cut(s)	176, 2282
BbsI	GAAGAC	1 cut(s)	1704
Bbv12I	GWGCWC	1 cut(s)	2298
BbvI	GCAGC	7 cut(s)	287, 1066, 1732, 1985, 2061, 2247, 2287
BccI	CCATC	5 cut(s)	343, 454, 479, 881, 2402
BceAI	ACGGC	5 cut(s)	1006, 1799, 1928, 2110, 2248
BciT130I	CCWGG	3 cut(s)	716, 971, 1344
BcnI	CCSGG	1 cut(s)	1452
BcoDI	GTCTC	4 cut(s)	1343, 1811, 1833, 1922
BfaI	CTAG	5 cut(s)	482, 1071, 1326, 1512, 2144
BfmI	CTRYAG	4 cut(s)	826, 875, 1052, 1570
BfoI	RGCGCY	1 cut(s)	1060
BfrI	CTTAAG	1 cut(s)	1091
BglII	AGATCT	1 cut(s)	172
BlpI	GCTNAGC	1 cut(s)	648
BmcAI	AGTACT	2 cut(s)	1756, 2418
Bme1390I	CCNGG	4 cut(s)	716, 971, 1344, 1452
BmeT110I	CYCGRG	2 cut(s)	212, 1604
BmgT120I	GGNCC	3 cut(s)	210, 967, 2123
BmiI	GGNNCC	2 cut(s)	13, 2124
BmrFI	CCNGG	4 cut(s)	716, 971, 1344, 1452
BmrI	ACTGGG	2 cut(s)	865, 1007
BmsI	GCATC	3 cut(s)	537, 1566, 1654
BmuI	ACTGGG	2 cut(s)	865, 1007
BpiI	GAAGAC	1 cut(s)	1704
BplI	GAGNNNNNCTC	2 cut(s)	1483, 1515
BpmI	CTGGAG	1 cut(s)	1526
Bpu10I	CCTNAGC	2 cut(s)	1060, 1368
Bpu1102I	GCTNAGC	1 cut(s)	648
Bpu14I	TTCGAA	1 cut(s)	1026
BpuEI	CTTGAG	2 cut(s)	153, 1379
BpuMI	CCSGG	1 cut(s)	1452
BsaAI	YACGTR	1 cut(s)	1585
BsaBI	GATNNNNATC	1 cut(s)	368
BsaI	GGTCTC	2 cut(s)	1833, 1922
BsaJI	CCNNGG	6 cut(s)	788, 969, 1185, 1342, 1481, 2253
BsaWI	WCCGGW	1 cut(s)	1765
BsaXI	ACNNNNNCTCC	2 cut(s)	1533, 1563
Bsc4I	CCNNNNNNNGG	6 cut(s)	459, 1363, 1729, 1782, 2014, 2312
Bse118I	RCCGGY	1 cut(s)	907
Bse1I	ACTGG	8 cut(s)	860, 1013, 1306, 1476, 1509, 1623, 1752, 2027
Bse3DI	GCAATG	2 cut(s)	1103, 1974
Bse8I	GATNNNNATC	1 cut(s)	368
BseBI	CCWGG	3 cut(s)	716, 971, 1344
BseDI	CCNNGG	6 cut(s)	788, 969, 1185, 1342, 1481, 2253
BseGI	GGATG	6 cut(s)	446, 577, 1181, 1480, 1521, 1581
BseJI	GATNNNNATC	1 cut(s)	368
BseLI	CCNNNNNNNGG	6 cut(s)	459, 1363, 1729, 1782, 2014, 2312
BseMI	GCAATG	2 cut(s)	1103, 1974
BseMII	CTCAG	5 cut(s)	452, 1119, 1216, 1405, 2394
BseNI	ACTGG	8 cut(s)	860, 1013, 1306, 1476, 1509, 1623, 1752, 2027
BseRI	GAGGAG	5 cut(s)	52, 1376, 1554, 1715, 2371
BseSI	GKGCMC	1 cut(s)	813
BseXI	GCAGC	7 cut(s)	287, 1066, 1732, 1985, 2061, 2247, 2287
BseYI	CCCAGC	1 cut(s)	18
BsgI	GTGCAG	2 cut(s)	18, 2337
Bsh1236I	CGCG	2 cut(s)	94, 2072
Bsh1285I	CGRYCG	1 cut(s)	663
BshFI	GGCC	7 cut(s)	211, 968, 1215, 1256, 1733, 1751, 2125
BsiEI	CGRYCG	1 cut(s)	663
BsiHKAI	GWGCWC	1 cut(s)	2298
BsiHKCI	CYCGRG	2 cut(s)	212, 1604
BsiSI	CCGG	3 cut(s)	908, 1452, 1766
BslFI	GGGAC	4 cut(s)	865, 983, 1673, 1932
BslI	CCNNNNNNNGG	6 cut(s)	459, 1363, 1729, 1782, 2014, 2312
BsmAI	GTCTC	4 cut(s)	1343, 1811, 1833, 1922
BsmBI	CGTCTC	1 cut(s)	1343
BsmFI	GGGAC	4 cut(s)	865, 983, 1673, 1932
BsmI	GAATGC	1 cut(s)	649
BsnI	GGCC	7 cut(s)	211, 968, 1215, 1256, 1733, 1751, 2125
Bso31I	GGTCTC	2 cut(s)	1833, 1922
BsoBI	CYCGRG	2 cut(s)	212, 1604
Bsp119I	TTCGAA	1 cut(s)	1026
Bsp1286I	GDGCHC	2 cut(s)	813, 2298
Bsp1720I	GCTNAGC	1 cut(s)	648
Bsp19I	CCATGG	2 cut(s)	1185, 1481
BspACI	CCGC	8 cut(s)	15, 92, 208, 387, 993, 1748, 2005, 2070
BspANI	GGCC	7 cut(s)	211, 968, 1215, 1256, 1733, 1751, 2125
BspCNI	CTCAG	5 cut(s)	451, 1120, 1215, 1404, 2393
BspFNI	CGCG	2 cut(s)	94, 2072
BspHI	TCATGA	3 cut(s)	520, 897, 1437
BspLI	GGNNCC	2 cut(s)	13, 2124
BspMAI	CTGCAG	2 cut(s)	879, 1056
BspPI	GGATC	4 cut(s)	938, 1053, 1348, 1767
BspT104I	TTCGAA	1 cut(s)	1026
BspTI	CTTAAG	1 cut(s)	1091
BspTNI	GGTCTC	2 cut(s)	1833, 1922
BsrDI	GCAATG	2 cut(s)	1103, 1974
BsrFI	RCCGGY	1 cut(s)	907
BsrI	ACTGG	8 cut(s)	860, 1013, 1306, 1476, 1509, 1623, 1752, 2027
BssAI	RCCGGY	1 cut(s)	907
BssECI	CCNNGG	6 cut(s)	788, 969, 1185, 1342, 1481, 2253
BssNAI	GTATAC	1 cut(s)	1009
BssSI	CACGAG	2 cut(s)	176, 2282
BssT1I	CCWWGG	3 cut(s)	1185, 1481, 2253
Bst1107I	GTATAC	1 cut(s)	1009
Bst2BI	CACGAG	2 cut(s)	176, 2282
Bst2UI	CCWGG	3 cut(s)	716, 971, 1344
Bst4CI	ACNGT	5 cut(s)	151, 734, 1530, 1535, 2315
Bst6I	CTCTTC	2 cut(s)	51, 70
BstAFI	CTTAAG	1 cut(s)	1091
BstAPI	GCANNNNNTGC	3 cut(s)	808, 2284, 2293
BstBAI	YACGTR	1 cut(s)	1585
BstBI	TTCGAA	1 cut(s)	1026
BstC8I	GCNNGC	7 cut(s)	547, 909, 1492, 1611, 1788, 1938, 2104
BstDEI	CTNAG	8 cut(s)	438, 648, 1060, 1128, 1202, 1368, 1391, 2380
BstDSI	CCRYGG	2 cut(s)	1185, 1481
BstENI	CCTNNNNNAGG	1 cut(s)	1361
BstF5I	GGATG	6 cut(s)	446, 577, 1181, 1480, 1521, 1581
BstFNI	CGCG	2 cut(s)	94, 2072
BstH2I	RGCGCY	1 cut(s)	1060
BstHHI	GCGC	3 cut(s)	1059, 1978, 2074
BstMAI	GTCTC	4 cut(s)	1343, 1811, 1833, 1922
BstMCI	CGRYCG	1 cut(s)	663
BstNI	CCWGG	3 cut(s)	716, 971, 1344
BstNSI	RCATGY	4 cut(s)	320, 658, 1034, 2275
BstSCI	CCNGG	4 cut(s)	714, 969, 1342, 1450
BstSFI	CTRYAG	4 cut(s)	826, 875, 1052, 1570
BstSLI	GKGCMC	1 cut(s)	813
BstUI	CGCG	2 cut(s)	94, 2072
BstV1I	GCAGC	7 cut(s)	287, 1066, 1732, 1985, 2061, 2247, 2287
BstV2I	GAAGAC	1 cut(s)	1704
BstX2I	RGATCY	3 cut(s)	172, 943, 1772
BstYI	RGATCY	3 cut(s)	172, 943, 1772
BstZ17I	GTATAC	1 cut(s)	1009
BsuRI	GGCC	7 cut(s)	211, 968, 1215, 1256, 1733, 1751, 2125
BtgI	CCRYGG	2 cut(s)	1185, 1481
BtsCI	GGATG	6 cut(s)	446, 577, 1181, 1480, 1521, 1581
BtsI	GCAGTG	4 cut(s)	513, 818, 915, 1640
BtsIMutI	CAGTG	5 cut(s)	513, 818, 915, 1469, 1640
Cac8I	GCNNGC	7 cut(s)	547, 909, 1492, 1611, 1788, 1938, 2104
CaiI	CAGNNNCTG	1 cut(s)	2387
CciI	TCATGA	3 cut(s)	520, 897, 1437
CfoI	GCGC	3 cut(s)	1059, 1978, 2074
Cfr10I	RCCGGY	1 cut(s)	907
Cfr13I	GGNCC	3 cut(s)	210, 967, 2123
CseI	GACGC	1 cut(s)	1973
Csp6I	GTAC	7 cut(s)	722, 1309, 1465, 1531, 1678, 1755, 2417
CviQI	GTAC	7 cut(s)	722, 1309, 1465, 1531, 1678, 1755, 2417
DdeI	CTNAG	8 cut(s)	438, 648, 1060, 1128, 1202, 1368, 1391, 2380
DraI	TTTAAA	2 cut(s)	292, 711
DraIII	CACNNNGTG	2 cut(s)	808, 2221
DrdI	GACNNNNNNGTC	2 cut(s)	1430, 1825
DseDI	GACNNNNNNGTC	2 cut(s)	1430, 1825
EaeI	YGGCCR	2 cut(s)	1213, 1749
Eam1104I	CTCTTC	2 cut(s)	51, 70
EarI	CTCTTC	2 cut(s)	51, 70
EciI	GGCGGA	3 cut(s)	4, 1008, 1994
Eco130I	CCWWGG	3 cut(s)	1185, 1481, 2253
Eco31I	GGTCTC	2 cut(s)	1833, 1922
Eco32I	GATATC	1 cut(s)	366
Eco47III	AGCGCT	1 cut(s)	1058
Eco57I	CTGAAG	2 cut(s)	224, 2051
Eco88I	CYCGRG	2 cut(s)	212, 1604
EcoNI	CCTNNNNNAGG	1 cut(s)	1361
EcoRI	GAATTC	2 cut(s)	323, 1877
EcoRII	CCWGG	3 cut(s)	714, 969, 1342
EcoRV	GATATC	1 cut(s)	366
EcoT14I	CCWWGG	3 cut(s)	1185, 1481, 2253
ErhI	CCWWGG	3 cut(s)	1185, 1481, 2253
Esp3I	CGTCTC	1 cut(s)	1343
FalI	AAGNNNNNCTT	2 cut(s)	2324, 2356
FaqI	GGGAC	4 cut(s)	865, 983, 1673, 1932
FblI	GTMKAC	2 cut(s)	1008, 1017
FokI	GGATG	6 cut(s)	433, 564, 1168, 1487, 1508, 1588
FspBI	CTAG	5 cut(s)	482, 1071, 1326, 1512, 2144
GlaI	GCGC	3 cut(s)	1058, 1977, 2073
GsaI	CCCAGC	1 cut(s)	22
GsuI	CTGGAG	1 cut(s)	1526
HaeII	RGCGCY	1 cut(s)	1060
HaeIII	GGCC	7 cut(s)	211, 968, 1215, 1256, 1733, 1751, 2125
HapII	CCGG	3 cut(s)	908, 1452, 1766
HgaI	GACGC	1 cut(s)	1973
HhaI	GCGC	3 cut(s)	1059, 1978, 2074
Hin6I	GCGC	3 cut(s)	1057, 1976, 2072
HinP1I	GCGC	3 cut(s)	1057, 1976, 2072
HincII	GTYRAC	1 cut(s)	1018
HindII	GTYRAC	1 cut(s)	1018
HindIII	AAGCTT	3 cut(s)	863, 1404, 2010
HinfI	GANTC	7 cut(s)	996, 1065, 1162, 1191, 1515, 2264, 2321
HpaII	CCGG	3 cut(s)	908, 1452, 1766
HphI	GGTGA	5 cut(s)	81, 431, 2161, 2233, 2401
Hpy166II	GTNNAC	6 cut(s)	406, 979, 1009, 1018, 1588, 1691
Hpy8I	GTNNAC	6 cut(s)	406, 979, 1009, 1018, 1588, 1691
Hpy99I	CGWCG	1 cut(s)	54
HpyAV	CCTTC	6 cut(s)	230, 257, 693, 830, 1246, 1435
HpyCH4III	ACNGT	5 cut(s)	151, 734, 1530, 1535, 2315
HpyCH4IV	ACGT	4 cut(s)	573, 1307, 1548, 1584
HpyF3I	CTNAG	8 cut(s)	438, 648, 1060, 1128, 1202, 1368, 1391, 2380
HpySE526I	ACGT	4 cut(s)	573, 1307, 1548, 1584
HspAI	GCGC	3 cut(s)	1057, 1976, 2072
KroI	GCCGGC	1 cut(s)	907
KroNI	GCCGGC	1 cut(s)	909
LmnI	GCTCC	5 cut(s)	140, 283, 483, 2301, 2358
Lsp1109I	GCAGC	7 cut(s)	287, 1066, 1732, 1985, 2061, 2247, 2287
LweI	GCATC	3 cut(s)	537, 1566, 1654
MaeI	CTAG	5 cut(s)	482, 1071, 1326, 1512, 2144
MaeII	ACGT	4 cut(s)	573, 1307, 1548, 1584
MaeIII	GTNAC	3 cut(s)	180, 1297, 2245
MboII	GAAGA	8 cut(s)	38, 57, 628, 1709, 1728, 1903, 2176, 2316
MfeI	CAATTG	2 cut(s)	1630, 1821
MflI	RGATCY	3 cut(s)	172, 943, 1772
MhlI	GDGCHC	2 cut(s)	813, 2298
MlsI	TGGCCA	1 cut(s)	1215
MluNI	TGGCCA	1 cut(s)	1215
MlyI	GAGTC	1 cut(s)	1005
MmeI	TCCRAC	2 cut(s)	1549, 1800
Mox20I	TGGCCA	1 cut(s)	1215
MroNI	GCCGGC	1 cut(s)	907
MroXI	GAANNNNTTC	1 cut(s)	864
MscI	TGGCCA	1 cut(s)	1215
MseI	TTAA	6 cut(s)	81, 291, 300, 710, 1092, 1811
MslI	CAYNNNNRTG	2 cut(s)	1184, 2061
Msp20I	TGGCCA	1 cut(s)	1215
MspCI	CTTAAG	1 cut(s)	1091
MspI	CCGG	3 cut(s)	908, 1452, 1766
MspR9I	CCNGG	4 cut(s)	716, 971, 1344, 1452
MssI	GTTTAAAC	1 cut(s)	711
MunI	CAATTG	2 cut(s)	1630, 1821
Mva1269I	GAATGC	1 cut(s)	649
MvaI	CCWGG	3 cut(s)	716, 971, 1344
MvnI	CGCG	2 cut(s)	94, 2072
NaeI	GCCGGC	1 cut(s)	909
NciI	CCSGG	1 cut(s)	1452
NcoI	CCATGG	2 cut(s)	1185, 1481
NgoMIV	GCCGGC	1 cut(s)	907
NlaIV	GGNNCC	2 cut(s)	13, 2124
NmeAIII	GCCGAG	1 cut(s)	353
NmuCI	GTSAC	1 cut(s)	1297
NspI	RCATGY	4 cut(s)	320, 658, 1034, 2275
NspV	TTCGAA	1 cut(s)	1026
PaeR7I	CTCGAG	1 cut(s)	1604
PagI	TCATGA	3 cut(s)	520, 897, 1437
PciI	ACATGT	2 cut(s)	316, 1030
PcsI	WCGNNNNNNNCGW	1 cut(s)	1023
PctI	GAATGC	1 cut(s)	649
PdiI	GCCGGC	1 cut(s)	909
PdmI	GAANNNNTTC	1 cut(s)	864
PfeI	GAWTC	6 cut(s)	1065, 1162, 1191, 1515, 2264, 2321
Ple19I	CGATCG	1 cut(s)	663
PleI	GAGTC	1 cut(s)	1004
PmeI	GTTTAAAC	1 cut(s)	711
PpsI	GAGTC	1 cut(s)	1004
Ppu21I	YACGTR	1 cut(s)	1585
PscI	ACATGT	2 cut(s)	316, 1030
PshBI	ATTAAT	2 cut(s)	81, 300
Psp1406I	AACGTT	1 cut(s)	573
Psp6I	CCWGG	3 cut(s)	714, 969, 1342
PspFI	CCCAGC	1 cut(s)	18
PspGI	CCWGG	3 cut(s)	714, 969, 1342
PspN4I	GGNNCC	2 cut(s)	13, 2124
PspPI	GGNCC	3 cut(s)	210, 967, 2123
PstI	CTGCAG	2 cut(s)	879, 1056
PstNI	CAGNNNCTG	1 cut(s)	2387
PsuI	RGATCY	3 cut(s)	172, 943, 1772
PvuI	CGATCG	1 cut(s)	663
RsaI	GTAC	7 cut(s)	723, 1310, 1466, 1532, 1679, 1756, 2418
RsaNI	GTAC	7 cut(s)	722, 1309, 1465, 1531, 1678, 1755, 2417
RseI	CAYNNNNRTG	2 cut(s)	1184, 2061
SalI	GTCGAC	1 cut(s)	1016
SaqAI	TTAA	6 cut(s)	81, 291, 300, 710, 1092, 1811
Sau96I	GGNCC	3 cut(s)	210, 967, 2123
ScaI	AGTACT	2 cut(s)	1756, 2418
SchI	GAGTC	1 cut(s)	1005
ScrFI	CCNGG	4 cut(s)	716, 971, 1344, 1452
SduI	GDGCHC	2 cut(s)	813, 2298
SfaNI	GCATC	3 cut(s)	537, 1566, 1654
SfcI	CTRYAG	4 cut(s)	826, 875, 1052, 1570
Sfr274I	CTCGAG	1 cut(s)	1604
SfuI	TTCGAA	1 cut(s)	1026
SlaI	CTCGAG	1 cut(s)	1604
SmiMI	CAYNNNNRTG	2 cut(s)	1184, 2061
SmlI	CTYRAG	4 cut(s)	168, 1091, 1358, 1604
SmoI	CTYRAG	4 cut(s)	168, 1091, 1358, 1604
SsiI	CCGC	8 cut(s)	15, 92, 208, 387, 993, 1748, 2005, 2070
SspI	AATATT	1 cut(s)	798
SspMI	CTAG	5 cut(s)	482, 1071, 1326, 1512, 2144
StyD4I	CCNGG	4 cut(s)	714, 969, 1342, 1450
StyI	CCWWGG	3 cut(s)	1185, 1481, 2253
TaaI	ACNGT	5 cut(s)	151, 734, 1530, 1535, 2315
TaiI	ACGT	4 cut(s)	576, 1310, 1551, 1587
TatI	WGTACW	2 cut(s)	1754, 2416
TauI	GCSGC	3 cut(s)	211, 1751, 2072
TfiI	GAWTC	6 cut(s)	1065, 1162, 1191, 1515, 2264, 2321
Tru1I	TTAA	6 cut(s)	81, 291, 300, 710, 1092, 1811
Tru9I	TTAA	6 cut(s)	81, 291, 300, 710, 1092, 1811
TscAI	CASTG	5 cut(s)	520, 825, 922, 1476, 1647
TseFI	GTSAC	1 cut(s)	1297
TseI	GCWGC	7 cut(s)	275, 1054, 1745, 1973, 2074, 2235, 2275
Tsp45I	GTSAC	1 cut(s)	1297
TspRI	CASTG	5 cut(s)	520, 825, 922, 1476, 1647
Vha464I	CTTAAG	1 cut(s)	1091
VspI	ATTAAT	2 cut(s)	81, 300
XagI	CCTNNNNNAGG	1 cut(s)	1361
XapI	RAATTY	6 cut(s)	323, 983, 1153, 1243, 1385, 1877
XbaI	TCTAGA	2 cut(s)	1070, 2143
XceI	RCATGY	4 cut(s)	320, 658, 1034, 2275
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1532
XhoI	CTCGAG	1 cut(s)	1604
XmiI	GTMKAC	2 cut(s)	1008, 1017
XmnI	GAANNNNTTC	1 cut(s)	864
XspI	CTAG	5 cut(s)	482, 1071, 1326, 1512, 2144
ZrmI	AGTACT	2 cut(s)	1756, 2418

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.