Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6A

Orthogroup ID

OG0003437

Physical Location & Seq

Genomic Coordinates Reverse (-)

52621893 .. 52631814

Gene Structure 9922 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6AG325900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2484 bp

ATGCCTTCTTCCGCTCACCACCTCGTTCTCTCTGTCCTAAATTCTCTACCATCACCGTCCTTTTCTTCTTTCTTCACCCACAATCAACCGAGACATTTACATGCAGGTTTTTGGTTTTTCGGGGATGAAGACAAAAGGGTTCTTCCCTTAATATGCAGTGCGGACTCTAAACCTCGCACTCGAGATTATGCACCCTTGTTGCATAAGATTGTGAAAGATGATACACAACAAAATGAAGAAACTCCTCCTACCAAGGATGACAACTCTGCATCGACCCAGATCATCAAGGAACTTGTGGACTCCGTCAAGTCCATGCTGTCTTCTATGGAGGATGGGGAGATCAGCATATCAGCGTACGATACAGCATGGGTTGCTTTGGTCGAAGACGTCAATGGAACTTGTTCGCCTCATTTCCCTTCCAGCCTCGAATGGATTGCCAACAACCAGCTTGAAGATGGCTCTTGGGGCTACAAGGACGTCTTCTCTGCCCACGATCGAATCATCAGCACCCTAGCCTGTGTTGTTGCGTTGAAATCGTGGAGTCTCCACCCGGATAAATGCGACAAAGGAATGAGGTTTTTCAGGGAAAACCTAGACAAAATTGAAGACGAGAATAGTGAGCACATGCCTATAGGGTTTGAAGTTGCATTCCCTTCTGTCCTGGAAATAGCTCGGAGCTTAAACCTTGAAGTTCCTGATGAGTCTCCTGTGTTGCATGAGATCTATGCCTGCAGAAACCTGAAACTCTCAAAGATACCGAGGGACATACTGCACAATGTGGCCACATCACTGCTTTATAGCCTAGAAGGAATGGCAGGTCTTGACTGGGAAAAGCTTCTGAAACTCCAGTCCAGAGACGGGTCGTTTCTCTTTTCTCCGGCGTCTACTGCCTACGCATTGCAGCAGACAAAGGATCAAAACTGCATGTCGTATCTGTCAAGAATAGTCCACAAGTTCAATGGAGGAGTCCCTGGTGTGTATCCAGTCGACTTGTTCGAACGCATGTGGGCTGTCGATCGCTTGCAGAGGTTAGGACTGTCCAGATACTTCGAGCCGGAGATTAAGGAGTGTGTTAGATACGTATCAAGGTATTGGACGGACAAAGGAATTTCTTGGGTGAGAAACTCAGAAGTTCCAGACATCGATGACTCATCAATGGGGTTCAGACTGCTCCGGTTGCATGGGCATAAGGTGTCGGCTGAGGTTTATGAGTATTTTAAGAAAGGAAGTGAGTTCTTCTGCTATCCTGGACAGTCGAGCCAAGCTGTGACCGGAATATACAACTTATATAGGGCAAGTCAGTTGGCATTACCGGAAGAGAAGATCCTTGGGGATGCTAAAGAGTTTGCTACTAAATTCCTTAGAGAGAAACAAGCTTCTAATGAGCTTTTGGACAAATGGATGATAATTAAGGACTTACCTGGAGAGGTGGGTTACGCGCTGGATTTTCCATGGTATGCGAGCTTACCTCGACTGGAGACTATATTTTACATTGAACAATATGGTGGTGAAGATGATGTTTGGATTGGCAAGACTCTCTACAGCATGCCCTACATTAGCAATAATGTGTATCTGGAGCTGGCAAAGCTAGACTACAACAATTGCCAAGCATTACATCTCAAGGAATGGGACAACATTCAAAAGTGGTACAAAGAATGGAAACTCGAAGACTATGGACTGAGTGAAAAGAGTCTCCTCACGGCTTATTTTGTTGCGGCAGCGAGCATTTTCGAACCCGAAAGAGCTAATGAGCGACTTGCATGGGCTAAAACGGTATGCCTAGTTGATATAATTGTGTCTTATTTTAAGGGAGAAACTTACGATGAAGATAAGAAGGCTTTCATTGATGAATTCAAAACCTTTTCCAATATGCGAGACTATGAGAATCCAAGGAGGTCCTCCACAAACAAGACTGCAGGGCAAGGAATTGTTGGGGCTTTGCTGGCAACCCTAAGCCAACTCTCATCGGTTACAATGGCGCTACATCACCAAGACATTACCGAATCTCTAAGTCAAGCTTGGGAAAAGTGGCTACTGAAGTGGCAAGAGAAAGGGGAGAGGTACCGAGATGAAGCTGAGTTACTAGTGGAAACAATAAATCAAACCGCTGGCCTTTCACTTCGGCAAAAGTTGTTGTCCGCTGCTCCAGAATATGAGCAGCTTTTCGGCCTAACTAACAAAGTTTGCAATCAACTTCGTTATTGCGAAAACCAAAAGAACAAGTGTAGCAGAAAAACTAGAATGTCAAACAAAGTTCAAGTGCATAAAAAGAAGGCCTTGTGTGAGGTTCCCAAAAGTGATTTTGGAAACTTTGAACCAACATCAAGCAACAAATCTCTCAGAGATATAACAAGGGCAATAGATAGTGATCGTATGAATCCAGTTAACTCACTAGAGGTTAATCTCACTAGTTTCTGCTTAAGAGTCAGATTCATAACAAGCACACTTCATTCAGTGATTCTAAAAGCAGTTTACAGTGCCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000287 GO:0001101 GO:0003674 GO:0003824 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006082 GO:0006629 GO:0006720 GO:0006721 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0008299 GO:0008610 GO:0009058 GO:0009507 GO:0009536 GO:0009685 GO:0009686 GO:0009719 GO:0009725 GO:0009739 GO:0009740 GO:0009755 GO:0009905 GO:0009987 GO:0010033 GO:0010476 GO:0010817 GO:0016053 GO:0016101 GO:0016102 GO:0016114 GO:0016853 GO:0016872 GO:0019752 GO:0023052 GO:0032870 GO:0033993 GO:0042221 GO:0042445 GO:0042446 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0046394 GO:0046872 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0065008 GO:0070887 GO:0071229 GO:0071310 GO:0071370 GO:0071396 GO:0071495 GO:0071704 GO:1901576 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

ko00904 ko01100 ko01110 map00904 map01100 map01110

Pfam Domains

Protein Families

Terpene_synth Terpene_synth_C

Protein Analysis

827

Amino Acids

94.65

Weight (kDa)

5.83

Isoelectric Point (pI)

37.61

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Terpene_synth	PF01397	275 - 481	1e-41	Terpene synthase, N-terminal domain
Terpene_synth_C	PF03936	551 - 682	3e-07	Terpene synthase family, metal binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

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Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Orthologous Genes (Group: OG0003437)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G02780
fragaria_vesca	FvH4_2g23400 FvH4_2g23400 FvH4_2g23400 FvH4_2g23420 FvH4_2g23440 FvH4_2g23440 FvH4_2g23440
malus_domestica	MD03G1263500.v1.1 MD11G1208700.v1.1 MD11G1284300.v1.1
prunus_persica	Prupe.8G239900_v2.0.a1
pyrus_communis	pycom11g25170
rosa_chinensis	RchiOBHm_Chr6g0290871 RchiOBHm_Chr6g0290941
rosa_laevigata	RLG00000012165
rosa_multiflora	Rmu_sc0001577.1_g000003
rosa_roxburghii	Rroxscaffold_7G00176530 Rroxscaffold_7G00176670
rosa_rugosa	Rorug06G0215400 Rorug06G0215500 Rorug06G0215600 Rorug06G0215700 Rorug06G0215900 Rorug06G0216000 Rorug06G0216000
rosa_samantha	Rh6AG325900 Rh6AG326200 Rh6BG333600 Rh6BG333800 Rh6CG339300 Rh6CG339700 Rh6DG326600 Rh6DG327100
rosa_wichuraiana	Rw6G028340 Rw6G028360

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	2 cut(s)	390, 480
Acc36I	ACCTGC	2 cut(s)	95, 806
Acc65I	GGTACC	1 cut(s)	2061
AccB1I	GGYRCC	1 cut(s)	2061
AccBSI	CCGCTC	1 cut(s)	14
AccI	GTMKAC	2 cut(s)	884, 987
AccII	CGCG	1 cut(s)	1439
AciI	CCGC	5 cut(s)	12, 161, 1715, 2106, 2139
AclWI	GGATC	2 cut(s)	921, 1318
AcoI	YGGCCR	1 cut(s)	780
AcsI	RAATTY	4 cut(s)	40, 1107, 1355, 1850
AcuI	CTGAAG	1 cut(s)	2057
AcyI	GRCGYC	3 cut(s)	387, 477, 881
AdeI	CACNNNGTG	1 cut(s)	778
AfaI	GTAC	3 cut(s)	356, 1649, 2063
AfiI	CCNNNNNNNGG	1 cut(s)	858
AflII	CTTAAG	1 cut(s)	2419
AhlI	ACTAGT	2 cut(s)	2083, 2408
AjnI	CCWGG	4 cut(s)	660, 970, 1246, 1420
Alw21I	GWGCWC	1 cut(s)	624
Alw26I	GTCTC	7 cut(s)	85, 548, 708, 849, 1472, 1697, 1869
AlwI	GGATC	2 cut(s)	921, 1318
Ama87I	CYCGRG	1 cut(s)	180
AoxI	GGCC	4 cut(s)	780, 2110, 2167, 2274
ApeKI	GCWGC	4 cut(s)	901, 1718, 2141, 2158
ApoI	RAATTY	4 cut(s)	40, 1107, 1355, 1850
Asp700I	GAANNNNTTC	3 cut(s)	400, 834, 1838
Asp718I	GGTACC	1 cut(s)	2061
AspLEI	GCGC	2 cut(s)	1441, 1981
AspS9I	GGNCC	1 cut(s)	1896
AsuC2I	CCSGG	1 cut(s)	551
AsuHPI	GGTGA	6 cut(s)	8, 45, 67, 1129, 1520, 1979
AsuII	TTCGAA	2 cut(s)	996, 1731
AvaI	CYCGRG	1 cut(s)	180
AvaII	GGWCC	1 cut(s)	1896
BalI	TGGCCA	1 cut(s)	782
BanI	GGYRCC	1 cut(s)	2061
BarI	GAAGNNNNNNTAC	2 cut(s)	2064, 2096
BbsI	GAAGAC	6 cut(s)	135, 312, 390, 472, 612, 1674
Bbv12I	GWGCWC	1 cut(s)	624
BbvCI	CCTCAGC	1 cut(s)	1200
BbvI	GCAGC	4 cut(s)	913, 1730, 2128, 2170
BccI	CCATC	3 cut(s)	58, 326, 449
BceAI	ACGGC	1 cut(s)	1716
BcgI	CGANNNNNNTGC	2 cut(s)	416, 450
BciT130I	CCWGG	4 cut(s)	662, 972, 1248, 1422
BciVI	GTATCC	1 cut(s)	990
BcnI	CCSGG	1 cut(s)	551
BcoDI	GTCTC	7 cut(s)	85, 548, 708, 849, 1472, 1697, 1869
BcuI	ACTAGT	2 cut(s)	2083, 2408
BfmI	CTRYAG	4 cut(s)	630, 730, 1540, 1914
BfoI	RGCGCY	1 cut(s)	1982
BfrI	CTTAAG	1 cut(s)	2419
BfuAI	ACCTGC	2 cut(s)	95, 806
BfuI	GTATCC	1 cut(s)	990
BglII	AGATCT	1 cut(s)	720
BisI	GCNGC	5 cut(s)	902, 1716, 1719, 2142, 2159
BlsI	GCNGC	5 cut(s)	903, 1717, 1720, 2143, 2160
Bme1390I	CCNGG	5 cut(s)	551, 662, 972, 1248, 1422
Bme18I	GGWCC	1 cut(s)	1896
BmeT110I	CYCGRG	1 cut(s)	180
BmgT120I	GGNCC	1 cut(s)	1896
BmiI	GGNNCC	2 cut(s)	2063, 2289
BmrFI	CCNGG	5 cut(s)	551, 662, 972, 1248, 1422
BmrI	ACTGGG	1 cut(s)	835
BmsI	GCATC	2 cut(s)	278, 1324
BmuI	ACTGGG	1 cut(s)	835
BpiI	GAAGAC	6 cut(s)	135, 312, 390, 472, 612, 1674
BplI	GAGNNNNNCTC	2 cut(s)	1453, 1485
BpmI	CTGGAG	5 cut(s)	830, 1443, 1496, 1595, 2130
Bpu10I	CCTNAGC	2 cut(s)	1200, 1952
Bpu14I	TTCGAA	2 cut(s)	996, 1731
BpuEI	CTTGAG	1 cut(s)	1604
BpuMI	CCSGG	1 cut(s)	551
Bsa29I	ATCGAT	1 cut(s)	1143
BsaAI	YACGTR	1 cut(s)	1081
BsaBI	GATNNNNATC	2 cut(s)	1081, 2367
BsaHI	GRCGYC	3 cut(s)	387, 477, 881
BsaJI	CCNNGG	6 cut(s)	252, 758, 970, 1327, 1451, 1889
BsaWI	WCCGGW	3 cut(s)	1173, 1271, 1312
Bsc4I	CCNNNNNNNGG	1 cut(s)	858
Bse1I	ACTGG	5 cut(s)	830, 847, 983, 1479, 2381
Bse3DI	GCAATG	1 cut(s)	896
Bse8I	GATNNNNATC	2 cut(s)	1081, 2367
BseBI	CCWGG	4 cut(s)	662, 972, 1248, 1422
BseCI	ATCGAT	1 cut(s)	1143
BseDI	CCNNGG	6 cut(s)	252, 758, 970, 1327, 1451, 1889
BseGI	GGATG	5 cut(s)	130, 262, 337, 1339, 1407
BseJI	GATNNNNATC	2 cut(s)	1081, 2367
BseLI	CCNNNNNNNGG	1 cut(s)	858
BseMI	GCAATG	1 cut(s)	896
BseMII	CTCAG	5 cut(s)	1140, 1191, 1670, 2067, 2353
BseNI	ACTGG	5 cut(s)	830, 847, 983, 1479, 2381
BseRI	GAGGAG	3 cut(s)	234, 978, 1685
BseXI	GCAGC	4 cut(s)	913, 1730, 2128, 2170
BsgI	GTGCAG	1 cut(s)	755
Bsh1236I	CGCG	1 cut(s)	1439
Bsh1285I	CGRYCG	2 cut(s)	496, 1018
BshFI	GGCC	4 cut(s)	782, 2112, 2169, 2276
BshNI	GGYRCC	1 cut(s)	2061
BshVI	ATCGAT	1 cut(s)	1143
BsiEI	CGRYCG	2 cut(s)	496, 1018
BsiHKAI	GWGCWC	1 cut(s)	624
BsiHKCI	CYCGRG	1 cut(s)	180
BsiSI	CCGG	6 cut(s)	551, 878, 1055, 1174, 1272, 1313
BsiWI	CGTACG	1 cut(s)	354
BslFI	GGGAC	3 cut(s)	776, 953, 1643
BslI	CCNNNNNNNGG	1 cut(s)	858
BsmAI	GTCTC	7 cut(s)	85, 548, 708, 849, 1472, 1697, 1869
BsmBI	CGTCTC	1 cut(s)	849
BsmFI	GGGAC	3 cut(s)	776, 953, 1643
BsmI	GAATGC	1 cut(s)	647
BsnI	GGCC	4 cut(s)	782, 2112, 2169, 2276
BsoBI	CYCGRG	1 cut(s)	180
Bsp119I	TTCGAA	2 cut(s)	996, 1731
Bsp1286I	GDGCHC	1 cut(s)	624
Bsp143I	GATC	8 cut(s)	279, 339, 493, 720, 913, 1015, 1323, 2368
Bsp19I	CCATGG	1 cut(s)	1451
BspACI	CCGC	5 cut(s)	12, 161, 1715, 2106, 2139
BspANI	GGCC	4 cut(s)	782, 2112, 2169, 2276
BspCNI	CTCAG	5 cut(s)	1139, 1192, 1671, 2068, 2352
BspDI	ATCGAT	1 cut(s)	1143
BspFNI	CGCG	1 cut(s)	1439
BspLI	GGNNCC	2 cut(s)	2063, 2289
BspMAI	CTGCAG	2 cut(s)	734, 1918
BspMI	ACCTGC	2 cut(s)	95, 806
BspPI	GGATC	2 cut(s)	921, 1318
BspT104I	TTCGAA	2 cut(s)	996, 1731
BspT107I	GGYRCC	1 cut(s)	2061
BspTI	CTTAAG	1 cut(s)	2419
BsrBI	CCGCTC	1 cut(s)	14
BsrDI	GCAATG	1 cut(s)	896
BsrI	ACTGG	5 cut(s)	830, 847, 983, 1479, 2381
BssECI	CCNNGG	6 cut(s)	252, 758, 970, 1327, 1451, 1889
BssMI	GATC	8 cut(s)	279, 339, 493, 720, 913, 1015, 1323, 2368
BssNI	GRCGYC	3 cut(s)	387, 477, 881
BssT1I	CCWWGG	4 cut(s)	252, 1327, 1451, 1889
Bst2UI	CCWGG	4 cut(s)	662, 972, 1248, 1422
Bst4CI	ACNGT	5 cut(s)	57, 1038, 1254, 1774, 2477
Bst6I	CTCTTC	1 cut(s)	1311
BstACI	GRCGYC	3 cut(s)	387, 477, 881
BstAFI	CTTAAG	1 cut(s)	2419
BstAPI	GCANNNNNTGC	1 cut(s)	371
BstBAI	YACGTR	1 cut(s)	1081
BstBI	TTCGAA	2 cut(s)	996, 1731
BstC8I	GCNNGC	8 cut(s)	730, 1022, 1462, 1547, 1581, 1723, 1944, 2110
BstDEI	CTNAG	8 cut(s)	1126, 1200, 1361, 1679, 1952, 2009, 2076, 2339
BstDSI	CCRYGG	1 cut(s)	1451
BstF5I	GGATG	5 cut(s)	130, 262, 337, 1339, 1407
BstFNI	CGCG	1 cut(s)	1439
BstH2I	RGCGCY	1 cut(s)	1982
BstHHI	GCGC	2 cut(s)	1441, 1981
BstKTI	GATC	8 cut(s)	282, 342, 496, 723, 916, 1018, 1326, 2371
BstMAI	GTCTC	7 cut(s)	85, 548, 708, 849, 1472, 1697, 1869
BstMBI	GATC	8 cut(s)	279, 339, 493, 720, 913, 1015, 1323, 2368
BstMCI	CGRYCG	2 cut(s)	496, 1018
BstMWI	GCNNNNNNNGC	6 cut(s)	371, 465, 887, 1177, 1585, 1943
BstNI	CCWGG	4 cut(s)	662, 972, 1248, 1422
BstNSI	RCATGY	5 cut(s)	104, 628, 928, 1006, 1549
BstSCI	CCNGG	5 cut(s)	549, 660, 970, 1246, 1420
BstSFI	CTRYAG	4 cut(s)	630, 730, 1540, 1914
BstSNI	TACGTA	1 cut(s)	1081
BstUI	CGCG	1 cut(s)	1439
BstV1I	GCAGC	4 cut(s)	913, 1730, 2128, 2170
BstV2I	GAAGAC	6 cut(s)	135, 312, 390, 472, 612, 1674
BstX2I	RGATCY	2 cut(s)	720, 1323
BstYI	RGATCY	2 cut(s)	720, 1323
Bsu15I	ATCGAT	1 cut(s)	1143
BsuI	GTATCC	1 cut(s)	990
BsuRI	GGCC	4 cut(s)	782, 2112, 2169, 2276
BsuTUI	ATCGAT	1 cut(s)	1143
BtgI	CCRYGG	1 cut(s)	1451
BtsCI	GGATG	5 cut(s)	130, 262, 337, 1339, 1407
BtsI	GCAGTG	2 cut(s)	163, 788
BtsIMutI	CAGTG	4 cut(s)	163, 788, 2460, 2482
BveI	ACCTGC	2 cut(s)	95, 806
Cac8I	GCNNGC	8 cut(s)	730, 1022, 1462, 1547, 1581, 1723, 1944, 2110
CfoI	GCGC	2 cut(s)	1441, 1981
Cfr13I	GGNCC	1 cut(s)	1896
ClaI	ATCGAT	1 cut(s)	1143
CseI	GACGC	1 cut(s)	870
Csp6I	GTAC	3 cut(s)	355, 1648, 2062
CviQI	GTAC	3 cut(s)	355, 1648, 2062
DdeI	CTNAG	8 cut(s)	1126, 1200, 1361, 1679, 1952, 2009, 2076, 2339
DpnI	GATC	8 cut(s)	281, 341, 495, 722, 915, 1017, 1325, 2370
DpnII	GATC	8 cut(s)	279, 339, 493, 720, 913, 1015, 1323, 2368
DraIII	CACNNNGTG	1 cut(s)	778
EaeI	YGGCCR	1 cut(s)	780
Eam1104I	CTCTTC	1 cut(s)	1311
EarI	CTCTTC	1 cut(s)	1311
Eco105I	TACGTA	1 cut(s)	1081
Eco130I	CCWWGG	4 cut(s)	252, 1327, 1451, 1889
Eco147I	AGGCCT	1 cut(s)	2276
Eco47I	GGWCC	1 cut(s)	1896
Eco57I	CTGAAG	1 cut(s)	2057
Eco88I	CYCGRG	1 cut(s)	180
EcoO109I	RGGNCCY	1 cut(s)	1896
EcoRI	GAATTC	1 cut(s)	1850
EcoRII	CCWGG	4 cut(s)	660, 970, 1246, 1420
EcoT14I	CCWWGG	4 cut(s)	252, 1327, 1451, 1889
ErhI	CCWWGG	4 cut(s)	252, 1327, 1451, 1889
Esp3I	CGTCTC	1 cut(s)	849
FalI	AAGNNNNNCTT	6 cut(s)	464, 496, 2002, 2034, 2261, 2293
FaqI	GGGAC	3 cut(s)	776, 953, 1643
FblI	GTMKAC	2 cut(s)	884, 987
Fnu4HI	GCNGC	5 cut(s)	902, 1716, 1719, 2142, 2159
FokI	GGATG	5 cut(s)	137, 269, 344, 1346, 1414
Fsp4HI	GCNGC	5 cut(s)	902, 1716, 1719, 2142, 2159
GlaI	GCGC	2 cut(s)	1440, 1980
GluI	GCNGC	5 cut(s)	902, 1716, 1719, 2142, 2159
GsuI	CTGGAG	5 cut(s)	830, 1443, 1496, 1595, 2130
HaeII	RGCGCY	1 cut(s)	1982
HaeIII	GGCC	4 cut(s)	782, 2112, 2169, 2276
HapII	CCGG	6 cut(s)	551, 878, 1055, 1174, 1272, 1313
HgaI	GACGC	1 cut(s)	870
HhaI	GCGC	2 cut(s)	1441, 1981
Hin1I	GRCGYC	3 cut(s)	387, 477, 881
Hin6I	GCGC	2 cut(s)	1439, 1979
HinP1I	GCGC	2 cut(s)	1439, 1979
HincII	GTYRAC	2 cut(s)	988, 2386
HindII	GTYRAC	2 cut(s)	988, 2386
HindIII	AAGCTT	3 cut(s)	833, 1374, 2016
HpaI	GTTAAC	1 cut(s)	2386
HpaII	CCGG	6 cut(s)	551, 878, 1055, 1174, 1272, 1313
HphI	GGTGA	6 cut(s)	8, 45, 67, 1129, 1520, 1979
Hpy166II	GTNNAC	6 cut(s)	298, 885, 949, 988, 2386, 2473
Hpy188I	TCNGA	6 cut(s)	675, 840, 1129, 1166, 2342, 2429
Hpy188III	TCNNGA	9 cut(s)	182, 695, 821, 852, 939, 1041, 1136, 1574, 2147
Hpy8I	GTNNAC	6 cut(s)	298, 885, 949, 988, 2386, 2473
HpyAV	CCTTC	6 cut(s)	15, 426, 663, 800, 1828, 2266
HpyCH4III	ACNGT	5 cut(s)	57, 1038, 1254, 1774, 2477
HpyCH4IV	ACGT	3 cut(s)	387, 477, 1080
HpyF10VI	GCNNNNNNNGC	6 cut(s)	371, 465, 887, 1177, 1585, 1943
HpyF3I	CTNAG	8 cut(s)	1126, 1200, 1361, 1679, 1952, 2009, 2076, 2339
HpySE526I	ACGT	3 cut(s)	387, 477, 1080
Hsp92I	GRCGYC	3 cut(s)	387, 477, 881
HspAI	GCGC	2 cut(s)	1439, 1979
KpnI	GGTACC	1 cut(s)	2065
KspAI	GTTAAC	1 cut(s)	2386
Kzo9I	GATC	8 cut(s)	279, 339, 493, 720, 913, 1015, 1323, 2368
LmnI	GCTCC	4 cut(s)	675, 1176, 1576, 2149
Lsp1109I	GCAGC	4 cut(s)	913, 1730, 2128, 2170
LweI	GCATC	2 cut(s)	278, 1324
MaeII	ACGT	3 cut(s)	387, 477, 1080
MaeIII	GTNAC	4 cut(s)	1267, 1433, 1969, 2079
MalI	GATC	8 cut(s)	281, 341, 495, 722, 915, 1017, 1325, 2370
MbiI	CCGCTC	1 cut(s)	14
MboI	GATC	8 cut(s)	279, 339, 493, 720, 913, 1015, 1323, 2368
MfeI	CAATTG	1 cut(s)	1600
MflI	RGATCY	2 cut(s)	720, 1323
MhlI	GDGCHC	1 cut(s)	624
MlsI	TGGCCA	1 cut(s)	782
MluCI	AATT	9 cut(s)	40, 600, 1107, 1355, 1407, 1600, 1791, 1850, 1926
MluNI	TGGCCA	1 cut(s)	782
MlyI	GAGTC	9 cut(s)	158, 293, 550, 710, 975, 1142, 1528, 1699, 2433
Mox20I	TGGCCA	1 cut(s)	782
MroXI	GAANNNNTTC	3 cut(s)	400, 834, 1838
MscI	TGGCCA	1 cut(s)	782
MseI	TTAA	9 cut(s)	149, 680, 1062, 1218, 1410, 1806, 2385, 2400, 2420
MslI	CAYNNNNRTG	1 cut(s)	99
Msp20I	TGGCCA	1 cut(s)	782
MspA1I	CMGCKG	2 cut(s)	2108, 2141
MspCI	CTTAAG	1 cut(s)	2419
MspI	CCGG	6 cut(s)	551, 878, 1055, 1174, 1272, 1313
MspR9I	CCNGG	5 cut(s)	551, 662, 972, 1248, 1422
MunI	CAATTG	1 cut(s)	1600
Mva1269I	GAATGC	1 cut(s)	647
MvaI	CCWGG	4 cut(s)	662, 972, 1248, 1422
MvnI	CGCG	1 cut(s)	1439
MwoI	GCNNNNNNNGC	6 cut(s)	371, 465, 887, 1177, 1585, 1943
NciI	CCSGG	1 cut(s)	551
NcoI	CCATGG	1 cut(s)	1451
NdeII	GATC	8 cut(s)	279, 339, 493, 720, 913, 1015, 1323, 2368
NlaIV	GGNNCC	2 cut(s)	2063, 2289
NmuCI	GTSAC	1 cut(s)	1267
NspI	RCATGY	5 cut(s)	104, 628, 928, 1006, 1549
NspV	TTCGAA	2 cut(s)	996, 1731
PaeI	GCATGC	1 cut(s)	1549
PaeR7I	CTCGAG	1 cut(s)	180
PceI	AGGCCT	1 cut(s)	2276
PcsI	WCGNNNNNNNCGW	1 cut(s)	993
PctI	GAATGC	1 cut(s)	647
PdmI	GAANNNNTTC	3 cut(s)	400, 834, 1838
PfeI	GAWTC	6 cut(s)	498, 1885, 2003, 2377, 2430, 2458
Pfl23II	CGTACG	1 cut(s)	354
PflFI	GACNNNGTC	1 cut(s)	302
PfoI	TCCNGGA	2 cut(s)	660, 1246
PkrI	GCNGC	5 cut(s)	903, 1717, 1720, 2143, 2160
Ple19I	CGATCG	2 cut(s)	496, 1018
PleI	GAGTC	9 cut(s)	158, 293, 549, 709, 974, 1142, 1528, 1698, 2432
PpsI	GAGTC	9 cut(s)	158, 293, 549, 709, 974, 1142, 1528, 1698, 2432
Ppu21I	YACGTR	1 cut(s)	1081
PpuMI	RGGWCCY	1 cut(s)	1896
Psp5II	RGGWCCY	1 cut(s)	1896
Psp6I	CCWGG	4 cut(s)	660, 970, 1246, 1420
PspGI	CCWGG	4 cut(s)	660, 970, 1246, 1420
PspLI	CGTACG	1 cut(s)	354
PspN4I	GGNNCC	2 cut(s)	2063, 2289
PspPI	GGNCC	1 cut(s)	1896
PspPPI	RGGWCCY	1 cut(s)	1896
PstI	CTGCAG	2 cut(s)	734, 1918
PsuI	RGATCY	2 cut(s)	720, 1323
PsyI	GACNNNGTC	1 cut(s)	302
PvuI	CGATCG	2 cut(s)	496, 1018
RsaI	GTAC	3 cut(s)	356, 1649, 2063
RsaNI	GTAC	3 cut(s)	355, 1648, 2062
RseI	CAYNNNNRTG	1 cut(s)	99
SalI	GTCGAC	1 cut(s)	986
SaqAI	TTAA	9 cut(s)	149, 680, 1062, 1218, 1410, 1806, 2385, 2400, 2420
SatI	GCNGC	5 cut(s)	902, 1716, 1719, 2142, 2159
Sau3AI	GATC	8 cut(s)	279, 339, 493, 720, 913, 1015, 1323, 2368
Sau96I	GGNCC	1 cut(s)	1896
SchI	GAGTC	9 cut(s)	158, 293, 550, 710, 975, 1142, 1528, 1699, 2433
ScrFI	CCNGG	5 cut(s)	551, 662, 972, 1248, 1422
SduI	GDGCHC	1 cut(s)	624
SfaNI	GCATC	2 cut(s)	278, 1324
SfcI	CTRYAG	4 cut(s)	630, 730, 1540, 1914
Sfr274I	CTCGAG	1 cut(s)	180
SfuI	TTCGAA	2 cut(s)	996, 1731
SinI	GGWCC	1 cut(s)	1896
SlaI	CTCGAG	1 cut(s)	180
SmiMI	CAYNNNNRTG	1 cut(s)	99
SmlI	CTYRAG	3 cut(s)	180, 1619, 2419
SmoI	CTYRAG	3 cut(s)	180, 1619, 2419
SnaBI	TACGTA	1 cut(s)	1081
SpeI	ACTAGT	2 cut(s)	2083, 2408
SphI	GCATGC	1 cut(s)	1549
Sse9I	AATT	9 cut(s)	40, 600, 1107, 1355, 1407, 1600, 1791, 1850, 1926
SseBI	AGGCCT	1 cut(s)	2276
SsiI	CCGC	5 cut(s)	12, 161, 1715, 2106, 2139
StuI	AGGCCT	1 cut(s)	2276
StyD4I	CCNGG	5 cut(s)	549, 660, 970, 1246, 1420
StyI	CCWWGG	4 cut(s)	252, 1327, 1451, 1889
TaaI	ACNGT	5 cut(s)	57, 1038, 1254, 1774, 2477
TaiI	ACGT	3 cut(s)	390, 480, 1083
TasI	AATT	9 cut(s)	40, 600, 1107, 1355, 1407, 1600, 1791, 1850, 1926
TauI	GCSGC	1 cut(s)	1718
TfiI	GAWTC	6 cut(s)	498, 1885, 2003, 2377, 2430, 2458
Tru1I	TTAA	9 cut(s)	149, 680, 1062, 1218, 1410, 1806, 2385, 2400, 2420
Tru9I	TTAA	9 cut(s)	149, 680, 1062, 1218, 1410, 1806, 2385, 2400, 2420
TscAI	CASTG	4 cut(s)	163, 795, 2460, 2482
TseFI	GTSAC	1 cut(s)	1267
TseI	GCWGC	4 cut(s)	901, 1718, 2141, 2158
Tsp45I	GTSAC	1 cut(s)	1267
TspDTI	ATGAA	9 cut(s)	141, 249, 1831, 1839, 1863, 2085, 2390, 2422, 2438
TspGWI	ACGGA	2 cut(s)	292, 1112
TspRI	CASTG	4 cut(s)	163, 795, 2460, 2482
Tth111I	GACNNNGTC	1 cut(s)	302
Vha464I	CTTAAG	1 cut(s)	2419
VpaK11BI	GGWCC	1 cut(s)	1896
XapI	RAATTY	4 cut(s)	40, 1107, 1355, 1850
XceI	RCATGY	5 cut(s)	104, 628, 928, 1006, 1549
XcmI	CCANNNNNNNNNTGG	2 cut(s)	452, 956
XhoI	CTCGAG	1 cut(s)	180
XmiI	GTMKAC	2 cut(s)	884, 987
XmnI	GAANNNNTTC	3 cut(s)	400, 834, 1838
ZraI	GACGTC	2 cut(s)	388, 478

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.