Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb2

Orthogroup ID

OG0002643

Physical Location & Seq

Genomic Coordinates Forward (+)

20030239 .. 20030610

Gene Structure 372 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_2g24581.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 297 bp

ATGCTCCTCAACCTTATAGCAGCTGACTTGAGTTACCATACTCAAGGACAAGCATTTTGCCAATCAGTAGTTGATCATATTGGGATCGATATAGTTCCTGGTGATCCTCTGGATAGTAGCATGCATTCTTCTGAGGCCATGCCACTTGAGCCATATCAACGTCATGCTCATGAGTTTCTGGTCAAGACAAGGCGTCGTCGAAAGGGAATGAGTGAGGATGTCAACATATACAAGTTTTTCGACGAGGCCATGGTGATGGAATTTCCTCAGCAGGCTGCTGATCCATATGCATTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005681 GO:0005684 GO:0005730 GO:0005737 GO:0005829 GO:0005886 GO:0005911 GO:0007275 GO:0008150 GO:0009506 GO:0009790 GO:0009791 GO:0009793 GO:0009908 GO:0010154 GO:0015030 GO:0016020 GO:0016604 GO:0016607 GO:0022414 GO:0030054 GO:0030312 GO:0030532 GO:0031974 GO:0031981 GO:0032501 GO:0032502 GO:0032991 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043900 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044451 GO:0044464 GO:0045595 GO:0045694 GO:0046540 GO:0048316 GO:0048367 GO:0048437 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0051239 GO:0055044 GO:0061458 GO:0065007 GO:0070013 GO:0071007 GO:0071013 GO:0071944 GO:0090567 GO:0097525 GO:0097526 GO:0099402 GO:0120114 GO:1902494 GO:1990904 GO:2000026 GO:2000241

KEGG Pathways

Metabolic & Signaling

ko03040 map03040

Pfam Domains

Protein Families

EFG_C EFG_IV EFTUD2 GTP_EFTU GTP_EFTU_D2

Protein Analysis

99

Amino Acids

11.2

Weight (kDa)

5.14

Isoelectric Point (pI)

74.88

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002643)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G06220 AT1G06220 AT1G06220 AT5G25230 AT5G25230
fragaria_vesca	FvH4_2g24581 FvH4_7g03790 FvH4_7g03790 FvH4_7g03790
malus_domestica	MD02G1013600.v1.1 MD15G1160400.v1.1
prunus_persica	Prupe.3G036300_v2.0.a1
pyrus_communis	pycom02g01260 pycom15g14420
rosa_chinensis	RchiOBHm_Chr1g0327101 RchiOBHm_Chr1g0327121 RchiOBHm_Chr2g0127751
rosa_laevigata	RLG00000012029 RLG00000012030 RLG00000030043
rosa_multiflora	Rmu_sc0000795.1_g000050 Rmu_sc0004240.1_g000007
rosa_roxburghii	Rroxscaffold_4G00323330 Rroxscaffold_6G00399840 Rroxscaffold_6G00400180
rosa_rugosa	Rorug01G0063500
rosa_samantha	Rh1AG080100 Rh1AG080300 Rh1AG080700 Rh1AG080900 Rh1BG064100 Rh1CG078700 Rh1CG078800 Rh1DG085100 Rh1DG085200 Rh2AG323400 Rh2BG332600 Rh2DG350900
rosa_wichuraiana	Rw1G006400 Rw2G026250

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	3 cut(s)	92, 98, 275
AcsI	RAATTY	1 cut(s)	260
AcyI	GRCGYC	1 cut(s)	193
AhdI	GACNNNNNGTC	1 cut(s)	192
AjnI	CCWGG	1 cut(s)	97
AluBI	AGCT	1 cut(s)	23
AluI	AGCT	1 cut(s)	23
AlwI	GGATC	3 cut(s)	92, 98, 275
AoxI	GGCC	2 cut(s)	135, 246
ApeKI	GCWGC	2 cut(s)	20, 275
ApoI	RAATTY	1 cut(s)	260
ArsI	GACNNNNNNTTYG	2 cut(s)	39, 71
AsuHPI	GGTGA	2 cut(s)	113, 265
BbvCI	CCTCAGC	1 cut(s)	267
BbvI	GCAGC	2 cut(s)	32, 262
BccI	CCATC	1 cut(s)	250
BciT130I	CCWGG	1 cut(s)	99
BclI	TGATCA	1 cut(s)	73
BisI	GCNGC	2 cut(s)	21, 276
BlsI	GCNGC	2 cut(s)	22, 277
Bme1390I	CCNGG	1 cut(s)	99
BmeRI	GACNNNNNGTC	1 cut(s)	192
BmrFI	CCNGG	1 cut(s)	99
Bpu10I	CCTNAGC	1 cut(s)	267
BpuEI	CTTGAG	3 cut(s)	27, 49, 167
Bsa29I	ATCGAT	1 cut(s)	87
BsaHI	GRCGYC	1 cut(s)	193
BsaJI	CCNNGG	1 cut(s)	249
BseBI	CCWGG	1 cut(s)	99
BseCI	ATCGAT	1 cut(s)	87
BseDI	CCNNGG	1 cut(s)	249
BseGI	GGATG	1 cut(s)	223
BseMII	CTCAG	2 cut(s)	123, 281
BseXI	GCAGC	2 cut(s)	32, 262
BshFI	GGCC	2 cut(s)	137, 248
BshVI	ATCGAT	1 cut(s)	87
BsmI	GAATGC	1 cut(s)	124
BsnI	GGCC	2 cut(s)	137, 248
Bsp143I	GATC	4 cut(s)	73, 84, 103, 280
Bsp19I	CCATGG	1 cut(s)	249
BspANI	GGCC	2 cut(s)	137, 248
BspCNI	CTCAG	2 cut(s)	124, 280
BspDI	ATCGAT	1 cut(s)	87
BspHI	TCATGA	1 cut(s)	169
BspPI	GGATC	3 cut(s)	92, 98, 275
BssECI	CCNNGG	1 cut(s)	249
BssMI	GATC	4 cut(s)	73, 84, 103, 280
BssNI	GRCGYC	1 cut(s)	193
BssT1I	CCWWGG	1 cut(s)	249
Bst2UI	CCWGG	1 cut(s)	99
BstACI	GRCGYC	1 cut(s)	193
BstC8I	GCNNGC	2 cut(s)	122, 273
BstDEI	CTNAG	2 cut(s)	132, 267
BstDSI	CCRYGG	1 cut(s)	249
BstF5I	GGATG	1 cut(s)	223
BstKTI	GATC	4 cut(s)	76, 87, 106, 283
BstMBI	GATC	4 cut(s)	73, 84, 103, 280
BstMWI	GCNNNNNNNGC	1 cut(s)	148
BstNI	CCWGG	1 cut(s)	99
BstNSI	RCATGY	1 cut(s)	124
BstSCI	CCNGG	1 cut(s)	97
BstV1I	GCAGC	2 cut(s)	32, 262
BstXI	CCANNNNNNTGG	1 cut(s)	256
Bsu15I	ATCGAT	1 cut(s)	87
BsuRI	GGCC	2 cut(s)	137, 248
BsuTUI	ATCGAT	1 cut(s)	87
BtgI	CCRYGG	1 cut(s)	249
BtsCI	GGATG	1 cut(s)	223
Cac8I	GCNNGC	2 cut(s)	122, 273
CciI	TCATGA	1 cut(s)	169
ClaI	ATCGAT	1 cut(s)	87
CseI	GACGC	1 cut(s)	182
CviAII	CATG	5 cut(s)	121, 139, 164, 170, 250
CviJI	RGCY	5 cut(s)	23, 137, 151, 248, 275
CviKI_1	RGCY	5 cut(s)	23, 137, 151, 248, 275
DdeI	CTNAG	2 cut(s)	132, 267
DpnI	GATC	4 cut(s)	75, 86, 105, 282
DpnII	GATC	4 cut(s)	73, 84, 103, 280
DriI	GACNNNNNGTC	1 cut(s)	192
Eam1105I	GACNNNNNGTC	1 cut(s)	192
Eco130I	CCWWGG	1 cut(s)	249
EcoRII	CCWGG	1 cut(s)	97
EcoT14I	CCWWGG	1 cut(s)	249
EcoT22I	ATGCAT	2 cut(s)	126, 292
ErhI	CCWWGG	1 cut(s)	249
FaeI	CATG	5 cut(s)	124, 142, 167, 173, 253
FatI	CATG	5 cut(s)	120, 138, 163, 169, 249
FauNDI	CATATG	1 cut(s)	286
FbaI	TGATCA	1 cut(s)	73
Fnu4HI	GCNGC	2 cut(s)	21, 276
FokI	GGATG	1 cut(s)	230
Fsp4HI	GCNGC	2 cut(s)	21, 276
GluI	GCNGC	2 cut(s)	21, 276
HaeIII	GGCC	2 cut(s)	137, 248
HgaI	GACGC	1 cut(s)	182
Hin1I	GRCGYC	1 cut(s)	193
Hin1II	CATG	5 cut(s)	124, 142, 167, 173, 253
HincII	GTYRAC	1 cut(s)	223
HindII	GTYRAC	1 cut(s)	223
HphI	GGTGA	2 cut(s)	113, 265
Hpy166II	GTNNAC	1 cut(s)	223
Hpy188I	TCNGA	1 cut(s)	133
Hpy188III	TCNNGA	3 cut(s)	110, 170, 184
Hpy8I	GTNNAC	1 cut(s)	223
Hpy99I	CGWCG	3 cut(s)	198, 201, 245
HpyCH4IV	ACGT	1 cut(s)	160
HpyCH4V	TGCA	2 cut(s)	124, 290
HpyF10VI	GCNNNNNNNGC	1 cut(s)	148
HpyF3I	CTNAG	2 cut(s)	132, 267
HpySE526I	ACGT	1 cut(s)	160
Hsp92I	GRCGYC	1 cut(s)	193
Hsp92II	CATG	5 cut(s)	124, 142, 167, 173, 253
Ksp22I	TGATCA	1 cut(s)	73
Kzo9I	GATC	4 cut(s)	73, 84, 103, 280
LmnI	GCTCC	1 cut(s)	9
LpnPI	CCDG	5 cut(s)	84, 95, 111, 164, 257
Lsp1109I	GCAGC	2 cut(s)	32, 262
MaeII	ACGT	1 cut(s)	160
MaeIII	GTNAC	1 cut(s)	32
MalI	GATC	4 cut(s)	75, 86, 105, 282
MboI	GATC	4 cut(s)	73, 84, 103, 280
MboII	GAAGA	1 cut(s)	120
MluCI	AATT	1 cut(s)	260
MnlI	CCTC	6 cut(s)	17, 117, 127, 208, 238, 276
Mph1103I	ATGCAT	2 cut(s)	126, 292
MslI	CAYNNNNRTG	2 cut(s)	168, 254
MspA1I	CMGCKG	1 cut(s)	23
MspR9I	CCNGG	1 cut(s)	99
Mva1269I	GAATGC	1 cut(s)	124
MvaI	CCWGG	1 cut(s)	99
MwoI	GCNNNNNNNGC	1 cut(s)	148
NcoI	CCATGG	1 cut(s)	249
NdeI	CATATG	1 cut(s)	286
NdeII	GATC	4 cut(s)	73, 84, 103, 280
NlaIII	CATG	5 cut(s)	124, 142, 167, 173, 253
NsiI	ATGCAT	2 cut(s)	126, 292
NspI	RCATGY	1 cut(s)	124
PaeI	GCATGC	1 cut(s)	124
PagI	TCATGA	1 cut(s)	169
PctI	GAATGC	1 cut(s)	124
PkrI	GCNGC	2 cut(s)	22, 277
Psp6I	CCWGG	1 cut(s)	97
PspGI	CCWGG	1 cut(s)	97
PvuII	CAGCTG	1 cut(s)	23
RseI	CAYNNNNRTG	2 cut(s)	168, 254
SatI	GCNGC	2 cut(s)	21, 276
Sau3AI	GATC	4 cut(s)	73, 84, 103, 280
ScrFI	CCNGG	1 cut(s)	99
SetI	ASST	3 cut(s)	15, 25, 163
SmiMI	CAYNNNNRTG	2 cut(s)	168, 254
SmlI	CTYRAG	3 cut(s)	28, 42, 146
SmoI	CTYRAG	3 cut(s)	28, 42, 146
SphI	GCATGC	1 cut(s)	124
Sse9I	AATT	1 cut(s)	260
StyD4I	CCNGG	1 cut(s)	97
StyI	CCWWGG	1 cut(s)	249
TaiI	ACGT	1 cut(s)	163
TaqI	TCGA	3 cut(s)	87, 199, 240
TasI	AATT	1 cut(s)	260
TseI	GCWGC	2 cut(s)	20, 275
XapI	RAATTY	1 cut(s)	260
XceI	RCATGY	1 cut(s)	124
Zsp2I	ATGCAT	2 cut(s)	126, 292

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.