Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1D

Orthogroup ID

OG0002643

Physical Location & Seq

Genomic Coordinates Reverse (-)

15747649 .. 15751392

Gene Structure 3744 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1DG085100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1914 bp

ATGCTTTGCAAGTGCTACTGCAGGATGGTCGTTCACGTTGCAATCATTTGCAAAGCTATATATGTTAAGCTTCATGGGATCGCTTTTGACGCGGATCAGTTTACTTCTCATCTATGGGGAGATATGTGCTATCATCCTGACGACAGGGCTTTCAGGAGAAAACCCCCTGCAAGTGGAGGAGAAAGGTCGTTTGTCCAGTTTGTGCTTGAACCCCTGTATAAAATTTATAGCCAGGTGATTGGAGAACATAAAAAGAGTGTTGAGGCAACTCTTGCTGAACTTGGTGTCACCCTTAGCAATGCAGCTTACAAATTGAATGTTAGGCCTCTACTGAGGTTGGCTTGTAGCTCGGTTTTTGGATCTGCCTCGGGCTTCACTGATATGCTTGTGCAACATATTCCTTCTCCTAAAGATGCTGCAACAAGGAAAGTCGACCACACATATACTGGACCAAAAGACTCTTTGATTTACAAAACCATGAAAACTTGTGATCCCAATGGCCCGTTGATGGTAAATGTTACCAAGCTGTATCCCAAGTCCGATTGTAGCGTGTTCGATGCATTTGGTAGGGTATACAGTGGCAAGATTCAGACAGGACAGTCAGTGCGAGTATTGGGAGAAGGGTATTCACCTGACGATGAGGAGGACATGACAGTCAAAGAAGTAATGAAGCTATGGCTTTACCAAGCGCGAGATAGGATACCTATAGCTGAAGCTCCTCCTGGTACTTGGGTTCTCATCGAAGGGGTGGATGCTTCCATAATGAAAACTGCCACTCTGTGTAATGAGAGTTATGACGAGGATGTATACAGATTCTGTCCTCTTCAGTTCAATACACTGCCAGTGGTGAAAACGGCAACTGAGCCTCTAAATCCCAGTGAGTTGCCAAAAATGGTGGAGGGTCTTAGAAAGATCTGCAAGAGTTATCCTCTTGCCATAACCAAAGTTGAGGAGTCTGGGGAGCACACAATCTTAGGTACAGGAGAACTGTATTTGGATTCCATCATGAAGGACCTCAGAGAGCTCTACTCTGAAGTAGAAGTCAAGGTTGCAGATCCTGTTGTTTCATTCTGCGAAACAGTTGTGGAATCTTCATCAATGAAGTGTTTTGCTGAAACACCAAACAAGAAGAATAAAATTACTATGATTGCAGAGCCATTAGAGAGAGGACTTGCGGAGGACATTGAGAAAGGTGTTGTAAGCATTGATTGGTCTAGGAGAGATATAGGTAATTTCTTCCAGACTAGGTATGAGTGGGATGTTCTTGCTGCACGGTCCATATGGGCATTCGGTCCTGATAAGCAGGGACCCAACATACTACTTGGTGACACGCATTCAAGCGAAGTTGACAAGAGCTTGCTGAATGCTGTGAAAGGCTCCATTGTGCAAGGGTTTCAGTGGGGTGCTCGAGAAGGACCTCTGTGTGATGAACCCATCAGAAATGTTAAGTTCAAGATTGTTGATGCAAGGATTGCACCTGAGCCGTTGCATCGTGGATCTGGTCAAATCATTCCCACATCTCGACGTGTGGCCTATTCATCTTTCCTAATGGCAACCCCACGGCTCATGGAGCCAGTATATTATGTGGAGATACAAACGCCAATCGACTGTGTATCTGCAATCTACACTGTTTTATCTCGCAGGCGTGGACATGTTACAGCCGATGTTCCTCAACCCGGGACCCCAGCTTACATCGTTAAGGCATTTTTACCCGTCATAGAATCGTTTGGTTTTGAGACGGACTTGAGGTACCATACTCAAGGACAGGCTTTTTGTCTCTCAGTCTTTGATCATTGGGCTATAGTTCCTGGGGATCCTCTTGACAAGAGTATTGTTCTGCGACCACTTGAACCCGCACCGATTGAGCACTGGCTCGTGAATTTATGGTCAAGACAAGGCGTAGAAAGGGAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005681 GO:0005684 GO:0005730 GO:0005737 GO:0005829 GO:0005886 GO:0005911 GO:0007275 GO:0008150 GO:0009506 GO:0009790 GO:0009791 GO:0009793 GO:0009908 GO:0010154 GO:0015030 GO:0016020 GO:0016604 GO:0016607 GO:0022414 GO:0030054 GO:0030312 GO:0030532 GO:0031974 GO:0031981 GO:0032501 GO:0032502 GO:0032991 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043900 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044451 GO:0044464 GO:0045595 GO:0045694 GO:0046540 GO:0048316 GO:0048367 GO:0048437 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0051239 GO:0055044 GO:0061458 GO:0065007 GO:0070013 GO:0071007 GO:0071013 GO:0071944 GO:0090567 GO:0097525 GO:0097526 GO:0099402 GO:0120114 GO:1902494 GO:1990904 GO:2000026 GO:2000241

KEGG Pathways

Metabolic & Signaling

ko03040 map03040

Pfam Domains

Protein Families

EFG_C EFG_IV EFTUD2 GTP_EFTU GTP_EFTU_D2

Protein Analysis

637

Amino Acids

71.34

Weight (kDa)

6.03

Isoelectric Point (pI)

36.58

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
GTP_EFTU_D2	PF03144	187 - 261	2.4e-09	Elongation factor Tu domain 2
EFG_IV	PF03764	407 - 518	9.5e-18	Elongation factor G, domain IV
EFG_C	PF00679	521 - 609	1.8e-22	Elongation factor G C-terminus

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002643)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G06220 AT1G06220 AT1G06220 AT5G25230 AT5G25230
fragaria_vesca	FvH4_2g24581 FvH4_7g03790 FvH4_7g03790 FvH4_7g03790
malus_domestica	MD02G1013600.v1.1 MD15G1160400.v1.1
prunus_persica	Prupe.3G036300_v2.0.a1
pyrus_communis	pycom02g01260 pycom15g14420
rosa_chinensis	RchiOBHm_Chr1g0327101 RchiOBHm_Chr1g0327121 RchiOBHm_Chr2g0127751
rosa_laevigata	RLG00000012029 RLG00000012030 RLG00000030043
rosa_multiflora	Rmu_sc0000795.1_g000050 Rmu_sc0004240.1_g000007
rosa_roxburghii	Rroxscaffold_4G00323330 Rroxscaffold_6G00399840 Rroxscaffold_6G00400180
rosa_rugosa	Rorug01G0063500
rosa_samantha	Rh1AG080100 Rh1AG080300 Rh1AG080700 Rh1AG080900 Rh1BG064100 Rh1CG078700 Rh1CG078800 Rh1DG085100 Rh1DG085200 Rh2AG323400 Rh2BG332600 Rh2DG350900
rosa_wichuraiana	Rw1G006400 Rw2G026250

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	2 cut(s)	598, 653
Acc65I	GGTACC	1 cut(s)	1749
AccB1I	GGYRCC	1 cut(s)	1749
AccI	GTMKAC	3 cut(s)	432, 573, 807
AccII	CGCG	2 cut(s)	92, 691
AciI	CCGC	3 cut(s)	92, 1175, 1854
AclWI	GGATC	8 cut(s)	86, 102, 367, 485, 1049, 1504, 1808, 1821
AcsI	RAATTY	2 cut(s)	222, 1879
AcuI	CTGAAG	3 cut(s)	732, 809, 1053
AdeI	CACNNNGTG	1 cut(s)	780
AfaI	GTAC	3 cut(s)	727, 979, 1751
AfiI	CCNNNNNNNGG	3 cut(s)	173, 508, 1676
AflIII	ACRYGT	2 cut(s)	1525, 1651
AgsI	TTSAA	6 cut(s)	209, 316, 832, 1338, 1453, 1850
AjiI	CACGTC	1 cut(s)	1526
AjnI	CCWGG	3 cut(s)	231, 721, 1807
Alw21I	GWGCWC	4 cut(s)	966, 1026, 1408, 1869
Alw26I	GTCTC	2 cut(s)	1730, 1781
AlwI	GGATC	8 cut(s)	86, 102, 367, 485, 1049, 1504, 1808, 1821
AlwNI	CAGNNNCTG	2 cut(s)	816, 1058
Ama87I	CYCGRG	3 cut(s)	367, 1407, 1676
AoxI	GGCC	3 cut(s)	323, 499, 1530
ApeKI	GCWGC	3 cut(s)	302, 416, 1268
ApoI	RAATTY	2 cut(s)	222, 1879
ArsI	GACNNNNNNTTYG	2 cut(s)	1755, 1787
Asp718I	GGTACC	1 cut(s)	1749
AspLEI	GCGC	1 cut(s)	691
AspS9I	GGNCC	8 cut(s)	449, 500, 1012, 1275, 1292, 1307, 1415, 1680
AsuC2I	CCSGG	2 cut(s)	1677, 1678
AsuHPI	GGTGA	5 cut(s)	247, 280, 621, 859, 1337
AvaI	CYCGRG	3 cut(s)	367, 1407, 1676
AvaII	GGWCC	7 cut(s)	449, 1012, 1275, 1292, 1307, 1415, 1680
BaeI	ACNNNNGTAYC	2 cut(s)	717, 750
BamHI	GGATCC	1 cut(s)	1813
BanI	GGYRCC	1 cut(s)	1749
BanII	GRGCYC	1 cut(s)	1026
BauI	CACGAG	1 cut(s)	1874
Bbv12I	GWGCWC	4 cut(s)	966, 1026, 1408, 1869
BbvI	GCAGC	3 cut(s)	314, 403, 1255
BccI	CCATC	4 cut(s)	19, 502, 1010, 1442
BceAI	ACGGC	3 cut(s)	870, 1468, 1577
BcgI	CGANNNNNNTGC	2 cut(s)	10, 44
BciT130I	CCWGG	3 cut(s)	233, 723, 1809
BciVI	GTATCC	2 cut(s)	540, 693
BclI	TGATCA	1 cut(s)	1789
BcnI	CCSGG	2 cut(s)	1677, 1678
BcoDI	GTCTC	2 cut(s)	1730, 1781
BfaI	CTAG	2 cut(s)	1215, 1245
BfmI	CTRYAG	3 cut(s)	19, 705, 1800
BfuI	GTATCC	2 cut(s)	540, 693
BglII	AGATCT	1 cut(s)	912
BisI	GCNGC	3 cut(s)	303, 417, 1269
BlsI	GCNGC	3 cut(s)	304, 418, 1270
Bme1390I	CCNGG	5 cut(s)	233, 723, 1677, 1678, 1809
Bme18I	GGWCC	7 cut(s)	449, 1012, 1275, 1292, 1307, 1415, 1680
BmeT110I	CYCGRG	3 cut(s)	367, 1407, 1676
BmgBI	CACGTC	1 cut(s)	1526
BmgT120I	GGNCC	8 cut(s)	449, 500, 1012, 1275, 1292, 1307, 1415, 1680
BmiI	GGNNCC	8 cut(s)	1308, 1309, 1378, 1572, 1681, 1682, 1751, 1815
BmrFI	CCNGG	5 cut(s)	233, 723, 1677, 1678, 1809
BmrI	ACTGGG	1 cut(s)	870
BmsI	GCATC	5 cut(s)	403, 547, 742, 1453, 1498
BmuI	ACTGGG	1 cut(s)	870
BplI	GAGNNNNNCTC	4 cut(s)	913, 945, 1013, 1045
Bpu10I	CCTNAGC	2 cut(s)	293, 1479
BpuEI	CTTGAG	2 cut(s)	1743, 1765
BpuMI	CCSGG	2 cut(s)	1677, 1678
BsaJI	CCNNGG	4 cut(s)	366, 1559, 1676, 1808
Bsc4I	CCNNNNNNNGG	3 cut(s)	173, 508, 1676
Bse1I	ACTGG	6 cut(s)	196, 451, 842, 876, 1574, 1874
Bse3DI	GCAATG	1 cut(s)	304
BseBI	CCWGG	3 cut(s)	233, 723, 1809
BseDI	CCNNGG	4 cut(s)	366, 1559, 1676, 1808
BseGI	GGATG	5 cut(s)	30, 133, 757, 808, 1264
BseLI	CCNNNNNNNGG	3 cut(s)	173, 508, 1676
BseMI	GCAATG	1 cut(s)	304
BseMII	CTCAG	5 cut(s)	323, 852, 1030, 1470, 1794
BseNI	ACTGG	6 cut(s)	196, 451, 842, 876, 1574, 1874
BseRI	GAGGAG	4 cut(s)	192, 656, 708, 965
BseXI	GCAGC	3 cut(s)	314, 403, 1255
BseYI	CCCAGC	1 cut(s)	1684
BsgI	GTGCAG	1 cut(s)	1254
Bsh1236I	CGCG	2 cut(s)	92, 691
BshFI	GGCC	3 cut(s)	325, 501, 1532
BshNI	GGYRCC	1 cut(s)	1749
BsiHKAI	GWGCWC	4 cut(s)	966, 1026, 1408, 1869
BsiHKCI	CYCGRG	3 cut(s)	367, 1407, 1676
BsiSI	CCGG	1 cut(s)	1677
BslFI	GGGAC	2 cut(s)	1320, 1693
BslI	CCNNNNNNNGG	3 cut(s)	173, 508, 1676
BsmAI	GTCTC	2 cut(s)	1730, 1781
BsmBI	CGTCTC	1 cut(s)	1730
BsmFI	GGGAC	2 cut(s)	1320, 1693
BsmI	GAATGC	3 cut(s)	1286, 1333, 1369
BsnI	GGCC	3 cut(s)	325, 501, 1532
BsoBI	CYCGRG	3 cut(s)	367, 1407, 1676
Bsp1286I	GDGCHC	4 cut(s)	966, 1026, 1408, 1869
Bsp143I	GATC	9 cut(s)	78, 94, 359, 490, 912, 1054, 1496, 1789, 1813
BspACI	CCGC	3 cut(s)	92, 1175, 1854
BspANI	GGCC	3 cut(s)	325, 501, 1532
BspCNI	CTCAG	5 cut(s)	324, 853, 1029, 1471, 1793
BspFNI	CGCG	2 cut(s)	92, 691
BspHI	TCATGA	1 cut(s)	1005
BspLI	GGNNCC	8 cut(s)	1308, 1309, 1378, 1572, 1681, 1682, 1751, 1815
BspMAI	CTGCAG	1 cut(s)	23
BspPI	GGATC	8 cut(s)	86, 102, 367, 485, 1049, 1504, 1808, 1821
BspT107I	GGYRCC	1 cut(s)	1749
BsrDI	GCAATG	1 cut(s)	304
BsrI	ACTGG	6 cut(s)	196, 451, 842, 876, 1574, 1874
BssECI	CCNNGG	4 cut(s)	366, 1559, 1676, 1808
BssMI	GATC	9 cut(s)	78, 94, 359, 490, 912, 1054, 1496, 1789, 1813
BssNAI	GTATAC	2 cut(s)	574, 808
BssSI	CACGAG	1 cut(s)	1874
Bst1107I	GTATAC	2 cut(s)	574, 808
Bst2BI	CACGAG	1 cut(s)	1874
Bst2UI	CCWGG	3 cut(s)	233, 723, 1809
Bst4CI	ACNGT	8 cut(s)	578, 600, 655, 990, 1081, 1275, 1610, 1630
Bst6I	CTCTTC	1 cut(s)	828
BstAPI	GCANNNNNTGC	2 cut(s)	272, 1472
BstC8I	GCNNGC	2 cut(s)	1358, 1643
BstDEI	CTNAG	8 cut(s)	293, 332, 861, 905, 973, 1016, 1479, 1780
BstDSI	CCRYGG	1 cut(s)	1559
BstF5I	GGATG	5 cut(s)	30, 133, 757, 808, 1264
BstFNI	CGCG	2 cut(s)	92, 691
BstHHI	GCGC	1 cut(s)	691
BstKTI	GATC	9 cut(s)	81, 97, 362, 493, 915, 1057, 1499, 1792, 1816
BstMAI	GTCTC	2 cut(s)	1730, 1781
BstMBI	GATC	9 cut(s)	78, 94, 359, 490, 912, 1054, 1496, 1789, 1813
BstMWI	GCNNNNNNNGC	4 cut(s)	89, 272, 1472, 1570
BstNI	CCWGG	3 cut(s)	233, 723, 1809
BstNSI	RCATGY	1 cut(s)	1655
BstSCI	CCNGG	5 cut(s)	231, 721, 1675, 1676, 1807
BstSFI	CTRYAG	3 cut(s)	19, 705, 1800
BstUI	CGCG	2 cut(s)	92, 691
BstV1I	GCAGC	3 cut(s)	314, 403, 1255
BstX2I	RGATCY	5 cut(s)	359, 912, 1054, 1496, 1813
BstXI	CCANNNNNNTGG	1 cut(s)	239
BstYI	RGATCY	5 cut(s)	359, 912, 1054, 1496, 1813
BstZ17I	GTATAC	2 cut(s)	574, 808
BsuI	GTATCC	2 cut(s)	540, 693
BsuRI	GGCC	3 cut(s)	325, 501, 1532
BtgI	CCRYGG	1 cut(s)	1559
BtrI	CACGTC	1 cut(s)	1526
BtsCI	GGATG	5 cut(s)	30, 133, 757, 808, 1264
BtsI	GCAGTG	1 cut(s)	836
BtsIMutI	CAGTG	9 cut(s)	375, 583, 609, 836, 849, 883, 1403, 1626, 1867
Cac8I	GCNNGC	2 cut(s)	1358, 1643
CaiI	CAGNNNCTG	2 cut(s)	816, 1058
CciI	TCATGA	1 cut(s)	1005
CfoI	GCGC	1 cut(s)	691
Cfr13I	GGNCC	8 cut(s)	449, 500, 1012, 1275, 1292, 1307, 1415, 1680
Cfr9I	CCCGGG	1 cut(s)	1676
CseI	GACGC	1 cut(s)	98
Csp6I	GTAC	3 cut(s)	726, 978, 1750
CspCI	CAANNNNNGTGG	2 cut(s)	876, 911
CviAII	CATG	6 cut(s)	74, 478, 649, 1006, 1567, 1652
CviQI	GTAC	3 cut(s)	726, 978, 1750
DdeI	CTNAG	8 cut(s)	293, 332, 861, 905, 973, 1016, 1479, 1780
DpnI	GATC	9 cut(s)	80, 96, 361, 492, 914, 1056, 1498, 1791, 1815
DpnII	GATC	9 cut(s)	78, 94, 359, 490, 912, 1054, 1496, 1789, 1813
DraIII	CACNNNGTG	1 cut(s)	780
DrdI	GACNNNNNNGTC	2 cut(s)	598, 653
DseDI	GACNNNNNNGTC	2 cut(s)	598, 653
Eam1104I	CTCTTC	1 cut(s)	828
EarI	CTCTTC	1 cut(s)	828
Ecl136II	GAGCTC	1 cut(s)	1024
Eco147I	AGGCCT	1 cut(s)	325
Eco24I	GRGCYC	1 cut(s)	1026
Eco47I	GGWCC	7 cut(s)	449, 1012, 1275, 1292, 1307, 1415, 1680
Eco53kI	GAGCTC	1 cut(s)	1024
Eco57I	CTGAAG	3 cut(s)	732, 809, 1053
Eco88I	CYCGRG	3 cut(s)	367, 1407, 1676
EcoICRI	GAGCTC	1 cut(s)	1024
EcoO109I	RGGNCCY	4 cut(s)	1012, 1307, 1415, 1680
EcoRII	CCWGG	3 cut(s)	231, 721, 1807
EcoT22I	ATGCAT	1 cut(s)	562
EcoT38I	GRGCYC	1 cut(s)	1026
Esp3I	CGTCTC	1 cut(s)	1730
FaeI	CATG	6 cut(s)	77, 481, 652, 1009, 1570, 1655
FaqI	GGGAC	2 cut(s)	1320, 1693
FatI	CATG	6 cut(s)	73, 477, 648, 1005, 1566, 1651
FauI	CCCGC	1 cut(s)	1861
FauNDI	CATATG	1 cut(s)	1280
FbaI	TGATCA	1 cut(s)	1789
FblI	GTMKAC	3 cut(s)	432, 573, 807
Fnu4HI	GCNGC	3 cut(s)	303, 417, 1269
FokI	GGATG	5 cut(s)	37, 120, 764, 815, 1271
FriOI	GRGCYC	1 cut(s)	1026
Fsp4HI	GCNGC	3 cut(s)	303, 417, 1269
FspBI	CTAG	2 cut(s)	1215, 1245
GlaI	GCGC	1 cut(s)	690
GluI	GCNGC	3 cut(s)	303, 417, 1269
GsaI	CCCAGC	1 cut(s)	1688
HaeIII	GGCC	3 cut(s)	325, 501, 1532
HapII	CCGG	1 cut(s)	1677
HgaI	GACGC	1 cut(s)	98
HhaI	GCGC	1 cut(s)	691
Hin1II	CATG	6 cut(s)	77, 481, 652, 1009, 1570, 1655
Hin6I	GCGC	1 cut(s)	689
HinP1I	GCGC	1 cut(s)	689
HincII	GTYRAC	2 cut(s)	433, 1348
HindII	GTYRAC	2 cut(s)	433, 1348
HindIII	AAGCTT	1 cut(s)	68
HinfI	GANTC	7 cut(s)	458, 586, 813, 953, 998, 1088, 1721
HpaII	CCGG	1 cut(s)	1677
HphI	GGTGA	5 cut(s)	247, 280, 621, 859, 1337
Hpy166II	GTNNAC	7 cut(s)	34, 102, 433, 574, 808, 1348, 1649
Hpy188I	TCNGA	5 cut(s)	541, 591, 1019, 1033, 1439
Hpy8I	GTNNAC	7 cut(s)	34, 102, 433, 574, 808, 1348, 1649
Hpy99I	CGWCG	1 cut(s)	1527
HpyAV	CCTTC	5 cut(s)	411, 614, 737, 1003, 1406
HpyCH4III	ACNGT	8 cut(s)	578, 600, 655, 990, 1081, 1275, 1610, 1630
HpyCH4IV	ACGT	2 cut(s)	36, 1525
HpyF10VI	GCNNNNNNNGC	4 cut(s)	89, 272, 1472, 1570
HpyF3I	CTNAG	8 cut(s)	293, 332, 861, 905, 973, 1016, 1479, 1780
HpySE526I	ACGT	2 cut(s)	36, 1525
Hsp92II	CATG	6 cut(s)	77, 481, 652, 1009, 1570, 1655
HspAI	GCGC	1 cut(s)	689
KflI	GGGWCCC	2 cut(s)	1307, 1680
KpnI	GGTACC	1 cut(s)	1753
Ksp22I	TGATCA	1 cut(s)	1789
Kzo9I	GATC	9 cut(s)	78, 94, 359, 490, 912, 1054, 1496, 1789, 1813
LmnI	GCTCC	4 cut(s)	721, 961, 1382, 1570
Lsp1109I	GCAGC	3 cut(s)	314, 403, 1255
LweI	GCATC	5 cut(s)	403, 547, 742, 1453, 1498
MaeI	CTAG	2 cut(s)	1215, 1245
MaeII	ACGT	2 cut(s)	36, 1525
MaeIII	GTNAC	4 cut(s)	286, 517, 1325, 1654
MalI	GATC	9 cut(s)	80, 96, 361, 492, 914, 1056, 1498, 1791, 1815
MboI	GATC	9 cut(s)	78, 94, 359, 490, 912, 1054, 1496, 1789, 1813
MboII	GAAGA	4 cut(s)	815, 1083, 1141, 1228
MflI	RGATCY	5 cut(s)	359, 912, 1054, 1496, 1813
MhlI	GDGCHC	4 cut(s)	966, 1026, 1408, 1869
MluCI	AATT	5 cut(s)	222, 311, 1137, 1231, 1879
MlyI	GAGTC	2 cut(s)	452, 962
Mph1103I	ATGCAT	1 cut(s)	562
MseI	TTAA	3 cut(s)	66, 1446, 1698
MslI	CAYNNNNRTG	1 cut(s)	380
MspI	CCGG	1 cut(s)	1677
MspR9I	CCNGG	5 cut(s)	233, 723, 1677, 1678, 1809
Mva1269I	GAATGC	3 cut(s)	1286, 1333, 1369
MvaI	CCWGG	3 cut(s)	233, 723, 1809
MvnI	CGCG	2 cut(s)	92, 691
MwoI	GCNNNNNNNGC	4 cut(s)	89, 272, 1472, 1570
NciI	CCSGG	2 cut(s)	1677, 1678
NdeI	CATATG	1 cut(s)	1280
NdeII	GATC	9 cut(s)	78, 94, 359, 490, 912, 1054, 1496, 1789, 1813
NlaIII	CATG	6 cut(s)	77, 481, 652, 1009, 1570, 1655
NlaIV	GGNNCC	8 cut(s)	1308, 1309, 1378, 1572, 1681, 1682, 1751, 1815
NmuCI	GTSAC	2 cut(s)	286, 1325
NsiI	ATGCAT	1 cut(s)	562
NspI	RCATGY	1 cut(s)	1655
PaeR7I	CTCGAG	1 cut(s)	1407
PagI	TCATGA	1 cut(s)	1005
PceI	AGGCCT	1 cut(s)	325
PciI	ACATGT	1 cut(s)	1651
PctI	GAATGC	3 cut(s)	1286, 1333, 1369
PfeI	GAWTC	5 cut(s)	586, 813, 998, 1088, 1721
PkrI	GCNGC	3 cut(s)	304, 418, 1270
PleI	GAGTC	2 cut(s)	452, 961
PpsI	GAGTC	2 cut(s)	452, 961
PpuMI	RGGWCCY	4 cut(s)	1012, 1307, 1415, 1680
PscI	ACATGT	1 cut(s)	1651
Psp124BI	GAGCTC	1 cut(s)	1026
Psp5II	RGGWCCY	4 cut(s)	1012, 1307, 1415, 1680
Psp6I	CCWGG	3 cut(s)	231, 721, 1807
PspFI	CCCAGC	1 cut(s)	1684
PspGI	CCWGG	3 cut(s)	231, 721, 1807
PspN4I	GGNNCC	8 cut(s)	1308, 1309, 1378, 1572, 1681, 1682, 1751, 1815
PspPI	GGNCC	8 cut(s)	449, 500, 1012, 1275, 1292, 1307, 1415, 1680
PspPPI	RGGWCCY	4 cut(s)	1012, 1307, 1415, 1680
PstI	CTGCAG	1 cut(s)	23
PstNI	CAGNNNCTG	2 cut(s)	816, 1058
PsuI	RGATCY	5 cut(s)	359, 912, 1054, 1496, 1813
RsaI	GTAC	3 cut(s)	727, 979, 1751
RsaNI	GTAC	3 cut(s)	726, 978, 1750
RseI	CAYNNNNRTG	1 cut(s)	380
SacI	GAGCTC	1 cut(s)	1026
SalI	GTCGAC	1 cut(s)	431
SaqAI	TTAA	3 cut(s)	66, 1446, 1698
SatI	GCNGC	3 cut(s)	303, 417, 1269
Sau3AI	GATC	9 cut(s)	78, 94, 359, 490, 912, 1054, 1496, 1789, 1813
Sau96I	GGNCC	8 cut(s)	449, 500, 1012, 1275, 1292, 1307, 1415, 1680
SchI	GAGTC	2 cut(s)	452, 962
ScrFI	CCNGG	5 cut(s)	233, 723, 1677, 1678, 1809
SduI	GDGCHC	4 cut(s)	966, 1026, 1408, 1869
SfaNI	GCATC	5 cut(s)	403, 547, 742, 1453, 1498
SfcI	CTRYAG	3 cut(s)	19, 705, 1800
Sfr274I	CTCGAG	1 cut(s)	1407
SinI	GGWCC	7 cut(s)	449, 1012, 1275, 1292, 1307, 1415, 1680
SlaI	CTCGAG	1 cut(s)	1407
SmaI	CCCGGG	1 cut(s)	1678
SmiMI	CAYNNNNRTG	1 cut(s)	380
SmlI	CTYRAG	3 cut(s)	1407, 1744, 1758
SmoI	CTYRAG	3 cut(s)	1407, 1744, 1758
Sse9I	AATT	5 cut(s)	222, 311, 1137, 1231, 1879
SseBI	AGGCCT	1 cut(s)	325
SsiI	CCGC	3 cut(s)	92, 1175, 1854
SspMI	CTAG	2 cut(s)	1215, 1245
SstI	GAGCTC	1 cut(s)	1026
StuI	AGGCCT	1 cut(s)	325
StyD4I	CCNGG	5 cut(s)	231, 721, 1675, 1676, 1807
TaaI	ACNGT	8 cut(s)	578, 600, 655, 990, 1081, 1275, 1610, 1630
TaiI	ACGT	2 cut(s)	39, 1528
TaqI	TCGA	6 cut(s)	432, 555, 741, 1408, 1522, 1605
TaqII	GACCGA	1 cut(s)	1280
TasI	AATT	5 cut(s)	222, 311, 1137, 1231, 1879
TfiI	GAWTC	5 cut(s)	586, 813, 998, 1088, 1721
Tru1I	TTAA	3 cut(s)	66, 1446, 1698
Tru9I	TTAA	3 cut(s)	66, 1446, 1698
TscAI	CASTG	9 cut(s)	382, 583, 609, 843, 849, 883, 1403, 1633, 1874
TseFI	GTSAC	2 cut(s)	286, 1325
TseI	GCWGC	3 cut(s)	302, 416, 1268
Tsp45I	GTSAC	2 cut(s)	286, 1325
TspGWI	ACGGA	1 cut(s)	1754
TspMI	CCCGGG	1 cut(s)	1676
TspRI	CASTG	9 cut(s)	382, 583, 609, 843, 849, 883, 1403, 1633, 1874
VpaK11BI	GGWCC	7 cut(s)	449, 1012, 1275, 1292, 1307, 1415, 1680
XapI	RAATTY	2 cut(s)	222, 1879
XceI	RCATGY	1 cut(s)	1655
XcmI	CCANNNNNNNNNTGG	1 cut(s)	443
XhoI	CTCGAG	1 cut(s)	1407
XmaI	CCCGGG	1 cut(s)	1676
XmiI	GTMKAC	3 cut(s)	432, 573, 807
XspI	CTAG	2 cut(s)	1215, 1245
Zsp2I	ATGCAT	1 cut(s)	562

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.