Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr3

Orthogroup ID

OG0002643

Physical Location & Seq

Genomic Coordinates Reverse (-)

14672969 .. 14673826

Gene Structure 858 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000012030

Sequence Viewer

CDS Protein Promoter (2k)

Length: 687 bp

ATGTCGAGGACAACCTATATGACGAGTTTGGCAACTATATATATAGGCCCTGAAATTGAGTCTGACCGAGAGAGTAATATTGATGGAGATTATGGAGAAGATGAAGAGCTCGAAGCCGCTTCTGATGGTGATGATGCATCTGTTGCTTTCAGTGATGTTGACATGGAAGGCCAGATTGTTCTTGGTGAGGAGAAAAAGTATTATCCTACAGCCGAAGAGGTTTATGGTGAAGATGTTGAGACGACTTTGGTCATGGATGATGAAGATGCACAACCTCTTGATGAGCACCCCATTATCAAGCCCCATTACCTCAACAAGTACTCTGAGGTTGGTGTCAAGGATTCTTCGGCAACCTATGTTGAAACCCAGTTCCTTGTGGATCTCATGTCGAATCCTCAGTTCCTATGTCGCTTGTGCTTGAGCATAGCAATTCGAAATCCTATCTTTGTAACATCATGGACACGCCCGGTCGATCATGTTAACTTCTCTGATGAAGTGACTGCTGCTCTCAGGCTTGCTGATGGTGTTATCTTGGTTGTGGATGCTGCAGAAGGAGTGATGGTGAATACAGAGAGGTCTATATGCCGCGCAGTCCAAGAGCACCTACCTATTGTTGTTGTAATCAACAAGGTTGAGAGGTTGATAACAGAACTCAAGTTGCCTCCAAGGGATGCTTACTTAAGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005681 GO:0005684 GO:0005730 GO:0005737 GO:0005829 GO:0005886 GO:0005911 GO:0007275 GO:0008150 GO:0009506 GO:0009790 GO:0009791 GO:0009793 GO:0009908 GO:0010154 GO:0015030 GO:0016020 GO:0016604 GO:0016607 GO:0022414 GO:0030054 GO:0030312 GO:0030532 GO:0031974 GO:0031981 GO:0032501 GO:0032502 GO:0032991 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043900 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044451 GO:0044464 GO:0045595 GO:0045694 GO:0046540 GO:0048316 GO:0048367 GO:0048437 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0051239 GO:0055044 GO:0061458 GO:0065007 GO:0070013 GO:0071007 GO:0071013 GO:0071944 GO:0090567 GO:0097525 GO:0097526 GO:0099402 GO:0120114 GO:1902494 GO:1990904 GO:2000026 GO:2000241

KEGG Pathways

Metabolic & Signaling

ko03040 map03040

Pfam Domains

Protein Families

EFG_C EFG_IV EFTUD2 GTP_EFTU GTP_EFTU_D2

Protein Analysis

229

Amino Acids

25.44

Weight (kDa)

4.21

Isoelectric Point (pI)

38.23

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
EFTUD2	PF16004	14 - 107	1.4e-16	116 kDa U5 small nuclear ribonucleoprotein component N-terminus
GTP_EFTU	PF00009	159 - 219	6.2e-16	Elongation factor Tu GTP binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002643)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G06220 AT1G06220 AT1G06220 AT5G25230 AT5G25230
fragaria_vesca	FvH4_2g24581 FvH4_7g03790 FvH4_7g03790 FvH4_7g03790
malus_domestica	MD02G1013600.v1.1 MD15G1160400.v1.1
prunus_persica	Prupe.3G036300_v2.0.a1
pyrus_communis	pycom02g01260 pycom15g14420
rosa_chinensis	RchiOBHm_Chr1g0327101 RchiOBHm_Chr1g0327121 RchiOBHm_Chr2g0127751
rosa_laevigata	RLG00000012029 RLG00000012030 RLG00000030043
rosa_multiflora	Rmu_sc0000795.1_g000050 Rmu_sc0004240.1_g000007
rosa_roxburghii	Rroxscaffold_4G00323330 Rroxscaffold_6G00399840 Rroxscaffold_6G00400180
rosa_rugosa	Rorug01G0063500
rosa_samantha	Rh1AG080100 Rh1AG080300 Rh1AG080700 Rh1AG080900 Rh1BG064100 Rh1CG078700 Rh1CG078800 Rh1DG085100 Rh1DG085200 Rh2AG323400 Rh2BG332600 Rh2DG350900
rosa_wichuraiana	Rw1G006400 Rw2G026250

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	588
AciI	CCGC	2 cut(s)	117, 586
AclWI	GGATC	1 cut(s)	387
AfaI	GTAC	1 cut(s)	320
AflII	CTTAAG	1 cut(s)	679
AgsI	TTSAA	1 cut(s)	362
AluBI	AGCT	1 cut(s)	109
AluI	AGCT	1 cut(s)	109
Alw21I	GWGCWC	3 cut(s)	111, 288, 603
Alw26I	GTCTC	1 cut(s)	233
AlwI	GGATC	1 cut(s)	387
AoxI	GGCC	2 cut(s)	46, 169
ApeKI	GCWGC	2 cut(s)	503, 545
AspLEI	GCGC	1 cut(s)	590
AspS9I	GGNCC	1 cut(s)	47
AsuC2I	CCSGG	1 cut(s)	467
AsuHPI	GGTGA	4 cut(s)	140, 197, 239, 574
AsuII	TTCGAA	1 cut(s)	433
BanII	GRGCYC	1 cut(s)	111
Bbv12I	GWGCWC	3 cut(s)	111, 288, 603
BbvI	GCAGC	2 cut(s)	490, 532
BccI	CCATC	4 cut(s)	77, 119, 515, 553
BcnI	CCSGG	1 cut(s)	467
BcoDI	GTCTC	1 cut(s)	233
BfmI	CTRYAG	2 cut(s)	207, 546
BfrI	CTTAAG	1 cut(s)	679
BisI	GCNGC	4 cut(s)	117, 504, 546, 586
BlsI	GCNGC	4 cut(s)	118, 505, 547, 587
BmcAI	AGTACT	1 cut(s)	320
Bme1390I	CCNGG	1 cut(s)	467
BmgT120I	GGNCC	1 cut(s)	47
BmrFI	CCNGG	1 cut(s)	467
BmrI	ACTGGG	1 cut(s)	361
BmsI	GCATC	5 cut(s)	124, 146, 256, 532, 661
BmuI	ACTGGG	1 cut(s)	361
BoxI	GACNNNNGTC	1 cut(s)	248
Bpu14I	TTCGAA	1 cut(s)	433
BpuEI	CTTGAG	2 cut(s)	439, 638
BpuMI	CCSGG	1 cut(s)	467
BsaJI	CCNNGG	1 cut(s)	665
BsaXI	ACNNNNNCTCC	4 cut(s)	182, 212, 546, 576
Bse1I	ACTGG	1 cut(s)	367
BseDI	CCNNGG	1 cut(s)	665
BseGI	GGATG	3 cut(s)	262, 547, 676
BseMII	CTCAG	3 cut(s)	315, 410, 523
BseNI	ACTGG	1 cut(s)	367
BseRI	GAGGAG	1 cut(s)	203
BseXI	GCAGC	2 cut(s)	490, 532
Bsh1236I	CGCG	1 cut(s)	588
Bsh1285I	CGRYCG	1 cut(s)	471
BshFI	GGCC	2 cut(s)	48, 171
BsiEI	CGRYCG	1 cut(s)	471
BsiHKAI	GWGCWC	3 cut(s)	111, 288, 603
BsiSI	CCGG	1 cut(s)	467
BsmAI	GTCTC	1 cut(s)	233
BsmBI	CGTCTC	1 cut(s)	233
BsnI	GGCC	2 cut(s)	48, 171
Bsp119I	TTCGAA	1 cut(s)	433
Bsp1286I	GDGCHC	3 cut(s)	111, 288, 603
Bsp143I	GATC	2 cut(s)	379, 472
BspACI	CCGC	2 cut(s)	117, 586
BspANI	GGCC	2 cut(s)	48, 171
BspCNI	CTCAG	3 cut(s)	316, 409, 522
BspFNI	CGCG	1 cut(s)	588
BspMAI	CTGCAG	1 cut(s)	550
BspPI	GGATC	1 cut(s)	387
BspQI	GCTCTTC	1 cut(s)	99
BspT104I	TTCGAA	1 cut(s)	433
BspTI	CTTAAG	1 cut(s)	679
BsrI	ACTGG	1 cut(s)	367
BssECI	CCNNGG	1 cut(s)	665
BssMI	GATC	2 cut(s)	379, 472
BssT1I	CCWWGG	1 cut(s)	665
Bst6I	CTCTTC	2 cut(s)	99, 210
BstAFI	CTTAAG	1 cut(s)	679
BstAPI	GCANNNNNTGC	1 cut(s)	143
BstBI	TTCGAA	1 cut(s)	433
BstC8I	GCNNGC	1 cut(s)	516
BstDEI	CTNAG	3 cut(s)	324, 396, 509
BstF5I	GGATG	3 cut(s)	262, 547, 676
BstFNI	CGCG	1 cut(s)	588
BstHHI	GCGC	1 cut(s)	590
BstKTI	GATC	2 cut(s)	382, 475
BstMAI	GTCTC	1 cut(s)	233
BstMBI	GATC	2 cut(s)	379, 472
BstMCI	CGRYCG	1 cut(s)	471
BstMWI	GCNNNNNNNGC	1 cut(s)	143
BstPAI	GACNNNNGTC	1 cut(s)	248
BstSCI	CCNGG	1 cut(s)	465
BstSFI	CTRYAG	2 cut(s)	207, 546
BstUI	CGCG	1 cut(s)	588
BstV1I	GCAGC	2 cut(s)	490, 532
BstX2I	RGATCY	1 cut(s)	379
BstYI	RGATCY	1 cut(s)	379
BsuRI	GGCC	2 cut(s)	48, 171
BtsCI	GGATG	3 cut(s)	262, 547, 676
BtsIMutI	CAGTG	1 cut(s)	157
Cac8I	GCNNGC	1 cut(s)	516
CfoI	GCGC	1 cut(s)	590
Cfr13I	GGNCC	1 cut(s)	47
Csp6I	GTAC	1 cut(s)	319
CviAII	CATG	5 cut(s)	163, 253, 385, 456, 476
CviJI	RGCY	7 cut(s)	48, 109, 116, 171, 212, 301, 514
CviKI_1	RGCY	7 cut(s)	48, 109, 116, 171, 212, 301, 514
CviQI	GTAC	1 cut(s)	319
DdeI	CTNAG	3 cut(s)	324, 396, 509
DpnI	GATC	2 cut(s)	381, 474
DpnII	GATC	2 cut(s)	379, 472
Eam1104I	CTCTTC	2 cut(s)	99, 210
EarI	CTCTTC	2 cut(s)	99, 210
Ecl136II	GAGCTC	1 cut(s)	109
Eco130I	CCWWGG	1 cut(s)	665
Eco24I	GRGCYC	1 cut(s)	111
Eco53kI	GAGCTC	1 cut(s)	109
EcoICRI	GAGCTC	1 cut(s)	109
EcoO109I	RGGNCCY	1 cut(s)	47
EcoT14I	CCWWGG	1 cut(s)	665
EcoT22I	ATGCAT	1 cut(s)	139
EcoT38I	GRGCYC	1 cut(s)	111
ErhI	CCWWGG	1 cut(s)	665
Esp3I	CGTCTC	1 cut(s)	233
FaeI	CATG	5 cut(s)	166, 256, 388, 459, 479
FalI	AAGNNNNNCTT	1 cut(s)	658
FatI	CATG	5 cut(s)	162, 252, 384, 455, 475
Fnu4HI	GCNGC	4 cut(s)	117, 504, 546, 586
FokI	GGATG	3 cut(s)	269, 554, 683
FriOI	GRGCYC	1 cut(s)	111
Fsp4HI	GCNGC	4 cut(s)	117, 504, 546, 586
GlaI	GCGC	1 cut(s)	589
GluI	GCNGC	4 cut(s)	117, 504, 546, 586
HaeIII	GGCC	2 cut(s)	48, 171
HapII	CCGG	1 cut(s)	467
HhaI	GCGC	1 cut(s)	590
Hin1II	CATG	5 cut(s)	166, 256, 388, 459, 479
Hin6I	GCGC	1 cut(s)	588
HinP1I	GCGC	1 cut(s)	588
HincII	GTYRAC	2 cut(s)	160, 481
HindII	GTYRAC	2 cut(s)	160, 481
HinfI	GANTC	3 cut(s)	59, 341, 391
HpaI	GTTAAC	1 cut(s)	481
HpaII	CCGG	1 cut(s)	467
HphI	GGTGA	4 cut(s)	140, 197, 239, 574
Hpy166II	GTNNAC	2 cut(s)	160, 481
Hpy188I	TCNGA	4 cut(s)	64, 124, 325, 490
Hpy188III	TCNNGA	1 cut(s)	278
Hpy8I	GTNNAC	2 cut(s)	160, 481
HpyAV	CCTTC	2 cut(s)	161, 545
HpyCH4V	TGCA	3 cut(s)	137, 269, 548
HpyF10VI	GCNNNNNNNGC	1 cut(s)	143
HpyF3I	CTNAG	3 cut(s)	324, 396, 509
Hsp92II	CATG	5 cut(s)	166, 256, 388, 459, 479
HspAI	GCGC	1 cut(s)	588
KspAI	GTTAAC	1 cut(s)	481
Kzo9I	GATC	2 cut(s)	379, 472
LguI	GCTCTTC	1 cut(s)	99
LpnPI	CCDG	5 cut(s)	63, 185, 380, 480, 496
Lsp1109I	GCAGC	2 cut(s)	490, 532
LweI	GCATC	5 cut(s)	124, 146, 256, 532, 661
MaeIII	GTNAC	2 cut(s)	448, 496
MalI	GATC	2 cut(s)	381, 474
MboI	GATC	2 cut(s)	379, 472
MboII	GAAGA	6 cut(s)	110, 116, 227, 242, 275, 336
MflI	RGATCY	1 cut(s)	379
MhlI	GDGCHC	3 cut(s)	111, 288, 603
MluCI	AATT	2 cut(s)	54, 429
MlyI	GAGTC	1 cut(s)	68
MnlI	CCTC	9 cut(s)	181, 211, 285, 319, 320, 405, 567, 630, 672
Mph1103I	ATGCAT	1 cut(s)	139
MseI	TTAA	2 cut(s)	480, 680
MspCI	CTTAAG	1 cut(s)	679
MspI	CCGG	1 cut(s)	467
MspR9I	CCNGG	1 cut(s)	467
MvnI	CGCG	1 cut(s)	588
MwoI	GCNNNNNNNGC	1 cut(s)	143
NciI	CCSGG	1 cut(s)	467
NdeII	GATC	2 cut(s)	379, 472
NlaIII	CATG	5 cut(s)	166, 256, 388, 459, 479
NmuCI	GTSAC	1 cut(s)	496
NsiI	ATGCAT	1 cut(s)	139
NspV	TTCGAA	1 cut(s)	433
PciSI	GCTCTTC	1 cut(s)	99
PfeI	GAWTC	2 cut(s)	341, 391
PkrI	GCNGC	4 cut(s)	118, 505, 547, 587
PleI	GAGTC	1 cut(s)	67
PpsI	GAGTC	1 cut(s)	67
PshAI	GACNNNNGTC	1 cut(s)	248
Psp124BI	GAGCTC	1 cut(s)	111
PspPI	GGNCC	1 cut(s)	47
PstI	CTGCAG	1 cut(s)	550
PsuI	RGATCY	1 cut(s)	379
RsaI	GTAC	1 cut(s)	320
RsaNI	GTAC	1 cut(s)	319
SacI	GAGCTC	1 cut(s)	111
SapI	GCTCTTC	1 cut(s)	99
SaqAI	TTAA	2 cut(s)	480, 680
SatI	GCNGC	4 cut(s)	117, 504, 546, 586
Sau3AI	GATC	2 cut(s)	379, 472
Sau96I	GGNCC	1 cut(s)	47
ScaI	AGTACT	1 cut(s)	320
SchI	GAGTC	1 cut(s)	68
ScrFI	CCNGG	1 cut(s)	467
SduI	GDGCHC	3 cut(s)	111, 288, 603
SfaNI	GCATC	5 cut(s)	124, 146, 256, 532, 661
SfcI	CTRYAG	2 cut(s)	207, 546
SfuI	TTCGAA	1 cut(s)	433
SmlI	CTYRAG	3 cut(s)	418, 653, 679
SmoI	CTYRAG	3 cut(s)	418, 653, 679
Sse9I	AATT	2 cut(s)	54, 429
SsiI	CCGC	2 cut(s)	117, 586
SspI	AATATT	1 cut(s)	79
SstI	GAGCTC	1 cut(s)	111
StyD4I	CCNGG	1 cut(s)	465
StyI	CCWWGG	1 cut(s)	665
TaqI	TCGA	5 cut(s)	5, 111, 389, 433, 471
TaqII	GACCGA	1 cut(s)	81
TasI	AATT	2 cut(s)	54, 429
TatI	WGTACW	1 cut(s)	318
TauI	GCSGC	2 cut(s)	119, 588
TfiI	GAWTC	2 cut(s)	341, 391
Tru1I	TTAA	2 cut(s)	480, 680
Tru9I	TTAA	2 cut(s)	480, 680
TscAI	CASTG	1 cut(s)	157
TseFI	GTSAC	1 cut(s)	496
TseI	GCWGC	2 cut(s)	503, 545
Tsp45I	GTSAC	1 cut(s)	496
TspDTI	ATGAA	3 cut(s)	117, 276, 507
TspRI	CASTG	1 cut(s)	157
Vha464I	CTTAAG	1 cut(s)	679
XcmI	CCANNNNNNNNNTGG	1 cut(s)	179
ZrmI	AGTACT	1 cut(s)	320
Zsp2I	ATGCAT	1 cut(s)	139

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.