Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1A

Orthogroup ID

OG0002643

Physical Location & Seq

Genomic Coordinates Reverse (-)

13830246 .. 13832234

Gene Structure 1989 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1AG080900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1146 bp

ATGGATGATAGTCTATACGACGAGTTCGGGAACTATATTGGACCCGAAATCGAGTCTGACCAGGAGAGTGATAGGGAGGAAGAAGATGAGGAGCTTCCCGATAGGTTAGAAGATAGAGGTGCGGCATCTGACGGTGAGGATGCTCAGAATGGGTGGATGACTGCCTCTAATGATGTAGATATGGACAACCAGGTTGTTCTTGCTGAGGACAAGAAGTATTATCCTACAGCGGAGGAGGTGTACGGCGAAGATGTCGAGACGTTGGTCATGGATGAAGATGCACAGCCCCTTGAACAGCTGATTATCAAGCCGGTTCGGAATATTAAGTTTGAGGTTGGTGTCAAGGACTCCTTGACGTATGTGTCGACGCAGTTTCTTGTTGGTCTTATGTCGAACCCTGCTCTGGTTCGGAATGTGGCGCTGGTGGGGCACTTGCAGCATGGGAAGACGGTGTTTATGGAGATGTTGGTGGAACAGACTCATCATATGTCTACTTTTGATGCAAATAGTGATAAGCACATGAGGTACACTGATACGAGGATTGATGAACCAGAGAGGAGGATATCTATTAAGGCTGTTCCCATGTCCCTTGTACTTGAGGATAGCAATTCAAAGTCGTACCTGTGCAATGTCATGGATACTCCTGGTCATGTCAATTTCTCTGATGAAATGACTGCTTCACTTAGGCTCGCTGATGGTGTCCTCATTGTTGATGCTGCAGAAGGGATGATGGTAAATACTGAGAGGGCTATACGCCATGCAATCCAAGAGCGCCTACCAATTGTGGTTGTAATCAACAAGGTTGACAGGTTGATAACAGAACTTAAATTGCCCCCAAGGGATGCTTACTTCAAGCTTAGGCATACTCTGGAAGTGATTAATAACCACGTAACGGCTGCCTCTTCAACTGCTGGTCATGTACAAGTTATTGATCCTGTTGCTGGAAACGTATGCTTTGCAAGCGCTACTGCAGGATGGTCGTTCACTTTGCAATCATTTGCAAAGTTATATGTTAAGCTTCATGGGATCGCTTTTGTAGCGGATCAGTTTGCTACTTATCTATGGGGAGATATGTACTATCATCCTGAGGACAGGGCTTTCAGGAGAAAACCCCCTGCAAGTGGAGGAGAAAGGTCGTTTGTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005681 GO:0005684 GO:0005730 GO:0005737 GO:0005829 GO:0005886 GO:0005911 GO:0007275 GO:0008150 GO:0009506 GO:0009790 GO:0009791 GO:0009793 GO:0009908 GO:0010154 GO:0015030 GO:0016020 GO:0016604 GO:0016607 GO:0022414 GO:0030054 GO:0030312 GO:0030532 GO:0031974 GO:0031981 GO:0032501 GO:0032502 GO:0032991 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043900 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044451 GO:0044464 GO:0045595 GO:0045694 GO:0046540 GO:0048316 GO:0048367 GO:0048437 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0051239 GO:0055044 GO:0061458 GO:0065007 GO:0070013 GO:0071007 GO:0071013 GO:0071944 GO:0090567 GO:0097525 GO:0097526 GO:0099402 GO:0120114 GO:1902494 GO:1990904 GO:2000026 GO:2000241

KEGG Pathways

Metabolic & Signaling

ko03040 map03040

Pfam Domains

Protein Families

EFG_C EFG_IV EFTUD2 GTP_EFTU GTP_EFTU_D2

Protein Analysis

381

Amino Acids

42.81

Weight (kDa)

4.67

Isoelectric Point (pI)

37.64

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
EFTUD2	PF16004	3 - 116	9.3e-36	116 kDa U5 small nuclear ribonucleoprotein component N-terminus
GTP_EFTU	PF00009	136 - 329	2.4e-38	Elongation factor Tu GTP binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002643)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G06220 AT1G06220 AT1G06220 AT5G25230 AT5G25230
fragaria_vesca	FvH4_2g24581 FvH4_7g03790 FvH4_7g03790 FvH4_7g03790
malus_domestica	MD02G1013600.v1.1 MD15G1160400.v1.1
prunus_persica	Prupe.3G036300_v2.0.a1
pyrus_communis	pycom02g01260 pycom15g14420
rosa_chinensis	RchiOBHm_Chr1g0327101 RchiOBHm_Chr1g0327121 RchiOBHm_Chr2g0127751
rosa_laevigata	RLG00000012029 RLG00000012030 RLG00000030043
rosa_multiflora	Rmu_sc0000795.1_g000050 Rmu_sc0004240.1_g000007
rosa_roxburghii	Rroxscaffold_4G00323330 Rroxscaffold_6G00399840 Rroxscaffold_6G00400180
rosa_rugosa	Rorug01G0063500
rosa_samantha	Rh1AG080100 Rh1AG080300 Rh1AG080700 Rh1AG080900 Rh1BG064100 Rh1CG078700 Rh1CG078800 Rh1DG085100 Rh1DG085200 Rh2AG323400 Rh2BG332600 Rh2DG350900
rosa_wichuraiana	Rw1G006400 Rw2G026250

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	361
AccI	GTMKAC	2 cut(s)	365, 491
AciI	CCGC	3 cut(s)	122, 230, 1040
AclWI	GGATC	3 cut(s)	926, 1034, 1050
AfaI	GTAC	6 cut(s)	242, 527, 594, 620, 921, 1076
AfeI	AGCGCT	1 cut(s)	964
AfiI	CCNNNNNNNGG	4 cut(s)	403, 892, 941, 1121
AgsI	TTSAA	4 cut(s)	293, 612, 853, 906
AjnI	CCWGG	3 cut(s)	60, 189, 643
AluBI	AGCT	4 cut(s)	94, 298, 856, 1018
AluI	AGCT	4 cut(s)	94, 298, 856, 1018
Alw26I	GTCTC	1 cut(s)	251
AlwI	GGATC	3 cut(s)	926, 1034, 1050
Aor51HI	AGCGCT	1 cut(s)	964
ApeKI	GCWGC	3 cut(s)	436, 716, 896
AseI	ATTAAT	1 cut(s)	879
AspLEI	GCGC	3 cut(s)	421, 774, 965
AspS9I	GGNCC	1 cut(s)	41
AsuHPI	GGTGA	1 cut(s)	146
AvaII	GGWCC	1 cut(s)	41
AxyI	CCTNAGG	1 cut(s)	1086
BaeGI	GKGCMC	1 cut(s)	432
BbsI	GAAGAC	1 cut(s)	452
BbvCI	CCTCAGC	1 cut(s)	204
BbvI	GCAGC	3 cut(s)	448, 703, 883
BccI	CCATC	3 cut(s)	689, 724, 969
BceAI	ACGGC	2 cut(s)	259, 909
BcgI	CGANNNNNNTGC	2 cut(s)	960, 994
BciT130I	CCWGG	3 cut(s)	62, 191, 645
BciVI	GTATCC	1 cut(s)	631
BcoDI	GTCTC	1 cut(s)	251
BfaI	CTAG	1 cut(s)	1144
BfmI	CTRYAG	3 cut(s)	225, 717, 969
BfoI	RGCGCY	3 cut(s)	422, 775, 966
BfuI	GTATCC	1 cut(s)	631
BisI	GCNGC	4 cut(s)	123, 437, 717, 897
BlsI	GCNGC	4 cut(s)	124, 438, 718, 898
Bme1390I	CCNGG	3 cut(s)	62, 191, 645
Bme18I	GGWCC	1 cut(s)	41
BmgT120I	GGNCC	1 cut(s)	41
BmiI	GGNNCC	1 cut(s)	43
BmrFI	CCNGG	3 cut(s)	62, 191, 645
BmsI	GCATC	6 cut(s)	130, 134, 268, 490, 703, 832
BoxI	GACNNNNGTC	1 cut(s)	263
BpiI	GAAGAC	1 cut(s)	452
Bpu10I	CCTNAGC	2 cut(s)	204, 857
BpuEI	CTTGAG	1 cut(s)	617
BsaAI	YACGTR	1 cut(s)	889
BsaJI	CCNNGG	1 cut(s)	836
BsaXI	ACNNNNNCTCC	2 cut(s)	224, 254
Bsc4I	CCNNNNNNNGG	4 cut(s)	403, 892, 941, 1121
Bse118I	RCCGGY	1 cut(s)	310
Bse21I	CCTNAGG	1 cut(s)	1086
Bse3DI	GCAATG	1 cut(s)	634
BseBI	CCWGG	3 cut(s)	62, 191, 645
BseDI	CCNNGG	1 cut(s)	836
BseGI	GGATG	8 cut(s)	10, 145, 162, 277, 732, 847, 980, 1081
BseLI	CCNNNNNNNGG	4 cut(s)	403, 892, 941, 1121
BseMI	GCAATG	1 cut(s)	634
BseMII	CTCAG	4 cut(s)	158, 195, 732, 1077
BseRI	GAGGAG	4 cut(s)	104, 248, 571, 1140
BseSI	GKGCMC	1 cut(s)	432
BseXI	GCAGC	3 cut(s)	448, 703, 883
BsiSI	CCGG	1 cut(s)	311
BslFI	GGGAC	1 cut(s)	571
BslI	CCNNNNNNNGG	4 cut(s)	403, 892, 941, 1121
BsmAI	GTCTC	1 cut(s)	251
BsmBI	CGTCTC	1 cut(s)	251
BsmFI	GGGAC	1 cut(s)	571
Bsp1286I	GDGCHC	1 cut(s)	432
Bsp1407I	TGTACA	1 cut(s)	919
Bsp143I	GATC	3 cut(s)	931, 1026, 1042
BspACI	CCGC	3 cut(s)	122, 230, 1040
BspCNI	CTCAG	4 cut(s)	157, 196, 733, 1078
BspLI	GGNNCC	1 cut(s)	43
BspMAI	CTGCAG	2 cut(s)	721, 973
BspPI	GGATC	3 cut(s)	926, 1034, 1050
BsrDI	GCAATG	1 cut(s)	634
BsrFI	RCCGGY	1 cut(s)	310
BsrGI	TGTACA	1 cut(s)	919
BssAI	RCCGGY	1 cut(s)	310
BssECI	CCNNGG	1 cut(s)	836
BssMI	GATC	3 cut(s)	931, 1026, 1042
BssT1I	CCWWGG	1 cut(s)	836
Bst2UI	CCWGG	3 cut(s)	62, 191, 645
Bst4CI	ACNGT	2 cut(s)	134, 451
Bst6I	CTCTTC	1 cut(s)	907
BstAUI	TGTACA	1 cut(s)	919
BstBAI	YACGTR	1 cut(s)	889
BstC8I	GCNNGC	2 cut(s)	690, 961
BstDEI	CTNAG	6 cut(s)	144, 204, 683, 741, 857, 1086
BstF5I	GGATG	8 cut(s)	10, 145, 162, 277, 732, 847, 980, 1081
BstH2I	RGCGCY	3 cut(s)	422, 775, 966
BstHHI	GCGC	3 cut(s)	421, 774, 965
BstKTI	GATC	3 cut(s)	934, 1029, 1045
BstMAI	GTCTC	1 cut(s)	251
BstMBI	GATC	3 cut(s)	931, 1026, 1042
BstMWI	GCNNNNNNNGC	4 cut(s)	427, 436, 960, 1037
BstNI	CCWGG	3 cut(s)	62, 191, 645
BstPAI	GACNNNNGTC	1 cut(s)	263
BstSCI	CCNGG	3 cut(s)	60, 189, 643
BstSFI	CTRYAG	3 cut(s)	225, 717, 969
BstSLI	GKGCMC	1 cut(s)	432
BstV1I	GCAGC	3 cut(s)	448, 703, 883
BstV2I	GAAGAC	1 cut(s)	452
Bsu36I	CCTNAGG	1 cut(s)	1086
BsuI	GTATCC	1 cut(s)	631
BtsCI	GGATG	8 cut(s)	10, 145, 162, 277, 732, 847, 980, 1081
BtsIMutI	CAGTG	1 cut(s)	528
Cac8I	GCNNGC	2 cut(s)	690, 961
CfoI	GCGC	3 cut(s)	421, 774, 965
Cfr10I	RCCGGY	1 cut(s)	310
Cfr13I	GGNCC	1 cut(s)	41
CseI	GACGC	1 cut(s)	376
CsiI	ACCWGGT	1 cut(s)	189
Csp6I	GTAC	6 cut(s)	241, 526, 593, 619, 920, 1075
CviAII	CATG	9 cut(s)	268, 440, 520, 583, 634, 650, 758, 917, 1022
CviQI	GTAC	6 cut(s)	241, 526, 593, 619, 920, 1075
DdeI	CTNAG	6 cut(s)	144, 204, 683, 741, 857, 1086
DpnI	GATC	3 cut(s)	933, 1028, 1044
DpnII	GATC	3 cut(s)	931, 1026, 1042
DrdI	GACNNNNNNGTC	1 cut(s)	361
DseDI	GACNNNNNNGTC	1 cut(s)	361
Eam1104I	CTCTTC	1 cut(s)	907
EarI	CTCTTC	1 cut(s)	907
Eco130I	CCWWGG	1 cut(s)	836
Eco32I	GATATC	1 cut(s)	564
Eco47I	GGWCC	1 cut(s)	41
Eco47III	AGCGCT	1 cut(s)	964
Eco81I	CCTNAGG	1 cut(s)	1086
EcoRII	CCWGG	3 cut(s)	60, 189, 643
EcoRV	GATATC	1 cut(s)	564
EcoT14I	CCWWGG	1 cut(s)	836
ErhI	CCWWGG	1 cut(s)	836
Esp3I	CGTCTC	1 cut(s)	251
FaeI	CATG	9 cut(s)	271, 443, 523, 586, 637, 653, 761, 920, 1025
FalI	AAGNNNNNCTT	4 cut(s)	335, 367, 829, 861
FaqI	GGGAC	1 cut(s)	571
FatI	CATG	9 cut(s)	267, 439, 519, 582, 633, 649, 757, 916, 1021
FauNDI	CATATG	1 cut(s)	486
FblI	GTMKAC	2 cut(s)	365, 491
Fnu4HI	GCNGC	4 cut(s)	123, 437, 717, 897
FokI	GGATG	8 cut(s)	17, 152, 169, 284, 739, 854, 987, 1068
Fsp4HI	GCNGC	4 cut(s)	123, 437, 717, 897
FspBI	CTAG	1 cut(s)	1144
GlaI	GCGC	3 cut(s)	420, 773, 964
GluI	GCNGC	4 cut(s)	123, 437, 717, 897
HaeII	RGCGCY	3 cut(s)	422, 775, 966
HapII	CCGG	1 cut(s)	311
HgaI	GACGC	1 cut(s)	376
HhaI	GCGC	3 cut(s)	421, 774, 965
Hin1II	CATG	9 cut(s)	271, 443, 523, 586, 637, 653, 761, 920, 1025
Hin6I	GCGC	3 cut(s)	419, 772, 963
HinP1I	GCGC	3 cut(s)	419, 772, 963
HincII	GTYRAC	2 cut(s)	366, 805
HindII	GTYRAC	2 cut(s)	366, 805
HindIII	AAGCTT	2 cut(s)	854, 1016
HinfI	GANTC	3 cut(s)	53, 347, 478
HpaII	CCGG	1 cut(s)	311
HphI	GGTGA	1 cut(s)	146
Hpy166II	GTNNAC	6 cut(s)	241, 366, 492, 528, 805, 984
Hpy188I	TCNGA	6 cut(s)	58, 130, 147, 318, 411, 664
Hpy188III	TCNNGA	6 cut(s)	28, 98, 256, 869, 1085, 1102
Hpy8I	GTNNAC	6 cut(s)	241, 366, 492, 528, 805, 984
Hpy99I	CGWCG	2 cut(s)	23, 370
HpyAV	CCTTC	1 cut(s)	716
HpyCH4III	ACNGT	2 cut(s)	134, 451
HpyCH4IV	ACGT	4 cut(s)	260, 356, 888, 948
HpyF10VI	GCNNNNNNNGC	4 cut(s)	427, 436, 960, 1037
HpyF3I	CTNAG	6 cut(s)	144, 204, 683, 741, 857, 1086
HpySE526I	ACGT	4 cut(s)	260, 356, 888, 948
Hsp92II	CATG	9 cut(s)	271, 443, 523, 586, 637, 653, 761, 920, 1025
HspAI	GCGC	3 cut(s)	419, 772, 963
Kzo9I	GATC	3 cut(s)	931, 1026, 1042
LmnI	GCTCC	1 cut(s)	91
Lsp1109I	GCAGC	3 cut(s)	448, 703, 883
LweI	GCATC	6 cut(s)	130, 134, 268, 490, 703, 832
MabI	ACCWGGT	1 cut(s)	189
MaeI	CTAG	1 cut(s)	1144
MaeII	ACGT	4 cut(s)	260, 356, 888, 948
MaeIII	GTNAC	1 cut(s)	889
MalI	GATC	3 cut(s)	933, 1028, 1044
MboI	GATC	3 cut(s)	931, 1026, 1042
MboII	GAAGA	7 cut(s)	92, 95, 122, 260, 287, 457, 894
MfeI	CAATTG	1 cut(s)	780
MhlI	GDGCHC	1 cut(s)	432
MluCI	AATT	4 cut(s)	607, 655, 780, 827
MlyI	GAGTC	3 cut(s)	62, 341, 472
MseI	TTAA	5 cut(s)	324, 570, 825, 879, 1014
MspA1I	CMGCKG	2 cut(s)	230, 298
MspI	CCGG	1 cut(s)	311
MspR9I	CCNGG	3 cut(s)	62, 191, 645
MunI	CAATTG	1 cut(s)	780
MvaI	CCWGG	3 cut(s)	62, 191, 645
MwoI	GCNNNNNNNGC	4 cut(s)	427, 436, 960, 1037
NdeI	CATATG	1 cut(s)	486
NdeII	GATC	3 cut(s)	931, 1026, 1042
NlaIII	CATG	9 cut(s)	271, 443, 523, 586, 637, 653, 761, 920, 1025
NlaIV	GGNNCC	1 cut(s)	43
PcsI	WCGNNNNNNNCGW	1 cut(s)	362
PkrI	GCNGC	4 cut(s)	124, 438, 718, 898
PleI	GAGTC	3 cut(s)	61, 341, 472
PpsI	GAGTC	3 cut(s)	61, 341, 472
Ppu21I	YACGTR	1 cut(s)	889
PshAI	GACNNNNGTC	1 cut(s)	263
PshBI	ATTAAT	1 cut(s)	879
Psp6I	CCWGG	3 cut(s)	60, 189, 643
PspGI	CCWGG	3 cut(s)	60, 189, 643
PspN4I	GGNNCC	1 cut(s)	43
PspPI	GGNCC	1 cut(s)	41
PstI	CTGCAG	2 cut(s)	721, 973
PvuII	CAGCTG	1 cut(s)	298
RsaI	GTAC	6 cut(s)	242, 527, 594, 620, 921, 1076
RsaNI	GTAC	6 cut(s)	241, 526, 593, 619, 920, 1075
SalI	GTCGAC	1 cut(s)	364
SaqAI	TTAA	5 cut(s)	324, 570, 825, 879, 1014
SatI	GCNGC	4 cut(s)	123, 437, 717, 897
Sau3AI	GATC	3 cut(s)	931, 1026, 1042
Sau96I	GGNCC	1 cut(s)	41
SchI	GAGTC	3 cut(s)	62, 341, 472
ScrFI	CCNGG	3 cut(s)	62, 191, 645
SduI	GDGCHC	1 cut(s)	432
SexAI	ACCWGGT	1 cut(s)	189
SfaNI	GCATC	6 cut(s)	130, 134, 268, 490, 703, 832
SfcI	CTRYAG	3 cut(s)	225, 717, 969
SinI	GGWCC	1 cut(s)	41
SmlI	CTYRAG	1 cut(s)	596
SmoI	CTYRAG	1 cut(s)	596
Sse9I	AATT	4 cut(s)	607, 655, 780, 827
SsiI	CCGC	3 cut(s)	122, 230, 1040
SspI	AATATT	1 cut(s)	322
SspMI	CTAG	1 cut(s)	1144
StyD4I	CCNGG	3 cut(s)	60, 189, 643
StyI	CCWWGG	1 cut(s)	836
TaaI	ACNGT	2 cut(s)	134, 451
TaiI	ACGT	4 cut(s)	263, 359, 891, 951
TaqI	TCGA	4 cut(s)	51, 255, 365, 392
TasI	AATT	4 cut(s)	607, 655, 780, 827
TatI	WGTACW	3 cut(s)	592, 919, 1074
TauI	GCSGC	1 cut(s)	125
Tru1I	TTAA	5 cut(s)	324, 570, 825, 879, 1014
Tru9I	TTAA	5 cut(s)	324, 570, 825, 879, 1014
TscAI	CASTG	1 cut(s)	535
TseI	GCWGC	3 cut(s)	436, 716, 896
TspDTI	ATGAA	4 cut(s)	288, 561, 681, 1010
TspRI	CASTG	1 cut(s)	535
VpaK11BI	GGWCC	1 cut(s)	41
VspI	ATTAAT	1 cut(s)	879
XmiI	GTMKAC	2 cut(s)	365, 491
XspI	CTAG	1 cut(s)	1144

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.