Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1A

Orthogroup ID

OG0002643

Physical Location & Seq

Genomic Coordinates Reverse (-)

13560944 .. 13682988

Gene Structure 122045 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1AG080100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 513 bp

ATGGCAACCCCACGGCTCATGGAGCCAGTATATTATGTGGAGATACAAACGCCAATCGACTGTATATCTGCAATCTACACTGTTTTATCTCGCAGGCGTGGACATGTTACAGCCGATGTTCCTCAACCCGGGACCCCAGCTTACATCGTTAAGGCATTTTTACCCGTCATAGAATCGTTTGGTTTTGAGACGGACTTGAGGTACCATACTCAAGGACAGGCTTTTTGCCTCTCAGTCTTTGATCATTGGGCTATAGTTCCTGGGGATCCTCTTGACAAGAGTATTGTTCTGCGACCACTTGAACCCGCACCGATTCAGCACCTGGCTCGTGAATTTATGGTCAAGACAAGGCGTAGAAAGGGAATGAGCGAGAATGTGAGCATCAGCAAATTTTTCGATGAGGCCATGATGGTGGAACTGGTTCAGCAGGAAGCTGATATTCACCAGCAAATGATCGATATGATTGGCTTCATGATATGGTGTCCACAAATCCATAGTCGAGAGAGGTCGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005681 GO:0005684 GO:0005730 GO:0005737 GO:0005829 GO:0005886 GO:0005911 GO:0007275 GO:0008150 GO:0009506 GO:0009790 GO:0009791 GO:0009793 GO:0009908 GO:0010154 GO:0015030 GO:0016020 GO:0016604 GO:0016607 GO:0022414 GO:0030054 GO:0030312 GO:0030532 GO:0031974 GO:0031981 GO:0032501 GO:0032502 GO:0032991 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043900 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044451 GO:0044464 GO:0045595 GO:0045694 GO:0046540 GO:0048316 GO:0048367 GO:0048437 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0051239 GO:0055044 GO:0061458 GO:0065007 GO:0070013 GO:0071007 GO:0071013 GO:0071944 GO:0090567 GO:0097525 GO:0097526 GO:0099402 GO:0120114 GO:1902494 GO:1990904 GO:2000026 GO:2000241

KEGG Pathways

Metabolic & Signaling

ko03040 map03040

Pfam Domains

Protein Families

EFG_C EFG_IV EFTUD2 GTP_EFTU GTP_EFTU_D2

Protein Analysis

170

Amino Acids

19.55

Weight (kDa)

6.05

Isoelectric Point (pI)

56.44

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
EFG_C	PF00679	5 - 93	1.6e-23	Elongation factor G C-terminus

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0002643)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G06220 AT1G06220 AT1G06220 AT5G25230 AT5G25230
fragaria_vesca	FvH4_2g24581 FvH4_7g03790 FvH4_7g03790 FvH4_7g03790
malus_domestica	MD02G1013600.v1.1 MD15G1160400.v1.1
prunus_persica	Prupe.3G036300_v2.0.a1
pyrus_communis	pycom02g01260 pycom15g14420
rosa_chinensis	RchiOBHm_Chr1g0327101 RchiOBHm_Chr1g0327121 RchiOBHm_Chr2g0127751
rosa_laevigata	RLG00000012029 RLG00000012030 RLG00000030043
rosa_multiflora	Rmu_sc0000795.1_g000050 Rmu_sc0004240.1_g000007
rosa_roxburghii	Rroxscaffold_4G00323330 Rroxscaffold_6G00399840 Rroxscaffold_6G00400180
rosa_rugosa	Rorug01G0063500
rosa_samantha	Rh1AG080100 Rh1AG080300 Rh1AG080700 Rh1AG080900 Rh1BG064100 Rh1CG078700 Rh1CG078800 Rh1DG085100 Rh1DG085200 Rh2AG323400 Rh2BG332600 Rh2DG350900
rosa_wichuraiana	Rw1G006400 Rw2G026250

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	201
AccB1I	GGYRCC	1 cut(s)	201
AciI	CCGC	1 cut(s)	306
AclWI	GGATC	2 cut(s)	260, 273
AcsI	RAATTY	2 cut(s)	332, 389
AfaI	GTAC	1 cut(s)	203
AfiI	CCNNNNNNNGG	1 cut(s)	128
AflIII	ACRYGT	1 cut(s)	103
AgsI	TTSAA	1 cut(s)	302
AjnI	CCWGG	2 cut(s)	259, 321
AluBI	AGCT	2 cut(s)	140, 434
AluI	AGCT	2 cut(s)	140, 434
Alw26I	GTCTC	1 cut(s)	182
AlwI	GGATC	2 cut(s)	260, 273
AlwNI	CAGNNNCTG	1 cut(s)	322
Ama87I	CYCGRG	1 cut(s)	128
AoxI	GGCC	1 cut(s)	402
ApoI	RAATTY	2 cut(s)	332, 389
ArsI	GACNNNNNNTTYG	4 cut(s)	207, 239, 481, 513
Asp700I	GAANNNNTTC	1 cut(s)	420
Asp718I	GGTACC	1 cut(s)	201
AspS9I	GGNCC	1 cut(s)	132
AsuC2I	CCSGG	2 cut(s)	129, 130
AsuHPI	GGTGA	1 cut(s)	434
AvaI	CYCGRG	1 cut(s)	128
AvaII	GGWCC	1 cut(s)	132
BamHI	GGATCC	1 cut(s)	265
BanI	GGYRCC	1 cut(s)	201
BauI	CACGAG	1 cut(s)	327
BccI	CCATC	1 cut(s)	403
BceAI	ACGGC	1 cut(s)	29
BcgI	CGANNNNNNTGC	4 cut(s)	308, 342, 376, 410
BciT130I	CCWGG	2 cut(s)	261, 323
BclI	TGATCA	1 cut(s)	241
BcnI	CCSGG	2 cut(s)	129, 130
BcoDI	GTCTC	1 cut(s)	182
BfmI	CTRYAG	1 cut(s)	252
Bme1390I	CCNGG	4 cut(s)	129, 130, 261, 323
Bme18I	GGWCC	1 cut(s)	132
BmeT110I	CYCGRG	1 cut(s)	128
BmgT120I	GGNCC	1 cut(s)	132
BmiI	GGNNCC	5 cut(s)	24, 133, 134, 203, 267
BmrFI	CCNGG	4 cut(s)	129, 130, 261, 323
BmsI	GCATC	1 cut(s)	390
BpuEI	CTTGAG	2 cut(s)	195, 217
BpuMI	CCSGG	2 cut(s)	129, 130
Bsa29I	ATCGAT	1 cut(s)	456
BsaJI	CCNNGG	3 cut(s)	11, 128, 260
Bsc4I	CCNNNNNNNGG	1 cut(s)	128
Bse1I	ACTGG	2 cut(s)	26, 423
BseBI	CCWGG	2 cut(s)	261, 323
BseCI	ATCGAT	1 cut(s)	456
BseDI	CCNNGG	3 cut(s)	11, 128, 260
BseLI	CCNNNNNNNGG	1 cut(s)	128
BseMII	CTCAG	1 cut(s)	246
BseNI	ACTGG	2 cut(s)	26, 423
BseYI	CCCAGC	1 cut(s)	136
BshFI	GGCC	1 cut(s)	404
BshNI	GGYRCC	1 cut(s)	201
BshVI	ATCGAT	1 cut(s)	456
BsiHKCI	CYCGRG	1 cut(s)	128
BsiSI	CCGG	1 cut(s)	129
BslFI	GGGAC	1 cut(s)	145
BslI	CCNNNNNNNGG	1 cut(s)	128
BsmAI	GTCTC	1 cut(s)	182
BsmBI	CGTCTC	1 cut(s)	182
BsmFI	GGGAC	1 cut(s)	145
BsnI	GGCC	1 cut(s)	404
BsoBI	CYCGRG	1 cut(s)	128
Bsp143I	GATC	3 cut(s)	241, 265, 453
BspACI	CCGC	1 cut(s)	306
BspANI	GGCC	1 cut(s)	404
BspCNI	CTCAG	1 cut(s)	245
BspDI	ATCGAT	1 cut(s)	456
BspHI	TCATGA	1 cut(s)	471
BspLI	GGNNCC	5 cut(s)	24, 133, 134, 203, 267
BspPI	GGATC	2 cut(s)	260, 273
BspT107I	GGYRCC	1 cut(s)	201
BsrI	ACTGG	2 cut(s)	26, 423
BssECI	CCNNGG	3 cut(s)	11, 128, 260
BssMI	GATC	3 cut(s)	241, 265, 453
BssSI	CACGAG	1 cut(s)	327
Bst2BI	CACGAG	1 cut(s)	327
Bst2UI	CCWGG	2 cut(s)	261, 323
Bst4CI	ACNGT	2 cut(s)	62, 82
BstC8I	GCNNGC	1 cut(s)	95
BstDEI	CTNAG	1 cut(s)	232
BstDSI	CCRYGG	1 cut(s)	11
BstKTI	GATC	3 cut(s)	244, 268, 456
BstMAI	GTCTC	1 cut(s)	182
BstMBI	GATC	3 cut(s)	241, 265, 453
BstMWI	GCNNNNNNNGC	1 cut(s)	22
BstNI	CCWGG	2 cut(s)	261, 323
BstNSI	RCATGY	1 cut(s)	107
BstSCI	CCNGG	4 cut(s)	127, 128, 259, 321
BstSFI	CTRYAG	1 cut(s)	252
BstX2I	RGATCY	1 cut(s)	265
BstXI	CCANNNNNNTGG	1 cut(s)	412
BstYI	RGATCY	1 cut(s)	265
Bsu15I	ATCGAT	1 cut(s)	456
BsuRI	GGCC	1 cut(s)	404
BsuTUI	ATCGAT	1 cut(s)	456
BtgI	CCRYGG	1 cut(s)	11
BtsIMutI	CAGTG	1 cut(s)	78
Cac8I	GCNNGC	1 cut(s)	95
CaiI	CAGNNNCTG	1 cut(s)	322
CciI	TCATGA	1 cut(s)	471
Cfr13I	GGNCC	1 cut(s)	132
Cfr9I	CCCGGG	1 cut(s)	128
ClaI	ATCGAT	1 cut(s)	456
Csp6I	GTAC	1 cut(s)	202
CviAII	CATG	4 cut(s)	19, 104, 406, 472
CviQI	GTAC	1 cut(s)	202
DdeI	CTNAG	1 cut(s)	232
DpnI	GATC	3 cut(s)	243, 267, 455
DpnII	GATC	3 cut(s)	241, 265, 453
Eco47I	GGWCC	1 cut(s)	132
Eco88I	CYCGRG	1 cut(s)	128
EcoO109I	RGGNCCY	1 cut(s)	132
EcoRII	CCWGG	2 cut(s)	259, 321
Esp3I	CGTCTC	1 cut(s)	182
FaeI	CATG	4 cut(s)	22, 107, 409, 475
FaqI	GGGAC	1 cut(s)	145
FatI	CATG	4 cut(s)	18, 103, 405, 471
FauI	CCCGC	1 cut(s)	313
FbaI	TGATCA	1 cut(s)	241
GsaI	CCCAGC	1 cut(s)	140
HaeIII	GGCC	1 cut(s)	404
HapII	CCGG	1 cut(s)	129
Hin1II	CATG	4 cut(s)	22, 107, 409, 475
HinfI	GANTC	2 cut(s)	173, 313
HpaII	CCGG	1 cut(s)	129
HphI	GGTGA	1 cut(s)	434
Hpy166II	GTNNAC	2 cut(s)	101, 485
Hpy188III	TCNNGA	5 cut(s)	272, 329, 343, 472, 500
Hpy8I	GTNNAC	2 cut(s)	101, 485
HpyCH4III	ACNGT	2 cut(s)	62, 82
HpyCH4V	TGCA	1 cut(s)	71
HpyF10VI	GCNNNNNNNGC	1 cut(s)	22
HpyF3I	CTNAG	1 cut(s)	232
Hsp92II	CATG	4 cut(s)	22, 107, 409, 475
KflI	GGGWCCC	1 cut(s)	132
KpnI	GGTACC	1 cut(s)	205
Ksp22I	TGATCA	1 cut(s)	241
Kzo9I	GATC	3 cut(s)	241, 265, 453
LmnI	GCTCC	1 cut(s)	22
LweI	GCATC	1 cut(s)	390
MaeIII	GTNAC	1 cut(s)	106
MalI	GATC	3 cut(s)	243, 267, 455
MboI	GATC	3 cut(s)	241, 265, 453
MflI	RGATCY	1 cut(s)	265
MluCI	AATT	2 cut(s)	332, 389
MnlI	CCTC	6 cut(s)	132, 192, 239, 279, 394, 498
MroXI	GAANNNNTTC	1 cut(s)	420
MseI	TTAA	1 cut(s)	150
MslI	CAYNNNNRTG	1 cut(s)	410
MspI	CCGG	1 cut(s)	129
MspR9I	CCNGG	4 cut(s)	129, 130, 261, 323
MvaI	CCWGG	2 cut(s)	261, 323
MwoI	GCNNNNNNNGC	1 cut(s)	22
NciI	CCSGG	2 cut(s)	129, 130
NdeII	GATC	3 cut(s)	241, 265, 453
NlaIII	CATG	4 cut(s)	22, 107, 409, 475
NlaIV	GGNNCC	5 cut(s)	24, 133, 134, 203, 267
NspI	RCATGY	1 cut(s)	107
PagI	TCATGA	1 cut(s)	471
PciI	ACATGT	1 cut(s)	103
PdmI	GAANNNNTTC	1 cut(s)	420
PfeI	GAWTC	2 cut(s)	173, 313
PpuMI	RGGWCCY	1 cut(s)	132
PscI	ACATGT	1 cut(s)	103
Psp5II	RGGWCCY	1 cut(s)	132
Psp6I	CCWGG	2 cut(s)	259, 321
PspFI	CCCAGC	1 cut(s)	136
PspGI	CCWGG	2 cut(s)	259, 321
PspN4I	GGNNCC	5 cut(s)	24, 133, 134, 203, 267
PspPI	GGNCC	1 cut(s)	132
PspPPI	RGGWCCY	1 cut(s)	132
PstNI	CAGNNNCTG	1 cut(s)	322
PsuI	RGATCY	1 cut(s)	265
RsaI	GTAC	1 cut(s)	203
RsaNI	GTAC	1 cut(s)	202
RseI	CAYNNNNRTG	1 cut(s)	410
SaqAI	TTAA	1 cut(s)	150
Sau3AI	GATC	3 cut(s)	241, 265, 453
Sau96I	GGNCC	1 cut(s)	132
ScrFI	CCNGG	4 cut(s)	129, 130, 261, 323
SetI	ASST	5 cut(s)	142, 203, 324, 436, 509
SfaNI	GCATC	1 cut(s)	390
SfcI	CTRYAG	1 cut(s)	252
SinI	GGWCC	1 cut(s)	132
SmaI	CCCGGG	1 cut(s)	130
SmiMI	CAYNNNNRTG	1 cut(s)	410
SmlI	CTYRAG	2 cut(s)	196, 210
SmoI	CTYRAG	2 cut(s)	196, 210
Sse9I	AATT	2 cut(s)	332, 389
SsiI	CCGC	1 cut(s)	306
StyD4I	CCNGG	4 cut(s)	127, 128, 259, 321
TaaI	ACNGT	2 cut(s)	62, 82
TaqI	TCGA	4 cut(s)	57, 396, 456, 499
TasI	AATT	2 cut(s)	332, 389
TfiI	GAWTC	2 cut(s)	173, 313
Tru1I	TTAA	1 cut(s)	150
Tru9I	TTAA	1 cut(s)	150
TscAI	CASTG	1 cut(s)	85
TspDTI	ATGAA	1 cut(s)	460
TspGWI	ACGGA	1 cut(s)	206
TspMI	CCCGGG	1 cut(s)	128
TspRI	CASTG	1 cut(s)	85
VpaK11BI	GGWCC	1 cut(s)	132
XapI	RAATTY	2 cut(s)	332, 389
XceI	RCATGY	1 cut(s)	107
XmaI	CCCGGG	1 cut(s)	128
XmnI	GAANNNNTTC	1 cut(s)	420

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.