Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1A

Orthogroup ID

OG0002643

Physical Location & Seq

Genomic Coordinates Reverse (-)

13781210 .. 13828426

Gene Structure 47217 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1AG080700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 459 bp

ATGGCAACCCCACGGCTCATGGAGCCAGTATATTATGTGGAGATACAAACGCCAATCGACTGTATATCTGCAATCTACACTGTTTTATCTCGCAGGCGTGGACATGTTACAGCCGATGTTCCTCAACCCGGGACCCCAGCTTACATCGTTAAGGCATTTTTACCCGTCATAGAATCGTTTGGTTTTGAGACGGACTTGAGGTACCATACTCAAGGACAGGCTTTTTGCCTCTCAGTCTTTGATCATTGGGCTATAGTTCCTGGGGATCCTCTTGACAAGAGTATTGTTCTGCGACCACTTGAACCCGCACCGATTCAGCACCTGGCTCGTGAATTTATGGTCAAGACAAGGCGTAGAAAGGGAATGAGCGAGGATGTGAGCATCAGCAAATTTTTTGATGAGGCCATGATGGTGGAACTGGCTCAGCAGGAAGCTGATATTCACCAGCAAATGATATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005681 GO:0005684 GO:0005730 GO:0005737 GO:0005829 GO:0005886 GO:0005911 GO:0007275 GO:0008150 GO:0009506 GO:0009790 GO:0009791 GO:0009793 GO:0009908 GO:0010154 GO:0015030 GO:0016020 GO:0016604 GO:0016607 GO:0022414 GO:0030054 GO:0030312 GO:0030532 GO:0031974 GO:0031981 GO:0032501 GO:0032502 GO:0032991 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043900 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044451 GO:0044464 GO:0045595 GO:0045694 GO:0046540 GO:0048316 GO:0048367 GO:0048437 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0051239 GO:0055044 GO:0061458 GO:0065007 GO:0070013 GO:0071007 GO:0071013 GO:0071944 GO:0090567 GO:0097525 GO:0097526 GO:0099402 GO:0120114 GO:1902494 GO:1990904 GO:2000026 GO:2000241

KEGG Pathways

Metabolic & Signaling

ko03040 map03040

Pfam Domains

Protein Families

EFG_C EFG_IV EFTUD2 GTP_EFTU GTP_EFTU_D2

Protein Analysis

152

Amino Acids

17.33

Weight (kDa)

5.69

Isoelectric Point (pI)

55.7

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
EFG_C	PF00679	5 - 93	1.2e-23	Elongation factor G C-terminus

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002643)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G06220 AT1G06220 AT1G06220 AT5G25230 AT5G25230
fragaria_vesca	FvH4_2g24581 FvH4_7g03790 FvH4_7g03790 FvH4_7g03790
malus_domestica	MD02G1013600.v1.1 MD15G1160400.v1.1
prunus_persica	Prupe.3G036300_v2.0.a1
pyrus_communis	pycom02g01260 pycom15g14420
rosa_chinensis	RchiOBHm_Chr1g0327101 RchiOBHm_Chr1g0327121 RchiOBHm_Chr2g0127751
rosa_laevigata	RLG00000012029 RLG00000012030 RLG00000030043
rosa_multiflora	Rmu_sc0000795.1_g000050 Rmu_sc0004240.1_g000007
rosa_roxburghii	Rroxscaffold_4G00323330 Rroxscaffold_6G00399840 Rroxscaffold_6G00400180
rosa_rugosa	Rorug01G0063500
rosa_samantha	Rh1AG080100 Rh1AG080300 Rh1AG080700 Rh1AG080900 Rh1BG064100 Rh1CG078700 Rh1CG078800 Rh1DG085100 Rh1DG085200 Rh2AG323400 Rh2BG332600 Rh2DG350900
rosa_wichuraiana	Rw1G006400 Rw2G026250

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	201
AccB1I	GGYRCC	1 cut(s)	201
AciI	CCGC	1 cut(s)	306
AclWI	GGATC	2 cut(s)	260, 273
AcsI	RAATTY	2 cut(s)	332, 389
AfaI	GTAC	1 cut(s)	203
AfiI	CCNNNNNNNGG	1 cut(s)	128
AflIII	ACRYGT	1 cut(s)	103
AgsI	TTSAA	1 cut(s)	302
AjnI	CCWGG	2 cut(s)	259, 321
AluBI	AGCT	2 cut(s)	140, 434
AluI	AGCT	2 cut(s)	140, 434
Alw26I	GTCTC	1 cut(s)	182
AlwI	GGATC	2 cut(s)	260, 273
AlwNI	CAGNNNCTG	1 cut(s)	322
Ama87I	CYCGRG	1 cut(s)	128
AoxI	GGCC	1 cut(s)	402
ApoI	RAATTY	2 cut(s)	332, 389
ArsI	GACNNNNNNTTYG	2 cut(s)	207, 239
Asp718I	GGTACC	1 cut(s)	201
AspS9I	GGNCC	1 cut(s)	132
AsuC2I	CCSGG	2 cut(s)	129, 130
AsuHPI	GGTGA	1 cut(s)	434
AvaI	CYCGRG	1 cut(s)	128
AvaII	GGWCC	1 cut(s)	132
BamHI	GGATCC	1 cut(s)	265
BanI	GGYRCC	1 cut(s)	201
BauI	CACGAG	1 cut(s)	327
BccI	CCATC	1 cut(s)	403
BceAI	ACGGC	1 cut(s)	29
BcgI	CGANNNNNNTGC	2 cut(s)	308, 342
BciT130I	CCWGG	2 cut(s)	261, 323
BclI	TGATCA	1 cut(s)	241
BcnI	CCSGG	2 cut(s)	129, 130
BcoDI	GTCTC	1 cut(s)	182
BfmI	CTRYAG	1 cut(s)	252
BlpI	GCTNAGC	1 cut(s)	423
Bme1390I	CCNGG	4 cut(s)	129, 130, 261, 323
Bme18I	GGWCC	1 cut(s)	132
BmeT110I	CYCGRG	1 cut(s)	128
BmgT120I	GGNCC	1 cut(s)	132
BmiI	GGNNCC	5 cut(s)	24, 133, 134, 203, 267
BmrFI	CCNGG	4 cut(s)	129, 130, 261, 323
BmsI	GCATC	1 cut(s)	390
Bpu1102I	GCTNAGC	1 cut(s)	423
BpuEI	CTTGAG	2 cut(s)	195, 217
BpuMI	CCSGG	2 cut(s)	129, 130
BsaJI	CCNNGG	3 cut(s)	11, 128, 260
Bsc4I	CCNNNNNNNGG	1 cut(s)	128
Bse1I	ACTGG	2 cut(s)	26, 423
BseBI	CCWGG	2 cut(s)	261, 323
BseDI	CCNNGG	3 cut(s)	11, 128, 260
BseGI	GGATG	1 cut(s)	379
BseLI	CCNNNNNNNGG	1 cut(s)	128
BseMII	CTCAG	2 cut(s)	246, 437
BseNI	ACTGG	2 cut(s)	26, 423
BseYI	CCCAGC	1 cut(s)	136
BshFI	GGCC	1 cut(s)	404
BshNI	GGYRCC	1 cut(s)	201
BsiHKCI	CYCGRG	1 cut(s)	128
BsiSI	CCGG	1 cut(s)	129
BslFI	GGGAC	1 cut(s)	145
BslI	CCNNNNNNNGG	1 cut(s)	128
BsmAI	GTCTC	1 cut(s)	182
BsmBI	CGTCTC	1 cut(s)	182
BsmFI	GGGAC	1 cut(s)	145
BsnI	GGCC	1 cut(s)	404
BsoBI	CYCGRG	1 cut(s)	128
Bsp143I	GATC	2 cut(s)	241, 265
Bsp1720I	GCTNAGC	1 cut(s)	423
BspACI	CCGC	1 cut(s)	306
BspANI	GGCC	1 cut(s)	404
BspCNI	CTCAG	2 cut(s)	245, 436
BspLI	GGNNCC	5 cut(s)	24, 133, 134, 203, 267
BspPI	GGATC	2 cut(s)	260, 273
BspT107I	GGYRCC	1 cut(s)	201
BsrI	ACTGG	2 cut(s)	26, 423
BssECI	CCNNGG	3 cut(s)	11, 128, 260
BssMI	GATC	2 cut(s)	241, 265
BssSI	CACGAG	1 cut(s)	327
Bst2BI	CACGAG	1 cut(s)	327
Bst2UI	CCWGG	2 cut(s)	261, 323
Bst4CI	ACNGT	2 cut(s)	62, 82
BstC8I	GCNNGC	1 cut(s)	95
BstDEI	CTNAG	2 cut(s)	232, 423
BstDSI	CCRYGG	1 cut(s)	11
BstF5I	GGATG	1 cut(s)	379
BstKTI	GATC	2 cut(s)	244, 268
BstMAI	GTCTC	1 cut(s)	182
BstMBI	GATC	2 cut(s)	241, 265
BstMWI	GCNNNNNNNGC	1 cut(s)	22
BstNI	CCWGG	2 cut(s)	261, 323
BstNSI	RCATGY	1 cut(s)	107
BstSCI	CCNGG	4 cut(s)	127, 128, 259, 321
BstSFI	CTRYAG	1 cut(s)	252
BstX2I	RGATCY	1 cut(s)	265
BstXI	CCANNNNNNTGG	1 cut(s)	412
BstYI	RGATCY	1 cut(s)	265
BsuRI	GGCC	1 cut(s)	404
BtgI	CCRYGG	1 cut(s)	11
BtsCI	GGATG	1 cut(s)	379
BtsIMutI	CAGTG	1 cut(s)	78
Cac8I	GCNNGC	1 cut(s)	95
CaiI	CAGNNNCTG	1 cut(s)	322
Cfr13I	GGNCC	1 cut(s)	132
Cfr9I	CCCGGG	1 cut(s)	128
Csp6I	GTAC	1 cut(s)	202
CviAII	CATG	3 cut(s)	19, 104, 406
CviQI	GTAC	1 cut(s)	202
DdeI	CTNAG	2 cut(s)	232, 423
DpnI	GATC	2 cut(s)	243, 267
DpnII	GATC	2 cut(s)	241, 265
Eco47I	GGWCC	1 cut(s)	132
Eco88I	CYCGRG	1 cut(s)	128
EcoO109I	RGGNCCY	1 cut(s)	132
EcoRII	CCWGG	2 cut(s)	259, 321
Esp3I	CGTCTC	1 cut(s)	182
FaeI	CATG	3 cut(s)	22, 107, 409
FaqI	GGGAC	1 cut(s)	145
FatI	CATG	3 cut(s)	18, 103, 405
FauI	CCCGC	1 cut(s)	313
FbaI	TGATCA	1 cut(s)	241
FokI	GGATG	1 cut(s)	386
GsaI	CCCAGC	1 cut(s)	140
HaeIII	GGCC	1 cut(s)	404
HapII	CCGG	1 cut(s)	129
Hin1II	CATG	3 cut(s)	22, 107, 409
HinfI	GANTC	2 cut(s)	173, 313
HpaII	CCGG	1 cut(s)	129
HphI	GGTGA	1 cut(s)	434
Hpy166II	GTNNAC	1 cut(s)	101
Hpy188III	TCNNGA	3 cut(s)	272, 329, 343
Hpy8I	GTNNAC	1 cut(s)	101
HpyCH4III	ACNGT	2 cut(s)	62, 82
HpyCH4V	TGCA	1 cut(s)	71
HpyF10VI	GCNNNNNNNGC	1 cut(s)	22
HpyF3I	CTNAG	2 cut(s)	232, 423
Hsp92II	CATG	3 cut(s)	22, 107, 409
KflI	GGGWCCC	1 cut(s)	132
KpnI	GGTACC	1 cut(s)	205
Ksp22I	TGATCA	1 cut(s)	241
Kzo9I	GATC	2 cut(s)	241, 265
LmnI	GCTCC	1 cut(s)	22
LweI	GCATC	1 cut(s)	390
MaeIII	GTNAC	1 cut(s)	106
MalI	GATC	2 cut(s)	243, 267
MboI	GATC	2 cut(s)	241, 265
MflI	RGATCY	1 cut(s)	265
MluCI	AATT	2 cut(s)	332, 389
MnlI	CCTC	6 cut(s)	132, 192, 239, 279, 364, 394
MseI	TTAA	1 cut(s)	150
MslI	CAYNNNNRTG	1 cut(s)	410
MspI	CCGG	1 cut(s)	129
MspR9I	CCNGG	4 cut(s)	129, 130, 261, 323
MvaI	CCWGG	2 cut(s)	261, 323
MwoI	GCNNNNNNNGC	1 cut(s)	22
NciI	CCSGG	2 cut(s)	129, 130
NdeII	GATC	2 cut(s)	241, 265
NlaIII	CATG	3 cut(s)	22, 107, 409
NlaIV	GGNNCC	5 cut(s)	24, 133, 134, 203, 267
NspI	RCATGY	1 cut(s)	107
PciI	ACATGT	1 cut(s)	103
PfeI	GAWTC	2 cut(s)	173, 313
PpuMI	RGGWCCY	1 cut(s)	132
PscI	ACATGT	1 cut(s)	103
Psp5II	RGGWCCY	1 cut(s)	132
Psp6I	CCWGG	2 cut(s)	259, 321
PspFI	CCCAGC	1 cut(s)	136
PspGI	CCWGG	2 cut(s)	259, 321
PspN4I	GGNNCC	5 cut(s)	24, 133, 134, 203, 267
PspPI	GGNCC	1 cut(s)	132
PspPPI	RGGWCCY	1 cut(s)	132
PstNI	CAGNNNCTG	1 cut(s)	322
PsuI	RGATCY	1 cut(s)	265
RsaI	GTAC	1 cut(s)	203
RsaNI	GTAC	1 cut(s)	202
RseI	CAYNNNNRTG	1 cut(s)	410
SaqAI	TTAA	1 cut(s)	150
Sau3AI	GATC	2 cut(s)	241, 265
Sau96I	GGNCC	1 cut(s)	132
ScrFI	CCNGG	4 cut(s)	129, 130, 261, 323
SetI	ASST	4 cut(s)	142, 203, 324, 436
SfaNI	GCATC	1 cut(s)	390
SfcI	CTRYAG	1 cut(s)	252
SinI	GGWCC	1 cut(s)	132
SmaI	CCCGGG	1 cut(s)	130
SmiMI	CAYNNNNRTG	1 cut(s)	410
SmlI	CTYRAG	2 cut(s)	196, 210
SmoI	CTYRAG	2 cut(s)	196, 210
Sse9I	AATT	2 cut(s)	332, 389
SsiI	CCGC	1 cut(s)	306
StyD4I	CCNGG	4 cut(s)	127, 128, 259, 321
TaaI	ACNGT	2 cut(s)	62, 82
TaqI	TCGA	1 cut(s)	57
TasI	AATT	2 cut(s)	332, 389
TfiI	GAWTC	2 cut(s)	173, 313
Tru1I	TTAA	1 cut(s)	150
Tru9I	TTAA	1 cut(s)	150
TscAI	CASTG	1 cut(s)	85
TspGWI	ACGGA	1 cut(s)	206
TspMI	CCCGGG	1 cut(s)	128
TspRI	CASTG	1 cut(s)	85
VpaK11BI	GGWCC	1 cut(s)	132
XapI	RAATTY	2 cut(s)	332, 389
XceI	RCATGY	1 cut(s)	107
XmaI	CCCGGG	1 cut(s)	128

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.