Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb2

Orthogroup ID

OG0005901

Physical Location & Seq

Genomic Coordinates Reverse (-)

27295883 .. 27296239

Gene Structure 357 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_2g37470.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 357 bp

ATGGCTGATGCTGTTGCACTCTCCACTACTAATGGGGATGATAAGGTGGAGATGAACTTTATTGGGTATACAAGCATTGTCTACTCTGGACTGTATGATGCCGATTTCGGCTGGGGAAAGCCTCTGTGGGTCGTTCCGGTTGGTCGCGAGGCCATTTCGGTCAATGAGGTTCGTTTGATGGATACAGGAGAATGGGGAAACAATGCAATTGAAGCTTGGATTAATCTACATGAAGAAGAAATGGAGTTGTTTCAAAGCAATCAAGAATTGCTTAATTTTGCTAGTCTCAAACTTATGAGTGACATTGGTAGGTATACCGACTTTATTTACCAATATCATGTACGAACCAAGTTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003727 GO:0003729 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006396 GO:0006397 GO:0006417 GO:0006725 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0009295 GO:0009451 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009579 GO:0009657 GO:0009658 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010239 GO:0010467 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010608 GO:0010628 GO:0016020 GO:0016043 GO:0016070 GO:0016071 GO:0016787 GO:0016788 GO:0019222 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031425 GO:0032268 GO:0032270 GO:0034248 GO:0034250 GO:0034357 GO:0034641 GO:0042644 GO:0042646 GO:0042651 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043412 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0045727 GO:0046483 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051246 GO:0051247 GO:0060255 GO:0065007 GO:0071704 GO:0071840 GO:0080090 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363 GO:2000112

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2 PPR_3

Protein Analysis

119

Amino Acids

13.48

Weight (kDa)

4.38

Isoelectric Point (pI)

12.64

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Transferase	PF02458	23 - 90	6.9e-11	Transferase family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0005901)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g37470 FvH4_2g37480 FvH4_2g37490 FvH4_2g37491 FvH4_2g37500
malus_domestica	MD15G1002200.v1.1
pyrus_communis	pycom15g00110
rosa_chinensis	RchiOBHm_Chr6g0304241 RchiOBHm_Chr6g0304251
rosa_laevigata	RLG00000010998 RLG00000010999 RLG00000011001 RLG00000011002 RLG00000011003
rosa_multiflora	Rmu_ssc0000218.1_g000016 Rmu_ssc0000218.1_g000018 Rmu_ssc0000218.1_g000021
rosa_roxburghii	Rroxscaffold_7G00163920 Rroxscaffold_7G00163940
rosa_rugosa	Rorug06G0329000 Rorug06G0329100
rosa_samantha	Rh6BG459700 Rh6BG459800 Rh6CG455300 Rh6CG455400 Rh6DG442300
rosa_wichuraiana	Rw6G038400 Rw6G038410

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	3 cut(s)	68, 81, 314
AccII	CGCG	1 cut(s)	147
AfaI	GTAC	1 cut(s)	342
AgsI	TTSAA	2 cut(s)	212, 254
AluBI	AGCT	1 cut(s)	215
AluI	AGCT	1 cut(s)	215
Alw26I	GTCTC	1 cut(s)	290
AoxI	GGCC	1 cut(s)	150
AseI	ATTAAT	1 cut(s)	222
BccI	CCATC	1 cut(s)	172
BciVI	GTATCC	1 cut(s)	175
BcoDI	GTCTC	1 cut(s)	290
BfaI	CTAG	1 cut(s)	282
BfuI	GTATCC	1 cut(s)	175
BmsI	GCATC	1 cut(s)	88
BsaWI	WCCGGW	1 cut(s)	136
BseGI	GGATG	1 cut(s)	43
BseYI	CCCAGC	1 cut(s)	111
Bsh1236I	CGCG	1 cut(s)	147
BshFI	GGCC	1 cut(s)	152
BsiSI	CCGG	1 cut(s)	137
BsmAI	GTCTC	1 cut(s)	290
BsnI	GGCC	1 cut(s)	152
Bsp68I	TCGCGA	1 cut(s)	147
BspANI	GGCC	1 cut(s)	152
BspFNI	CGCG	1 cut(s)	147
BssNAI	GTATAC	2 cut(s)	69, 315
Bst1107I	GTATAC	2 cut(s)	69, 315
Bst4CI	ACNGT	1 cut(s)	93
BstF5I	GGATG	1 cut(s)	43
BstFNI	CGCG	1 cut(s)	147
BstMAI	GTCTC	1 cut(s)	290
BstMWI	GCNNNNNNNGC	1 cut(s)	212
BstUI	CGCG	1 cut(s)	147
BstZ17I	GTATAC	2 cut(s)	69, 315
BsuI	GTATCC	1 cut(s)	175
BsuRI	GGCC	1 cut(s)	152
BtsCI	GGATG	1 cut(s)	43
BtuMI	TCGCGA	1 cut(s)	147
Csp6I	GTAC	1 cut(s)	341
CviAII	CATG	2 cut(s)	230, 338
CviJI	RGCY	5 cut(s)	5, 111, 121, 152, 215
CviKI_1	RGCY	5 cut(s)	5, 111, 121, 152, 215
CviQI	GTAC	1 cut(s)	341
FaeI	CATG	2 cut(s)	233, 341
FaiI	YATR	7 cut(s)	69, 96, 231, 296, 315, 339, 355
FalI	AAGNNNNNCTT	2 cut(s)	255, 287
FatI	CATG	2 cut(s)	229, 337
FblI	GTMKAC	3 cut(s)	68, 81, 314
FokI	GGATG	1 cut(s)	50
FspBI	CTAG	1 cut(s)	282
GsaI	CCCAGC	1 cut(s)	115
HaeIII	GGCC	1 cut(s)	152
HapII	CCGG	1 cut(s)	137
Hin1II	CATG	2 cut(s)	233, 341
HindIII	AAGCTT	1 cut(s)	213
HpaII	CCGG	1 cut(s)	137
Hpy166II	GTNNAC	3 cut(s)	69, 82, 315
Hpy188III	TCNNGA	3 cut(s)	87, 146, 263
Hpy8I	GTNNAC	3 cut(s)	69, 82, 315
HpyCH4III	ACNGT	1 cut(s)	93
HpyCH4V	TGCA	2 cut(s)	17, 206
HpyF10VI	GCNNNNNNNGC	1 cut(s)	212
Hsp92II	CATG	2 cut(s)	233, 341
LpnPI	CCDG	4 cut(s)	72, 97, 150, 171
LweI	GCATC	1 cut(s)	88
MaeI	CTAG	1 cut(s)	282
MaeIII	GTNAC	1 cut(s)	299
MboII	GAAGA	2 cut(s)	245, 248
MfeI	CAATTG	1 cut(s)	207
MluCI	AATT	3 cut(s)	207, 266, 274
MnlI	CCTC	3 cut(s)	132, 142, 160
MseI	TTAA	2 cut(s)	222, 273
MspI	CCGG	1 cut(s)	137
MunI	CAATTG	1 cut(s)	207
MvnI	CGCG	1 cut(s)	147
MwoI	GCNNNNNNNGC	1 cut(s)	212
NlaIII	CATG	2 cut(s)	233, 341
NmuCI	GTSAC	1 cut(s)	299
NruI	TCGCGA	1 cut(s)	147
PshBI	ATTAAT	1 cut(s)	222
PspFI	CCCAGC	1 cut(s)	111
RruI	TCGCGA	1 cut(s)	147
RsaI	GTAC	1 cut(s)	342
RsaNI	GTAC	1 cut(s)	341
SaqAI	TTAA	2 cut(s)	222, 273
SetI	ASST	4 cut(s)	48, 171, 217, 314
SfaNI	GCATC	1 cut(s)	88
Sse9I	AATT	3 cut(s)	207, 266, 274
SspMI	CTAG	1 cut(s)	282
TaaI	ACNGT	1 cut(s)	93
TaqII	GACCGA	1 cut(s)	148
TasI	AATT	3 cut(s)	207, 266, 274
Tru1I	TTAA	2 cut(s)	222, 273
Tru9I	TTAA	2 cut(s)	222, 273
TseFI	GTSAC	1 cut(s)	299
Tsp45I	GTSAC	1 cut(s)	299
TspDTI	ATGAA	2 cut(s)	68, 246
VspI	ATTAAT	1 cut(s)	222
XmiI	GTMKAC	3 cut(s)	68, 81, 314
XspI	CTAG	1 cut(s)	282

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.