Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb2

Orthogroup ID

OG0005901

Physical Location & Seq

Genomic Coordinates Reverse (-)

27302172 .. 27305125

Gene Structure 2954 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_2g37491.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 882 bp

ATGGAGGTCAGAATATTGTCCAAGGAGTACATCAAGCCCTCTTCCCCAACACCTCCACACTTAAGCACTCACAAATTTTCTCTCTTAGATCACTTGATGCCTCCAGTTTATATTCCCATGATCTTGTTCTATCGTCCTGTTTCACCTCTCAATACCACTAGCAGTGAAAGATCACAAGCACTCAAACAATCTCTCTCGGAAACCCTGACTCGCTTCTATCCGCTTGCAGGAAGAATCAGAAGCAATCTTTGCATAGATTGCAACGATGAAGGAGCTTGTTACATAGAGGCTAAAGTTGAGTCACATGACCTCTCGGAGTTTCTGCAGCATCCTGATTTGTCACTACTCCCAAAGCTTCTTCCACCTTTCAACAGTATGCTTGATCACAGTGGTCAACTTAAAAATACCACAACCGCCCCCGGAGGAGGAGCTGATGTAGTCATGATACAAGTAACCAACTTCGCCTGCGGCGGCCTTGTGATTGGAGTGTATGTTTCTCACATGATTGTTGATGGTGTTGTTGGCCAGAAAGGCTACAAATGTTATCATCCTCAGTCCCAAAGGTTTTATGTCACCATGGATGTTACTTTCAGTGAAGATGTATGTTATTTCCTGCCTCCTGTGACTCCTCGTCAGGGGGAGAGGTTTAGTTATTATGAAGATTTGTTTGTTGGACATAATGAGAGTGTGACACCAGAAGTCACAAGGGTGGAGTGTGTAGCGACAGAGCTTGAAAAGAACGACAAAATTTCACCAAATGGTCAGCCCAACTCTACAGATCAGTCATCCGAGATAGAAACAGAAAAAAGTGGAATCAGTGACACACCAGTTCAATCTGAATGTGTCACATCCCGACCCTTATATTTTTACCTCATTTACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Transferase

Protein Analysis

294

Amino Acids

32.8

Weight (kDa)

5.27

Isoelectric Point (pI)

58.27

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Transferase	PF02458	1 - 173	3e-39	Transferase family
SH3_retrovirus	PF25597	175 - 202	1.2e-06	Retroviral polymerase SH3-like domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005901)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g37470 FvH4_2g37480 FvH4_2g37490 FvH4_2g37491 FvH4_2g37500
malus_domestica	MD15G1002200.v1.1
pyrus_communis	pycom15g00110
rosa_chinensis	RchiOBHm_Chr6g0304241 RchiOBHm_Chr6g0304251
rosa_laevigata	RLG00000010998 RLG00000010999 RLG00000011001 RLG00000011002 RLG00000011003
rosa_multiflora	Rmu_ssc0000218.1_g000016 Rmu_ssc0000218.1_g000018 Rmu_ssc0000218.1_g000021
rosa_roxburghii	Rroxscaffold_7G00163920 Rroxscaffold_7G00163940
rosa_rugosa	Rorug06G0329000 Rorug06G0329100
rosa_samantha	Rh6BG459700 Rh6BG459800 Rh6CG455300 Rh6CG455400 Rh6DG442300
rosa_wichuraiana	Rw6G038400 Rw6G038410

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	4 cut(s)	221, 414, 468, 471
AcoI	YGGCCR	1 cut(s)	523
AcsI	RAATTY	2 cut(s)	74, 747
AfaI	GTAC	1 cut(s)	29
AfiI	CCNNNNNNNGG	3 cut(s)	227, 425, 635
AflII	CTTAAG	1 cut(s)	61
AgsI	TTSAA	3 cut(s)	370, 734, 833
AhdI	GACNNNNNGTC	1 cut(s)	630
AleI	CACNNNNGTG	1 cut(s)	707
AluBI	AGCT	4 cut(s)	275, 355, 431, 730
AluI	AGCT	4 cut(s)	275, 355, 431, 730
AoxI	GGCC	2 cut(s)	472, 523
ApeKI	GCWGC	1 cut(s)	325
ApoI	RAATTY	2 cut(s)	74, 747
AsuC2I	CCSGG	1 cut(s)	420
AsuHPI	GGTGA	3 cut(s)	135, 565, 744
BalI	TGGCCA	1 cut(s)	525
BbvI	GCAGC	1 cut(s)	337
BccI	CCATC	1 cut(s)	506
BclI	TGATCA	1 cut(s)	382
BcnI	CCSGG	1 cut(s)	420
BfaI	CTAG	2 cut(s)	159, 880
BfmI	CTRYAG	2 cut(s)	323, 774
BfrI	CTTAAG	1 cut(s)	61
BglI	GCCNNNNNGGC	1 cut(s)	531
BisI	GCNGC	3 cut(s)	326, 469, 472
BlsI	GCNGC	3 cut(s)	327, 470, 473
Bme1390I	CCNGG	1 cut(s)	420
BmeRI	GACNNNNNGTC	1 cut(s)	630
BmrFI	CCNGG	1 cut(s)	420
BmsI	GCATC	2 cut(s)	87, 337
BpmI	CTGGAG	1 cut(s)	87
BpuMI	CCSGG	1 cut(s)	420
BsaJI	CCNNGG	3 cut(s)	21, 418, 576
BsaXI	ACNNNNNCTCC	4 cut(s)	420, 450, 477, 507
Bsc4I	CCNNNNNNNGG	3 cut(s)	227, 425, 635
Bse1I	ACTGG	2 cut(s)	104, 827
BseDI	CCNNGG	3 cut(s)	21, 418, 576
BseGI	GGATG	5 cut(s)	328, 547, 586, 785, 848
BseLI	CCNNNNNNNGG	3 cut(s)	227, 425, 635
BseMII	CTCAG	1 cut(s)	566
BseNI	ACTGG	2 cut(s)	104, 827
BseRI	GAGGAG	3 cut(s)	438, 441, 618
BseXI	GCAGC	1 cut(s)	337
BshFI	GGCC	2 cut(s)	474, 525
BsiSI	CCGG	1 cut(s)	420
BslFI	GGGAC	1 cut(s)	541
BslI	CCNNNNNNNGG	3 cut(s)	227, 425, 635
BsmFI	GGGAC	1 cut(s)	541
BsnI	GGCC	2 cut(s)	474, 525
Bsp143I	GATC	5 cut(s)	88, 120, 170, 382, 778
Bsp19I	CCATGG	1 cut(s)	576
BspACI	CCGC	4 cut(s)	221, 414, 468, 471
BspANI	GGCC	2 cut(s)	474, 525
BspCNI	CTCAG	1 cut(s)	565
BspHI	TCATGA	1 cut(s)	441
BspMAI	CTGCAG	1 cut(s)	327
BspTI	CTTAAG	1 cut(s)	61
BsrI	ACTGG	2 cut(s)	104, 827
BssECI	CCNNGG	3 cut(s)	21, 418, 576
BssMI	GATC	5 cut(s)	88, 120, 170, 382, 778
BssT1I	CCWWGG	2 cut(s)	21, 576
Bst4CI	ACNGT	2 cut(s)	374, 389
Bst6I	CTCTTC	1 cut(s)	46
BstAFI	CTTAAG	1 cut(s)	61
BstAPI	GCANNNNNTGC	2 cut(s)	249, 258
BstC8I	GCNNGC	2 cut(s)	225, 466
BstDEI	CTNAG	2 cut(s)	85, 552
BstDSI	CCRYGG	1 cut(s)	576
BstF5I	GGATG	5 cut(s)	328, 547, 586, 785, 848
BstKTI	GATC	5 cut(s)	91, 123, 173, 385, 781
BstMBI	GATC	5 cut(s)	88, 120, 170, 382, 778
BstMWI	GCNNNNNNNGC	3 cut(s)	249, 258, 531
BstSCI	CCNGG	1 cut(s)	418
BstSFI	CTRYAG	2 cut(s)	323, 774
BstV1I	GCAGC	1 cut(s)	337
BsuRI	GGCC	2 cut(s)	474, 525
BtgI	CCRYGG	1 cut(s)	576
BtsCI	GGATG	5 cut(s)	328, 547, 586, 785, 848
BtsI	GCAGTG	1 cut(s)	169
BtsIMutI	CAGTG	4 cut(s)	169, 394, 598, 823
Cac8I	GCNNGC	2 cut(s)	225, 466
CciI	TCATGA	1 cut(s)	441
Csp6I	GTAC	1 cut(s)	28
CviAII	CATG	5 cut(s)	118, 305, 442, 502, 577
CviQI	GTAC	1 cut(s)	28
DdeI	CTNAG	2 cut(s)	85, 552
DpnI	GATC	5 cut(s)	90, 122, 172, 384, 780
DpnII	GATC	5 cut(s)	88, 120, 170, 382, 778
DriI	GACNNNNNGTC	1 cut(s)	630
EaeI	YGGCCR	1 cut(s)	523
Eam1104I	CTCTTC	1 cut(s)	46
Eam1105I	GACNNNNNGTC	1 cut(s)	630
EarI	CTCTTC	1 cut(s)	46
Eco130I	CCWWGG	2 cut(s)	21, 576
EcoT14I	CCWWGG	2 cut(s)	21, 576
ErhI	CCWWGG	2 cut(s)	21, 576
FaeI	CATG	5 cut(s)	121, 308, 445, 505, 580
FaqI	GGGAC	1 cut(s)	541
FatI	CATG	5 cut(s)	117, 304, 441, 501, 576
FbaI	TGATCA	1 cut(s)	382
Fnu4HI	GCNGC	3 cut(s)	326, 469, 472
FokI	GGATG	5 cut(s)	315, 534, 593, 772, 835
Fsp4HI	GCNGC	3 cut(s)	326, 469, 472
FspBI	CTAG	2 cut(s)	159, 880
GluI	GCNGC	3 cut(s)	326, 469, 472
GsuI	CTGGAG	1 cut(s)	87
HaeIII	GGCC	2 cut(s)	474, 525
HapII	CCGG	1 cut(s)	420
Hin1II	CATG	5 cut(s)	121, 308, 445, 505, 580
HincII	GTYRAC	1 cut(s)	395
HindII	GTYRAC	1 cut(s)	395
HindIII	AAGCTT	1 cut(s)	353
HinfI	GANTC	5 cut(s)	208, 234, 299, 625, 813
HpaII	CCGG	1 cut(s)	420
HphI	GGTGA	3 cut(s)	135, 565, 744
Hpy166II	GTNNAC	1 cut(s)	395
Hpy188I	TCNGA	6 cut(s)	11, 199, 239, 316, 790, 838
Hpy188III	TCNNGA	3 cut(s)	332, 442, 852
Hpy8I	GTNNAC	1 cut(s)	395
HpyAV	CCTTC	1 cut(s)	263
HpyCH4III	ACNGT	2 cut(s)	374, 389
HpyCH4V	TGCA	4 cut(s)	227, 252, 261, 325
HpyF10VI	GCNNNNNNNGC	3 cut(s)	249, 258, 531
HpyF3I	CTNAG	2 cut(s)	85, 552
Hsp92II	CATG	5 cut(s)	121, 308, 445, 505, 580
Ksp22I	TGATCA	1 cut(s)	382
Kzo9I	GATC	5 cut(s)	88, 120, 170, 382, 778
LmnI	GCTCC	2 cut(s)	272, 428
Lsp1109I	GCAGC	1 cut(s)	337
LweI	GCATC	2 cut(s)	87, 337
MaeI	CTAG	2 cut(s)	159, 880
MalI	GATC	5 cut(s)	90, 122, 172, 384, 780
MboI	GATC	5 cut(s)	88, 120, 170, 382, 778
MboII	GAAGA	5 cut(s)	33, 243, 350, 608, 671
MlsI	TGGCCA	1 cut(s)	525
MluCI	AATT	2 cut(s)	74, 747
MluNI	TGGCCA	1 cut(s)	525
MlyI	GAGTC	3 cut(s)	202, 308, 619
MmeI	TCCRAC	1 cut(s)	652
Mox20I	TGGCCA	1 cut(s)	525
MscI	TGGCCA	1 cut(s)	525
MseI	TTAA	2 cut(s)	62, 399
MslI	CAYNNNNRTG	1 cut(s)	707
Msp20I	TGGCCA	1 cut(s)	525
MspCI	CTTAAG	1 cut(s)	61
MspI	CCGG	1 cut(s)	420
MspR9I	CCNGG	1 cut(s)	420
MwoI	GCNNNNNNNGC	3 cut(s)	249, 258, 531
NciI	CCSGG	1 cut(s)	420
NcoI	CCATGG	1 cut(s)	576
NdeII	GATC	5 cut(s)	88, 120, 170, 382, 778
NlaIII	CATG	5 cut(s)	121, 308, 445, 505, 580
NmuCI	GTSAC	8 cut(s)	300, 339, 571, 622, 688, 700, 818, 844
OliI	CACNNNNGTG	1 cut(s)	707
PagI	TCATGA	1 cut(s)	441
PfeI	GAWTC	2 cut(s)	234, 813
PkrI	GCNGC	3 cut(s)	327, 470, 473
PleI	GAGTC	3 cut(s)	202, 307, 619
PpsI	GAGTC	3 cut(s)	202, 307, 619
PstI	CTGCAG	1 cut(s)	327
RsaI	GTAC	1 cut(s)	29
RsaNI	GTAC	1 cut(s)	28
RseI	CAYNNNNRTG	1 cut(s)	707
SaqAI	TTAA	2 cut(s)	62, 399
SatI	GCNGC	3 cut(s)	326, 469, 472
Sau3AI	GATC	5 cut(s)	88, 120, 170, 382, 778
SchI	GAGTC	3 cut(s)	202, 308, 619
ScrFI	CCNGG	1 cut(s)	420
SfaNI	GCATC	2 cut(s)	87, 337
SfcI	CTRYAG	2 cut(s)	323, 774
SmiMI	CAYNNNNRTG	1 cut(s)	707
SmlI	CTYRAG	1 cut(s)	61
SmoI	CTYRAG	1 cut(s)	61
Sse9I	AATT	2 cut(s)	74, 747
SsiI	CCGC	4 cut(s)	221, 414, 468, 471
SspI	AATATT	1 cut(s)	15
SspMI	CTAG	2 cut(s)	159, 880
StyD4I	CCNGG	1 cut(s)	418
StyI	CCWWGG	2 cut(s)	21, 576
TaaI	ACNGT	2 cut(s)	374, 389
TasI	AATT	2 cut(s)	74, 747
TatI	WGTACW	1 cut(s)	27
TauI	GCSGC	2 cut(s)	471, 474
TfiI	GAWTC	2 cut(s)	234, 813
Tru1I	TTAA	2 cut(s)	62, 399
Tru9I	TTAA	2 cut(s)	62, 399
TscAI	CASTG	4 cut(s)	169, 394, 598, 823
TseFI	GTSAC	8 cut(s)	300, 339, 571, 622, 688, 700, 818, 844
TseI	GCWGC	1 cut(s)	325
Tsp45I	GTSAC	8 cut(s)	300, 339, 571, 622, 688, 700, 818, 844
TspDTI	ATGAA	2 cut(s)	282, 672
TspRI	CASTG	4 cut(s)	169, 394, 598, 823
Vha464I	CTTAAG	1 cut(s)	61
XapI	RAATTY	2 cut(s)	74, 747
XspI	CTAG	2 cut(s)	159, 880

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.