Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6D

Orthogroup ID

OG0005901

Physical Location & Seq

Genomic Coordinates Forward (+)

61776699 .. 61786952

Gene Structure 10254 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6DG442300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1554 bp

ATGGAGGTCCAAATACTGTCCAAGGAGTACATCAAGCCCTCTTCCCCAACGCCTCCACACATAAGCACATACAGATTTTCCCTCTTGGATCACGTAATGCCTCCAGTTTATGTTCCTATGGTCTTGTTCTATCCTCCTGTTTCACCTCTCAGTACTACTAGAAGTGAAAGATCACAGGCACTAAAACAATCTCTCTCGGAAACCCTGACTCGCTTTTACCCACTAGCTGGTAGAATCAGAGACTACCTTTGCATCGACTGCAACGACGAAGGAGCTTATTACATAGAGGCCGATGTCAAGTCTCATGACCTCTCGGAGTTTCTGCAGCATCCTGACTTGTCAGTACTCCCTAAGCTTCTCCCAACTTTCAACAGTTTGCTTGATTACACTGATCTAATTTCAAATGCCACCACTGGCCTAGAAGGAGAAGGAGGTGCTGATGTAGTCATGATCCAAGTGACTAACTTTGCCTGCGGCGGGTTTGTGATTGGAGTGTTTGTTTCTCATATGATTGTTGATGGCATTGCCATCAGCAATTTTCTTAAAGCTTGGGCTGCAGCCACTGCACAGAGTCTATCAGGTCAGAGTGTTCATGTATTGCCTGATTTTGATGCTGCAACATTGTTCCCTCCTATTCTTGATGAACAAGGTGCAATAGCAAATGATCATCAGAGAGAACAGGAGTTAGAGTTGTCAAGCTTGGTGAGCAAGATGAGGGAAGCAACATCGAAATTCAATGGTGACTTGGTGGCCAAGCTCCAAGGTCAAGATGGGTTAGCCACTATTAGTAAGGTTTTCCAAGACATGGCCGAGGCTATCACACTCTCCACTAATGGGGATGATCAGGTGGAGATGAACTTTATTGGGTATACCAGCATTGCCTACTCTGGAGTGTATGATGCCGATTTCGGCTGGGGAAAGCCTCTGTGGGTCGTTCCAGTTCATGAGCCCTGTCACGAGGCCTTTTCGGTCAATGTGTTCCTTCCATCCGGTGCAAGTTTCACTGAATCAGCAGGTCCAGGAGCTCACTTAGCTATGATCCAAGTCACCAACTTTGCATGCGGTGGTTTTGCTGTTGGTGTCTTGGTTTCACATATGGTTGTTGATGGAACTGCATTGAGCACTTTTCTTAAAGCTTGGGCTGCAAGGTTTCGTAAGGCTCCTGAATCTGATATATCTGCAGCTACTTCATGCAGCAGCAACGCTCAAGAGTTAGAACTGGGAAGCTTGGTGATTCGGATTAGGGAAGCAATAAAGAAACTCGATGGCAATGTTGTCCAAAGCCTACAAGGGGATGGAGGGGTCGCCAAAATGTGTGAGCTTTCAAAAGAGATGGGTGATACTTGCTCTGATGCAGCATCTGATGGTGCTTTGGATTATATATGTTTTACCAGCTGGTGCAACTTTGATACGAGGTCTCGTGATGGAGTTGAGGCCTGGATTTATCTAGGTGAACAAGAGATGACTATATTAGAACATGATGACAGCTTTCTTGCTTTTGCTTCTATTGATCATAGTCCTCTTGAACTTGGTAACACTGTTTCTCATCCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Transferase

Protein Analysis

517

Amino Acids

56.05

Weight (kDa)

4.59

Isoelectric Point (pI)

35.03

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Transferase	PF02458	1 - 242	1.1e-46	Transferase family
Transferase	PF02458	343 - 389	2e-12	Transferase family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005901)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g37470 FvH4_2g37480 FvH4_2g37490 FvH4_2g37491 FvH4_2g37500
malus_domestica	MD15G1002200.v1.1
pyrus_communis	pycom15g00110
rosa_chinensis	RchiOBHm_Chr6g0304241 RchiOBHm_Chr6g0304251
rosa_laevigata	RLG00000010998 RLG00000010999 RLG00000011001 RLG00000011002 RLG00000011003
rosa_multiflora	Rmu_ssc0000218.1_g000016 Rmu_ssc0000218.1_g000018 Rmu_ssc0000218.1_g000021
rosa_roxburghii	Rroxscaffold_7G00163920 Rroxscaffold_7G00163940
rosa_rugosa	Rorug06G0329000 Rorug06G0329100
rosa_samantha	Rh6BG459700 Rh6BG459800 Rh6CG455300 Rh6CG455400 Rh6DG442300
rosa_wichuraiana	Rw6G038400 Rw6G038410

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	1004
AccB7I	CCANNNNNTGG	2 cut(s)	227, 805
AccI	GTMKAC	1 cut(s)	869
AciI	CCGC	3 cut(s)	474, 477, 1062
AclWI	GGATC	3 cut(s)	96, 445, 1033
AcoI	YGGCCR	2 cut(s)	750, 807
AcsI	RAATTY	1 cut(s)	731
AfaI	GTAC	3 cut(s)	29, 154, 345
AfiI	CCNNNNNNNGG	5 cut(s)	227, 477, 805, 834, 1291
AgsI	TTSAA	5 cut(s)	370, 402, 736, 1326, 1526
AjnI	CCWGG	2 cut(s)	1018, 1436
Alw21I	GWGCWC	2 cut(s)	1027, 1124
Alw26I	GTCTC	3 cut(s)	234, 306, 1422
AlwI	GGATC	3 cut(s)	96, 445, 1033
AlwNI	CAGNNNCTG	2 cut(s)	563, 1361
AoxI	GGCC	6 cut(s)	288, 415, 750, 807, 960, 1434
ApeKI	GCWGC	9 cut(s)	325, 554, 557, 614, 1142, 1181, 1194, 1197, 1355
ApoI	RAATTY	1 cut(s)	731
AspS9I	GGNCC	2 cut(s)	7, 1016
AsuHPI	GGTGA	7 cut(s)	135, 715, 752, 1039, 1243, 1349, 1463
AvaII	GGWCC	2 cut(s)	7, 1016
BalI	TGGCCA	1 cut(s)	752
BanII	GRGCYC	2 cut(s)	951, 1027
BauI	CACGAG	2 cut(s)	956, 1419
Bbv12I	GWGCWC	2 cut(s)	1027, 1124
BbvI	GCAGC	9 cut(s)	337, 541, 569, 601, 1129, 1193, 1206, 1209, 1367
BciT130I	CCWGG	2 cut(s)	1020, 1438
BclI	TGATCA	3 cut(s)	664, 841, 1510
BcoDI	GTCTC	3 cut(s)	234, 306, 1422
BfaI	CTAG	4 cut(s)	159, 224, 419, 1448
BfmI	CTRYAG	3 cut(s)	323, 555, 1179
BfuAI	ACCTGC	1 cut(s)	1004
BmcAI	AGTACT	2 cut(s)	154, 345
Bme1390I	CCNGG	2 cut(s)	1020, 1438
Bme18I	GGWCC	2 cut(s)	7, 1016
BmgT120I	GGNCC	2 cut(s)	7, 1016
BmiI	GGNNCC	1 cut(s)	1161
BmrFI	CCNGG	2 cut(s)	1020, 1438
BmrI	ACTGGG	1 cut(s)	1229
BmsI	GCATC	6 cut(s)	261, 337, 601, 889, 1342, 1367
BmuI	ACTGGG	1 cut(s)	1229
BpmI	CTGGAG	2 cut(s)	87, 909
Bpu10I	CCTNAGC	1 cut(s)	351
BpuEI	CTTGAG	1 cut(s)	1191
BsaAI	YACGTR	1 cut(s)	94
BsaI	GGTCTC	1 cut(s)	1422
BsaJI	CCNNGG	3 cut(s)	21, 760, 810
BsaWI	WCCGGW	1 cut(s)	989
BsaXI	ACNNNNNCTCC	4 cut(s)	483, 513, 674, 704
Bsc4I	CCNNNNNNNGG	5 cut(s)	227, 477, 805, 834, 1291
Bse1I	ACTGG	4 cut(s)	104, 418, 938, 1224
Bse3DI	GCAATG	3 cut(s)	522, 876, 1276
BseBI	CCWGG	2 cut(s)	1020, 1438
BseDI	CCNNGG	3 cut(s)	21, 760, 810
BseGI	GGATG	5 cut(s)	328, 844, 986, 1300, 1546
BseLI	CCNNNNNNNGG	5 cut(s)	227, 477, 805, 834, 1291
BseMI	GCAATG	3 cut(s)	522, 876, 1276
BseMII	CTCAG	1 cut(s)	163
BseNI	ACTGG	4 cut(s)	104, 418, 938, 1224
BseXI	GCAGC	9 cut(s)	337, 541, 569, 601, 1129, 1193, 1206, 1209, 1367
BseYI	CCCAGC	1 cut(s)	912
BsgI	GTGCAG	1 cut(s)	549
BshFI	GGCC	6 cut(s)	290, 417, 752, 809, 962, 1436
BsiHKAI	GWGCWC	2 cut(s)	1027, 1124
BsiSI	CCGG	1 cut(s)	990
BslI	CCNNNNNNNGG	5 cut(s)	227, 477, 805, 834, 1291
BsmAI	GTCTC	3 cut(s)	234, 306, 1422
BsnI	GGCC	6 cut(s)	290, 417, 752, 809, 962, 1436
Bso31I	GGTCTC	1 cut(s)	1422
Bsp1286I	GDGCHC	3 cut(s)	951, 1027, 1124
Bsp143I	GATC	8 cut(s)	88, 170, 391, 450, 664, 841, 1038, 1510
BspACI	CCGC	3 cut(s)	474, 477, 1062
BspANI	GGCC	6 cut(s)	290, 417, 752, 809, 962, 1436
BspCNI	CTCAG	1 cut(s)	162
BspHI	TCATGA	3 cut(s)	304, 447, 943
BspLI	GGNNCC	1 cut(s)	1161
BspMAI	CTGCAG	3 cut(s)	327, 559, 1183
BspMI	ACCTGC	1 cut(s)	1004
BspPI	GGATC	3 cut(s)	96, 445, 1033
BspTNI	GGTCTC	1 cut(s)	1422
BsrDI	GCAATG	3 cut(s)	522, 876, 1276
BsrI	ACTGG	4 cut(s)	104, 418, 938, 1224
BssECI	CCNNGG	3 cut(s)	21, 760, 810
BssMI	GATC	8 cut(s)	88, 170, 391, 450, 664, 841, 1038, 1510
BssNAI	GTATAC	1 cut(s)	870
BssSI	CACGAG	2 cut(s)	956, 1419
BssT1I	CCWWGG	2 cut(s)	21, 760
Bst1107I	GTATAC	1 cut(s)	870
Bst2BI	CACGAG	2 cut(s)	956, 1419
Bst2UI	CCWGG	2 cut(s)	1020, 1438
Bst4CI	ACNGT	3 cut(s)	18, 374, 1540
Bst6I	CTCTTC	1 cut(s)	46
BstAPI	GCANNNNNTGC	2 cut(s)	258, 563
BstBAI	YACGTR	1 cut(s)	94
BstC8I	GCNNGC	2 cut(s)	472, 1060
BstDEI	CTNAG	3 cut(s)	149, 351, 1030
BstF5I	GGATG	5 cut(s)	328, 844, 986, 1300, 1546
BstKTI	GATC	8 cut(s)	91, 173, 394, 453, 667, 844, 1041, 1513
BstMAI	GTCTC	3 cut(s)	234, 306, 1422
BstMBI	GATC	8 cut(s)	88, 170, 391, 450, 664, 841, 1038, 1510
BstMWI	GCNNNNNNNGC	6 cut(s)	258, 554, 563, 705, 1031, 1142
BstNI	CCWGG	2 cut(s)	1020, 1438
BstNSI	RCATGY	1 cut(s)	1062
BstSCI	CCNGG	2 cut(s)	1018, 1436
BstSFI	CTRYAG	3 cut(s)	323, 555, 1179
BstV1I	GCAGC	9 cut(s)	337, 541, 569, 601, 1129, 1193, 1206, 1209, 1367
BstZ17I	GTATAC	1 cut(s)	870
BsuRI	GGCC	6 cut(s)	290, 417, 752, 809, 962, 1436
BtsCI	GGATG	5 cut(s)	328, 844, 986, 1300, 1546
BtsI	GCAGTG	1 cut(s)	561
BtsIMutI	CAGTG	5 cut(s)	387, 411, 561, 1002, 1536
BveI	ACCTGC	1 cut(s)	1004
Cac8I	GCNNGC	2 cut(s)	472, 1060
CaiI	CAGNNNCTG	2 cut(s)	563, 1361
CciI	TCATGA	3 cut(s)	304, 447, 943
Cfr13I	GGNCC	2 cut(s)	7, 1016
Csp6I	GTAC	3 cut(s)	28, 153, 344
CviAII	CATG	9 cut(s)	305, 448, 593, 805, 944, 1059, 1191, 1478, 1551
CviQI	GTAC	3 cut(s)	28, 153, 344
DdeI	CTNAG	3 cut(s)	149, 351, 1030
DpnI	GATC	8 cut(s)	90, 172, 393, 452, 666, 843, 1040, 1512
DpnII	GATC	8 cut(s)	88, 170, 391, 450, 664, 841, 1038, 1510
EaeI	YGGCCR	2 cut(s)	750, 807
Eam1104I	CTCTTC	1 cut(s)	46
EarI	CTCTTC	1 cut(s)	46
Ecl136II	GAGCTC	1 cut(s)	1025
Eco130I	CCWWGG	2 cut(s)	21, 760
Eco147I	AGGCCT	2 cut(s)	962, 1436
Eco24I	GRGCYC	2 cut(s)	951, 1027
Eco31I	GGTCTC	1 cut(s)	1422
Eco47I	GGWCC	2 cut(s)	7, 1016
Eco53kI	GAGCTC	1 cut(s)	1025
EcoICRI	GAGCTC	1 cut(s)	1025
EcoRII	CCWGG	2 cut(s)	1018, 1436
EcoT14I	CCWWGG	2 cut(s)	21, 760
EcoT38I	GRGCYC	2 cut(s)	951, 1027
ErhI	CCWWGG	2 cut(s)	21, 760
FaeI	CATG	9 cut(s)	308, 451, 596, 808, 947, 1062, 1194, 1481, 1554
FatI	CATG	9 cut(s)	304, 447, 592, 804, 943, 1058, 1190, 1477, 1550
FauI	CCCGC	1 cut(s)	470
FauNDI	CATATG	2 cut(s)	507, 1095
FbaI	TGATCA	3 cut(s)	664, 841, 1510
FblI	GTMKAC	1 cut(s)	869
FokI	GGATG	5 cut(s)	315, 851, 973, 1307, 1533
FriOI	GRGCYC	2 cut(s)	951, 1027
FspBI	CTAG	4 cut(s)	159, 224, 419, 1448
GsaI	CCCAGC	1 cut(s)	916
GsuI	CTGGAG	2 cut(s)	87, 909
HaeIII	GGCC	6 cut(s)	290, 417, 752, 809, 962, 1436
HapII	CCGG	1 cut(s)	990
Hin1II	CATG	9 cut(s)	308, 451, 596, 808, 947, 1062, 1194, 1481, 1554
HindIII	AAGCTT	5 cut(s)	353, 546, 697, 1134, 1225
HinfI	GANTC	6 cut(s)	208, 234, 571, 1007, 1166, 1234
HpaII	CCGG	1 cut(s)	990
HphI	GGTGA	7 cut(s)	135, 715, 752, 1039, 1243, 1349, 1463
Hpy166II	GTNNAC	2 cut(s)	870, 1454
Hpy188I	TCNGA	9 cut(s)	199, 239, 316, 585, 672, 1171, 1239, 1351, 1363
Hpy8I	GTNNAC	2 cut(s)	870, 1454
Hpy99I	CGWCG	1 cut(s)	269
HpyAV	CCTTC	4 cut(s)	263, 416, 422, 992
HpyCH4III	ACNGT	3 cut(s)	18, 374, 1540
HpyCH4IV	ACGT	1 cut(s)	93
HpyF10VI	GCNNNNNNNGC	6 cut(s)	258, 554, 563, 705, 1031, 1142
HpyF3I	CTNAG	3 cut(s)	149, 351, 1030
HpySE526I	ACGT	1 cut(s)	93
Hsp92II	CATG	9 cut(s)	308, 451, 596, 808, 947, 1062, 1194, 1481, 1554
Ksp22I	TGATCA	3 cut(s)	664, 841, 1510
Kzo9I	GATC	8 cut(s)	88, 170, 391, 450, 664, 841, 1038, 1510
LmnI	GCTCC	4 cut(s)	272, 762, 1022, 1165
Lsp1109I	GCAGC	9 cut(s)	337, 541, 569, 601, 1129, 1193, 1206, 1209, 1367
LweI	GCATC	6 cut(s)	261, 337, 601, 889, 1342, 1367
MaeI	CTAG	4 cut(s)	159, 224, 419, 1448
MaeII	ACGT	1 cut(s)	93
MaeIII	GTNAC	5 cut(s)	457, 740, 953, 1045, 1532
MalI	GATC	8 cut(s)	90, 172, 393, 452, 666, 843, 1040, 1512
MboI	GATC	8 cut(s)	88, 170, 391, 450, 664, 841, 1038, 1510
MboII	GAAGA	1 cut(s)	33
MhlI	GDGCHC	3 cut(s)	951, 1027, 1124
MlsI	TGGCCA	1 cut(s)	752
MluCI	AATT	3 cut(s)	396, 535, 731
MluNI	TGGCCA	1 cut(s)	752
MlyI	GAGTC	2 cut(s)	202, 580
Mox20I	TGGCCA	1 cut(s)	752
MscI	TGGCCA	1 cut(s)	752
MseI	TTAA	2 cut(s)	543, 1131
Msp20I	TGGCCA	1 cut(s)	752
MspA1I	CMGCKG	1 cut(s)	1395
MspI	CCGG	1 cut(s)	990
MspR9I	CCNGG	2 cut(s)	1020, 1438
MvaI	CCWGG	2 cut(s)	1020, 1438
MwoI	GCNNNNNNNGC	6 cut(s)	258, 554, 563, 705, 1031, 1142
NdeI	CATATG	2 cut(s)	507, 1095
NdeII	GATC	8 cut(s)	88, 170, 391, 450, 664, 841, 1038, 1510
NlaIII	CATG	9 cut(s)	308, 451, 596, 808, 947, 1062, 1194, 1481, 1554
NlaIV	GGNNCC	1 cut(s)	1161
NmeAIII	GCCGAG	1 cut(s)	835
NmuCI	GTSAC	4 cut(s)	457, 740, 953, 1045
NspI	RCATGY	1 cut(s)	1062
PaeI	GCATGC	1 cut(s)	1062
PagI	TCATGA	3 cut(s)	304, 447, 943
PceI	AGGCCT	2 cut(s)	962, 1436
PcsI	WCGNNNNNNNCGW	1 cut(s)	261
PfeI	GAWTC	4 cut(s)	234, 1007, 1166, 1234
PflMI	CCANNNNNTGG	2 cut(s)	227, 805
PfoI	TCCNGGA	1 cut(s)	1018
PleI	GAGTC	2 cut(s)	202, 579
PpsI	GAGTC	2 cut(s)	202, 579
Ppu21I	YACGTR	1 cut(s)	94
Psp124BI	GAGCTC	1 cut(s)	1027
Psp6I	CCWGG	2 cut(s)	1018, 1436
PspFI	CCCAGC	1 cut(s)	912
PspGI	CCWGG	2 cut(s)	1018, 1436
PspN4I	GGNNCC	1 cut(s)	1161
PspPI	GGNCC	2 cut(s)	7, 1016
PstI	CTGCAG	3 cut(s)	327, 559, 1183
PstNI	CAGNNNCTG	2 cut(s)	563, 1361
PvuII	CAGCTG	1 cut(s)	1395
RsaI	GTAC	3 cut(s)	29, 154, 345
RsaNI	GTAC	3 cut(s)	28, 153, 344
SacI	GAGCTC	1 cut(s)	1027
SaqAI	TTAA	2 cut(s)	543, 1131
Sau3AI	GATC	8 cut(s)	88, 170, 391, 450, 664, 841, 1038, 1510
Sau96I	GGNCC	2 cut(s)	7, 1016
ScaI	AGTACT	2 cut(s)	154, 345
SchI	GAGTC	2 cut(s)	202, 580
ScrFI	CCNGG	2 cut(s)	1020, 1438
SduI	GDGCHC	3 cut(s)	951, 1027, 1124
SfaNI	GCATC	6 cut(s)	261, 337, 601, 889, 1342, 1367
SfcI	CTRYAG	3 cut(s)	323, 555, 1179
SinI	GGWCC	2 cut(s)	7, 1016
SmlI	CTYRAG	1 cut(s)	1206
SmoI	CTYRAG	1 cut(s)	1206
SphI	GCATGC	1 cut(s)	1062
Sse9I	AATT	3 cut(s)	396, 535, 731
SseBI	AGGCCT	2 cut(s)	962, 1436
SsiI	CCGC	3 cut(s)	474, 477, 1062
SspMI	CTAG	4 cut(s)	159, 224, 419, 1448
SstI	GAGCTC	1 cut(s)	1027
StuI	AGGCCT	2 cut(s)	962, 1436
StyD4I	CCNGG	2 cut(s)	1018, 1436
StyI	CCWWGG	2 cut(s)	21, 760
TaaI	ACNGT	3 cut(s)	18, 374, 1540
TaiI	ACGT	1 cut(s)	96
TaqI	TCGA	3 cut(s)	255, 728, 1263
TaqII	GACCGA	1 cut(s)	958
TasI	AATT	3 cut(s)	396, 535, 731
TatI	WGTACW	3 cut(s)	27, 152, 343
TauI	GCSGC	1 cut(s)	477
TfiI	GAWTC	4 cut(s)	234, 1007, 1166, 1234
Tru1I	TTAA	2 cut(s)	543, 1131
Tru9I	TTAA	2 cut(s)	543, 1131
TscAI	CASTG	5 cut(s)	394, 418, 568, 1009, 1543
TseFI	GTSAC	4 cut(s)	457, 740, 953, 1045
TseI	GCWGC	9 cut(s)	325, 554, 557, 614, 1142, 1181, 1194, 1197, 1355
Tsp45I	GTSAC	4 cut(s)	457, 740, 953, 1045
TspDTI	ATGAA	5 cut(s)	581, 657, 869, 932, 1179
TspRI	CASTG	5 cut(s)	394, 418, 568, 1009, 1543
Van91I	CCANNNNNTGG	2 cut(s)	227, 805
VpaK11BI	GGWCC	2 cut(s)	7, 1016
XapI	RAATTY	1 cut(s)	731
XceI	RCATGY	1 cut(s)	1062
XcmI	CCANNNNNNNNNTGG	1 cut(s)	767
XmiI	GTMKAC	1 cut(s)	869
XspI	CTAG	4 cut(s)	159, 224, 419, 1448
ZrmI	AGTACT	2 cut(s)	154, 345

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.