Rh6BG459700

Encoded by

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6B
OG0005901
Physical Location & Seq
Reverse (-)
67072112 .. 67073576
1465 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6BG459700.1

Sequence Viewer

Length: 1455 bp
ATGACGAACACGCGTACGGTCGTGAAAATTATCTCGAAAGAGTGCATCAAACCCTCTTCCCCAACACCTCAGCACCTGAGAACCCACAAGCTCTCCCTCTTGGACCAGTTCGTTCCTTCCATTTATGTACCCATGATCCTCTTCTATCCCATCCACCCAAACCCAACAGCTTCTGCTAATTCTGGTAATACTTGCCAAAGGTCAAAACTGCTAAAGCAATCCCTTTCAGAAACCTTGACTAGCTTCTACCCACTTGCCGGAAGAATTAGAGACAATCTCTCTATTGATTGCAATGACGAGGGGGCTAGTTACACAGAGGCAGAAGTCGAGTCCATAAATCTCTCCGAGTTCCTCAACCATCCTGATGTCACATTGCTCGGTCAGTTCCTTCCATCCGGTGCTAGTTTCACTGAATCAGCAGGTCCAGGAGCTCACTTAGCTATGATCCAAGTCACCAACTTTGCATGCGGTGGTTTTGCTGTTGGTGTCTTGGTTTCACATATGGTTGTTGATGGAACTGCATTGAGCACTTTTCTTAAAGCTTGGGCTGCAAGGTTTCGTAAGGCTCCTGAATCTGATATATGTAGGCCTAGTTTTGATGCCTCATCTGTGTTTCCTCAAAGTGATGCATTCCCAAGAGAAGCAACTATTATGGCTTTATGGATCCCCTTTCTGAGAATGGGAAAGTGTGCTTCAAGGAGATTTGTGTTTGATGCCACAGCTATTGCCGCACTTAAGGCCAAAGCAACAGCCAGTAGTGCCTCAAGCTCAAGCGTGCAAAATCCAACTCGTGTAGAGGTTGTTACAGCACTCATCTGGAAATACATTATGGCTGCGTCTGCCTTCAACACCGAAAATATTGATGGTGGGCAGAGGCAGAAGAGGTTAAGTTTGATAACTCACGCAGTCAATTTGCGTCGAAGAGCTGTGCCACCCTTTTCAGAAAACTGTATGGGAAATTTTCTCTTCACAGCTGCAGCTACTTCATGCAGCAGCAACGCTCAAGAGTTAGAACTGGGAAGCTTGGTGATTCGGATTAGGGAAGCAATAAAGAAACTCGATGGCAATGTTGTCCAAAGCCTACAAGGGGATGGAGGGGTCGCCAAAATGTGTGAGCTTTCAAAAGAGATGGGTGATACTTGCTCTGATGCAGCATCTGATGGTTCATTGGATTATATATGTTTTACCAGCTGGTGCAACTTTGGTCTGTATGACGTTGATTTCGGGTGGGGAAAGCCTATATGGATGTCTTGTGTTGGTGCAGACAATGCTCCACAATCCGTGTTCATGAATTCAGTCCTTTTAACAGATACGAGGTCTCGTGATGGAGTTGAGGCCTGGATTTATCTAGGTGAACAAGAGATGGCTATATTAGAACATGATGACAGCTTTCTTGCTTTTGCTTCTATTGATCATAGTCCTCTTGAACTTGGTAACACTGTTTCTTATCCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Transferase

Protein Analysis

484

Amino Acids

52.6

Weight (kDa)

5.66

Isoelectric Point (pI)

43.46

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Transferase PF02458 8 - 464 5.1e-85 Transferase family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 410
AccII CGCG 1 cut(s) 13
AciI CCGC 2 cut(s) 468, 729
AclWI GGATC 4 cut(s) 130, 439, 658, 671
AcsI RAATTY 2 cut(s) 958, 1291
AfaI GTAC 2 cut(s) 16, 129
AfiI CCNNNNNNNGG 2 cut(s) 257, 1087
AflII CTTAAG 1 cut(s) 734
AflIII ACRYGT 1 cut(s) 11
AgsI TTSAA 4 cut(s) 696, 847, 1122, 1427
AjnI CCWGG 2 cut(s) 424, 1337
Alw21I GWGCWC 2 cut(s) 433, 530
Alw26I GTCTC 2 cut(s) 264, 1323
AlwI GGATC 4 cut(s) 130, 439, 658, 671
AlwNI CAGNNNCTG 3 cut(s) 76, 173, 1157
AoxI GGCC 3 cut(s) 587, 738, 1335
ApeKI GCWGC 7 cut(s) 548, 833, 974, 977, 990, 993, 1151
ApoI RAATTY 2 cut(s) 958, 1291
ArsI GACNNNNNNTTYG 2 cut(s) 1205, 1237
AspS9I GGNCC 2 cut(s) 103, 422
AsuHPI GGTGA 4 cut(s) 445, 1039, 1145, 1364
AvaII GGWCC 2 cut(s) 103, 422
BamHI GGATCC 1 cut(s) 663
BanII GRGCYC 1 cut(s) 433
BauI CACGAG 2 cut(s) 789, 1320
Bbv12I GWGCWC 2 cut(s) 433, 530
BbvCI CCTCAGC 1 cut(s) 69
BbvI GCAGC 7 cut(s) 535, 820, 961, 989, 1002, 1005, 1163
BciT130I CCWGG 2 cut(s) 426, 1339
BclI TGATCA 1 cut(s) 1411
BcoDI GTCTC 2 cut(s) 264, 1323
BfaI CTAG 5 cut(s) 240, 306, 402, 591, 1349
BfmI CTRYAG 1 cut(s) 975
BfrI CTTAAG 1 cut(s) 734
BfuAI ACCTGC 1 cut(s) 410
BisI GCNGC 8 cut(s) 549, 729, 834, 975, 978, 991, 994, 1152
BlsI GCNGC 8 cut(s) 550, 730, 835, 976, 979, 992, 995, 1153
Bme1390I CCNGG 2 cut(s) 426, 1339
Bme18I GGWCC 2 cut(s) 103, 422
BmgT120I GGNCC 2 cut(s) 103, 422
BmiI GGNNCC 2 cut(s) 567, 665
BmrFI CCNGG 2 cut(s) 426, 1339
BmrI ACTGGG 1 cut(s) 1025
BmsI GCATC 6 cut(s) 54, 589, 616, 703, 1138, 1163
BmuI ACTGGG 1 cut(s) 1025
BplI GAGNNNNNCTC 2 cut(s) 261, 293
Bpu10I CCTNAGC 1 cut(s) 69
BpuEI CTTGAG 3 cut(s) 748, 754, 987
BsaI GGTCTC 1 cut(s) 1323
BsaWI WCCGGW 1 cut(s) 395
BsaXI ACNNNNNCTCC 2 cut(s) 77, 107
Bsc4I CCNNNNNNNGG 2 cut(s) 257, 1087
Bse1I ACTGG 3 cut(s) 106, 753, 1020
Bse3DI GCAATG 3 cut(s) 298, 371, 1072
BseBI CCWGG 2 cut(s) 426, 1339
BseGI GGATG 5 cut(s) 150, 358, 392, 1096, 1251
BseLI CCNNNNNNNGG 2 cut(s) 257, 1087
BseMI GCAATG 3 cut(s) 298, 371, 1072
BseMII CTCAG 3 cut(s) 68, 83, 665
BseNI ACTGG 3 cut(s) 106, 753, 1020
BseXI GCAGC 7 cut(s) 535, 820, 961, 989, 1002, 1005, 1163
BsgI GTGCAG 1 cut(s) 1281
Bsh1236I CGCG 1 cut(s) 13
Bsh1285I CGRYCG 1 cut(s) 21
BshFI GGCC 3 cut(s) 589, 740, 1337
BsiEI CGRYCG 1 cut(s) 21
BsiHKAI GWGCWC 2 cut(s) 433, 530
BsiSI CCGG 2 cut(s) 258, 396
BsiWI CGTACG 1 cut(s) 14
BslI CCNNNNNNNGG 2 cut(s) 257, 1087
BsmAI GTCTC 2 cut(s) 264, 1323
BsmI GAATGC 1 cut(s) 629
BsnI GGCC 3 cut(s) 589, 740, 1337
Bso31I GGTCTC 1 cut(s) 1323
Bsp1286I GDGCHC 2 cut(s) 433, 530
Bsp143I GATC 4 cut(s) 135, 444, 663, 1411
BspACI CCGC 2 cut(s) 468, 729
BspANI GGCC 3 cut(s) 589, 740, 1337
BspCNI CTCAG 3 cut(s) 69, 82, 666
BspFNI CGCG 1 cut(s) 13
BspHI TCATGA 1 cut(s) 1287
BspLI GGNNCC 2 cut(s) 567, 665
BspMAI CTGCAG 1 cut(s) 979
BspMI ACCTGC 1 cut(s) 410
BspPI GGATC 4 cut(s) 130, 439, 658, 671
BspQI GCTCTTC 1 cut(s) 916
BspTI CTTAAG 1 cut(s) 734
BspTNI GGTCTC 1 cut(s) 1323
BsrDI GCAATG 3 cut(s) 298, 371, 1072
BsrI ACTGG 3 cut(s) 106, 753, 1020
BssMI GATC 4 cut(s) 135, 444, 663, 1411
BssSI CACGAG 2 cut(s) 789, 1320
Bst2BI CACGAG 2 cut(s) 789, 1320
Bst2UI CCWGG 2 cut(s) 426, 1339
Bst4CI ACNGT 3 cut(s) 19, 950, 1441
Bst6I CTCTTC 5 cut(s) 61, 146, 875, 916, 971
BstAFI CTTAAG 1 cut(s) 734
BstAPI GCANNNNNTGC 1 cut(s) 1268
BstC8I GCNNGC 2 cut(s) 466, 776
BstDEI CTNAG 4 cut(s) 69, 77, 436, 674
BstF5I GGATG 5 cut(s) 150, 358, 392, 1096, 1251
BstFNI CGCG 1 cut(s) 13
BstKTI GATC 4 cut(s) 138, 447, 666, 1414
BstMAI GTCTC 2 cut(s) 264, 1323
BstMBI GATC 4 cut(s) 135, 444, 663, 1411
BstMCI CGRYCG 1 cut(s) 21
BstMWI GCNNNNNNNGC 7 cut(s) 437, 548, 728, 737, 758, 839, 1268
BstNI CCWGG 2 cut(s) 426, 1339
BstNSI RCATGY 1 cut(s) 468
BstSCI CCNGG 2 cut(s) 424, 1337
BstSFI CTRYAG 1 cut(s) 975
BstUI CGCG 1 cut(s) 13
BstV1I GCAGC 7 cut(s) 535, 820, 961, 989, 1002, 1005, 1163
BstX2I RGATCY 1 cut(s) 663
BstYI RGATCY 1 cut(s) 663
BsuRI GGCC 3 cut(s) 589, 740, 1337
BtsCI GGATG 5 cut(s) 150, 358, 392, 1096, 1251
BtsIMutI CAGTG 2 cut(s) 408, 1437
BveI ACCTGC 1 cut(s) 410
Cac8I GCNNGC 2 cut(s) 466, 776
CaiI CAGNNNCTG 3 cut(s) 76, 173, 1157
CciI TCATGA 1 cut(s) 1287
Cfr13I GGNCC 2 cut(s) 103, 422
CseI GACGC 2 cut(s) 825, 905
Csp6I GTAC 2 cut(s) 15, 128
CspCI CAANNNNNGTGG 2 cut(s) 706, 741
CviAII CATG 6 cut(s) 133, 465, 987, 1288, 1379, 1452
CviQI GTAC 2 cut(s) 15, 128
DdeI CTNAG 4 cut(s) 69, 77, 436, 674
DpnI GATC 4 cut(s) 137, 446, 665, 1413
DpnII GATC 4 cut(s) 135, 444, 663, 1411
Eam1104I CTCTTC 5 cut(s) 61, 146, 875, 916, 971
EarI CTCTTC 5 cut(s) 61, 146, 875, 916, 971
Ecl136II GAGCTC 1 cut(s) 431
Eco147I AGGCCT 2 cut(s) 589, 1337
Eco24I GRGCYC 1 cut(s) 433
Eco31I GGTCTC 1 cut(s) 1323
Eco47I GGWCC 2 cut(s) 103, 422
Eco53kI GAGCTC 1 cut(s) 431
EcoICRI GAGCTC 1 cut(s) 431
EcoRI GAATTC 1 cut(s) 1291
EcoRII CCWGG 2 cut(s) 424, 1337
EcoT22I ATGCAT 1 cut(s) 631
EcoT38I GRGCYC 1 cut(s) 433
FaeI CATG 6 cut(s) 136, 468, 990, 1291, 1382, 1455
FatI CATG 6 cut(s) 132, 464, 986, 1287, 1378, 1451
FauNDI CATATG 1 cut(s) 501
FbaI TGATCA 1 cut(s) 1411
Fnu4HI GCNGC 8 cut(s) 549, 729, 834, 975, 978, 991, 994, 1152
FokI GGATG 5 cut(s) 137, 345, 379, 1103, 1258
FriOI GRGCYC 1 cut(s) 433
Fsp4HI GCNGC 8 cut(s) 549, 729, 834, 975, 978, 991, 994, 1152
FspBI CTAG 5 cut(s) 240, 306, 402, 591, 1349
GluI GCNGC 8 cut(s) 549, 729, 834, 975, 978, 991, 994, 1152
HaeIII GGCC 3 cut(s) 589, 740, 1337
HapII CCGG 2 cut(s) 258, 396
HgaI GACGC 2 cut(s) 825, 905
Hin1II CATG 6 cut(s) 136, 468, 990, 1291, 1382, 1455
HindIII AAGCTT 2 cut(s) 540, 1021
HinfI GANTC 4 cut(s) 329, 413, 572, 1030
HpaII CCGG 2 cut(s) 258, 396
HphI GGTGA 4 cut(s) 445, 1039, 1145, 1364
Hpy166II GTNNAC 1 cut(s) 1355
Hpy188I TCNGA 8 cut(s) 229, 346, 577, 675, 943, 1035, 1147, 1159
Hpy188III TCNNGA 9 cut(s) 22, 34, 362, 569, 817, 1004, 1288, 1322, 1424
Hpy8I GTNNAC 1 cut(s) 1355
Hpy99I CGWCG 1 cut(s) 921
HpyAV CCTTC 3 cut(s) 126, 398, 853
HpyCH4III ACNGT 3 cut(s) 19, 950, 1441
HpyCH4IV ACGT 1 cut(s) 1215
HpyF10VI GCNNNNNNNGC 7 cut(s) 437, 548, 728, 737, 758, 839, 1268
HpyF3I CTNAG 4 cut(s) 69, 77, 436, 674
HpySE526I ACGT 1 cut(s) 1215
Hsp92II CATG 6 cut(s) 136, 468, 990, 1291, 1382, 1455
Ksp22I TGATCA 1 cut(s) 1411
Kzo9I GATC 4 cut(s) 135, 444, 663, 1411
LguI GCTCTTC 1 cut(s) 916
LmnI GCTCC 3 cut(s) 428, 571, 1276
Lsp1109I GCAGC 7 cut(s) 535, 820, 961, 989, 1002, 1005, 1163
LweI GCATC 6 cut(s) 54, 589, 616, 703, 1138, 1163
MaeI CTAG 5 cut(s) 240, 306, 402, 591, 1349
MaeII ACGT 1 cut(s) 1215
MaeIII GTNAC 5 cut(s) 308, 367, 451, 802, 1433
MalI GATC 4 cut(s) 137, 446, 665, 1413
MboI GATC 4 cut(s) 135, 444, 663, 1411
MboII GAAGA 6 cut(s) 48, 133, 273, 892, 933, 958
MflI RGATCY 1 cut(s) 663
MhlI GDGCHC 2 cut(s) 433, 530
MluCI AATT 6 cut(s) 27, 178, 264, 910, 958, 1291
MluI ACGCGT 1 cut(s) 11
MlyI GAGTC 1 cut(s) 338
MmeI TCCRAC 1 cut(s) 809
Mph1103I ATGCAT 1 cut(s) 631
MseI TTAA 4 cut(s) 537, 735, 887, 1304
MslI CAYNNNNRTG 1 cut(s) 363
MspA1I CMGCKG 2 cut(s) 974, 1191
MspCI CTTAAG 1 cut(s) 734
MspI CCGG 2 cut(s) 258, 396
MspR9I CCNGG 2 cut(s) 426, 1339
Mva1269I GAATGC 1 cut(s) 629
MvaI CCWGG 2 cut(s) 426, 1339
MvnI CGCG 1 cut(s) 13
MwoI GCNNNNNNNGC 7 cut(s) 437, 548, 728, 737, 758, 839, 1268
NdeI CATATG 1 cut(s) 501
NdeII GATC 4 cut(s) 135, 444, 663, 1411
NlaIII CATG 6 cut(s) 136, 468, 990, 1291, 1382, 1455
NlaIV GGNNCC 2 cut(s) 567, 665
NmuCI GTSAC 2 cut(s) 367, 451
NsiI ATGCAT 1 cut(s) 631
NspI RCATGY 1 cut(s) 468
PaeI GCATGC 1 cut(s) 468
PagI TCATGA 1 cut(s) 1287
PceI AGGCCT 2 cut(s) 589, 1337
PciSI GCTCTTC 1 cut(s) 916
PctI GAATGC 1 cut(s) 629
PfeI GAWTC 3 cut(s) 413, 572, 1030
Pfl23II CGTACG 1 cut(s) 14
PfoI TCCNGGA 1 cut(s) 424
PkrI GCNGC 8 cut(s) 550, 730, 835, 976, 979, 992, 995, 1153
PleI GAGTC 1 cut(s) 337
PpsI GAGTC 1 cut(s) 337
Psp124BI GAGCTC 1 cut(s) 433
Psp6I CCWGG 2 cut(s) 424, 1337
PspGI CCWGG 2 cut(s) 424, 1337
PspLI CGTACG 1 cut(s) 14
PspN4I GGNNCC 2 cut(s) 567, 665
PspPI GGNCC 2 cut(s) 103, 422
PstI CTGCAG 1 cut(s) 979
PstNI CAGNNNCTG 3 cut(s) 76, 173, 1157
PsuI RGATCY 1 cut(s) 663
PvuII CAGCTG 2 cut(s) 974, 1191
RsaI GTAC 2 cut(s) 16, 129
RsaNI GTAC 2 cut(s) 15, 128
RseI CAYNNNNRTG 1 cut(s) 363
SacI GAGCTC 1 cut(s) 433
SapI GCTCTTC 1 cut(s) 916
SaqAI TTAA 4 cut(s) 537, 735, 887, 1304
SatI GCNGC 8 cut(s) 549, 729, 834, 975, 978, 991, 994, 1152
Sau3AI GATC 4 cut(s) 135, 444, 663, 1411
Sau96I GGNCC 2 cut(s) 103, 422
SchI GAGTC 1 cut(s) 338
ScrFI CCNGG 2 cut(s) 426, 1339
SduI GDGCHC 2 cut(s) 433, 530
SfaNI GCATC 6 cut(s) 54, 589, 616, 703, 1138, 1163
SfcI CTRYAG 1 cut(s) 975
SinI GGWCC 2 cut(s) 103, 422
SmiMI CAYNNNNRTG 1 cut(s) 363
SmlI CTYRAG 4 cut(s) 734, 763, 769, 1002
SmoI CTYRAG 4 cut(s) 734, 763, 769, 1002
SphI GCATGC 1 cut(s) 468
Sse9I AATT 6 cut(s) 27, 178, 264, 910, 958, 1291
SseBI AGGCCT 2 cut(s) 589, 1337
SsiI CCGC 2 cut(s) 468, 729
SspI AATATT 1 cut(s) 859
SspMI CTAG 5 cut(s) 240, 306, 402, 591, 1349
SstI GAGCTC 1 cut(s) 433
StuI AGGCCT 2 cut(s) 589, 1337
StyD4I CCNGG 2 cut(s) 424, 1337
TaaI ACNGT 3 cut(s) 19, 950, 1441
TaiI ACGT 1 cut(s) 1218
TaqI TCGA 4 cut(s) 35, 327, 919, 1059
TaqII GACCGA 1 cut(s) 368
TasI AATT 6 cut(s) 27, 178, 264, 910, 958, 1291
TauI GCSGC 1 cut(s) 731
TfiI GAWTC 3 cut(s) 413, 572, 1030
Tru1I TTAA 4 cut(s) 537, 735, 887, 1304
Tru9I TTAA 4 cut(s) 537, 735, 887, 1304
TscAI CASTG 2 cut(s) 415, 1444
TseFI GTSAC 2 cut(s) 367, 451
TseI GCWGC 7 cut(s) 548, 833, 974, 977, 990, 993, 1151
Tsp45I GTSAC 2 cut(s) 367, 451
TspDTI ATGAA 4 cut(s) 975, 1155, 1276, 1304
TspGWI ACGGA 1 cut(s) 1270
TspRI CASTG 2 cut(s) 415, 1444
Vha464I CTTAAG 1 cut(s) 734
VpaK11BI GGWCC 2 cut(s) 103, 422
XapI RAATTY 2 cut(s) 958, 1291
XceI RCATGY 1 cut(s) 468
XspI CTAG 5 cut(s) 240, 306, 402, 591, 1349
Zsp2I ATGCAT 1 cut(s) 631
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.