FvH4_2g37480

Encoded by

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
OG0005901
Physical Location & Seq
Reverse (-)
27296242 .. 27297267
1026 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g37480.t1

Sequence Viewer

Length: 1026 bp
ATGCCTCCAATTTATGTTCCCATGATCTTGTTCTATCCTCCTGTTTCACCTCCCATTTCTACTAGCAGTGAAAGATCACAAGCACTCAAACAATCTCTCTCGGAAACCCTGACTCGCTTTTACCCGCTTGCAGGAAGAATCAGAAGCAATCTTTGCATAGATTGCAACGATGAAGGAGCTTGTTACATAGAGGCTAAAGATGAGTCACATGACCTCTCGGAGTTTCTGCAGCATCCTGATTTGTCACTACTCCCAAAGCTTCTTCCACCTTTAGACAGTATGCTTGATCACAGTGGTCAACTTAAAAATGCCACAACCGCCCCCGGAGGAGGAGCTGTTGTAGTCATGATACAAGTAACCAACTTCGCCTGTGGCGGCTTTGTGATCGGAGTGTATGTTTCTCACATGATTGTTGATGGTGTTGGCATCAGCACCTTTCTCAAAGCTTGGGCTGCAGCCACAGCACAGAGTCAATCAGGTACTGATCAGTGTATTCATGTGTTGCCTAGTTTTGATGGTGCAGCATTGTTCCCTCCGATTCTTGATGAACAAGGAAAGTTTGCACACCCAACAGAAGCAACTATGAGGGGCTTGTACAGGCGTTTTGCCAAGAAAGGAAGGTGTGTTAATAAGAGATTTGTATTTGAGGCCTCAGCTGTGGCCAAACTTAAAGAGCTAGCAGCAACATCATCATTACAGAATCCAAGTCGGGTGGAGGCAGTTTCGGCATTCATCTGGAAATGCGCCAGATCTGCTTGGAAGGCCAAGTCTGGTCGATCTGCACCAAGTTTGATAACACACGCAGTGAATTTGCGCCGAAGAGCTGACCCGAATCTTCCACAAAATAGTATGGGGAATTTTGTTTGTTTGACAGGTGCAATAGCAAATGAATGTCACGGAGAAGAGGAGTTAGAGTTGTCAAGCTTGGTGAGCAAGATGAGGGAAGCAACATCGAAAGTCAATGGTGACTTGGTGGCGAAGCTACAAGGCCAGGGCAGGTTGGAGACTTTGAGTAAGGTTTCCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Transferase

Protein Analysis

342

Amino Acids

36.86

Weight (kDa)

8.53

Isoelectric Point (pI)

53.46

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Transferase PF02458 2 - 328 4.7e-61 Transferase family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 987
AciI CCGC 3 cut(s) 125, 318, 375
AcoI YGGCCR 1 cut(s) 660
AcsI RAATTY 2 cut(s) 808, 856
AdeI CACNNNGTG 1 cut(s) 805
AfaI GTAC 2 cut(s) 481, 596
AfiI CCNNNNNNNGG 2 cut(s) 131, 329
AjnI CCWGG 1 cut(s) 990
AluBI AGCT 9 cut(s) 179, 259, 335, 446, 656, 676, 824, 924, 982
AluI AGCT 9 cut(s) 179, 259, 335, 446, 656, 676, 824, 924, 982
Alw26I GTCTC 1 cut(s) 998
AlwNI CAGNNNCTG 1 cut(s) 482
AoxI GGCC 4 cut(s) 648, 660, 762, 988
ApeKI GCWGC 5 cut(s) 229, 452, 455, 521, 680
ApoI RAATTY 2 cut(s) 808, 856
AspLEI GCGC 2 cut(s) 746, 816
AsuC2I CCSGG 1 cut(s) 324
AsuHPI GGTGA 3 cut(s) 39, 940, 977
AsuNHI GCTAGC 1 cut(s) 676
BalI TGGCCA 1 cut(s) 662
BbvCI CCTCAGC 1 cut(s) 652
BbvI GCAGC 5 cut(s) 241, 439, 467, 533, 692
BccI CCATC 2 cut(s) 410, 509
BciT130I CCWGG 1 cut(s) 992
BclI TGATCA 2 cut(s) 286, 484
BcnI CCSGG 1 cut(s) 324
BcoDI GTCTC 1 cut(s) 998
BfaI CTAG 4 cut(s) 63, 507, 677, 1024
BfmI CTRYAG 2 cut(s) 227, 453
BfuAI ACCTGC 1 cut(s) 987
BglII AGATCT 1 cut(s) 749
BisI GCNGC 6 cut(s) 230, 376, 453, 456, 522, 681
BlsI GCNGC 6 cut(s) 231, 377, 454, 457, 523, 682
Bme1390I CCNGG 2 cut(s) 324, 992
BmrFI CCNGG 2 cut(s) 324, 992
BmsI GCATC 2 cut(s) 241, 435
BmtI GCTAGC 1 cut(s) 680
Bpu10I CCTNAGC 1 cut(s) 652
BpuMI CCSGG 1 cut(s) 324
BsaJI CCNNGG 2 cut(s) 322, 991
BsaXI ACNNNNNCTCC 8 cut(s) 321, 324, 351, 354, 381, 411, 899, 929
Bsc4I CCNNNNNNNGG 2 cut(s) 131, 329
BseBI CCWGG 1 cut(s) 992
BseDI CCNNGG 2 cut(s) 322, 991
BseGI GGATG 1 cut(s) 232
BseLI CCNNNNNNNGG 2 cut(s) 131, 329
BseMII CTCAG 1 cut(s) 666
BseRI GAGGAG 3 cut(s) 342, 345, 920
BseXI GCAGC 5 cut(s) 241, 439, 467, 533, 692
BsgI GTGCAG 2 cut(s) 540, 765
BshFI GGCC 4 cut(s) 650, 662, 764, 990
BsiSI CCGG 1 cut(s) 324
BslI CCNNNNNNNGG 2 cut(s) 131, 329
BsmAI GTCTC 1 cut(s) 998
BsmI GAATGC 1 cut(s) 728
BsnI GGCC 4 cut(s) 650, 662, 764, 990
Bsp1407I TGTACA 1 cut(s) 594
Bsp143I GATC 7 cut(s) 24, 74, 286, 384, 484, 749, 776
BspACI CCGC 3 cut(s) 125, 318, 375
BspANI GGCC 4 cut(s) 650, 662, 764, 990
BspCNI CTCAG 1 cut(s) 665
BspHI TCATGA 1 cut(s) 345
BspMAI CTGCAG 2 cut(s) 231, 457
BspMI ACCTGC 1 cut(s) 987
BspOI GCTAGC 1 cut(s) 680
BspQI GCTCTTC 1 cut(s) 814
BsrGI TGTACA 1 cut(s) 594
BssECI CCNNGG 2 cut(s) 322, 991
BssMI GATC 7 cut(s) 24, 74, 286, 384, 484, 749, 776
Bst2UI CCWGG 1 cut(s) 992
Bst4CI ACNGT 2 cut(s) 278, 293
Bst6I CTCTTC 2 cut(s) 814, 897
BstAPI GCANNNNNTGC 2 cut(s) 153, 162
BstAUI TGTACA 1 cut(s) 594
BstC8I GCNNGC 2 cut(s) 129, 678
BstDEI CTNAG 1 cut(s) 652
BstF5I GGATG 1 cut(s) 232
BstHHI GCGC 2 cut(s) 746, 816
BstKTI GATC 7 cut(s) 27, 77, 289, 387, 487, 752, 779
BstMAI GTCTC 1 cut(s) 998
BstMBI GATC 7 cut(s) 24, 74, 286, 384, 484, 749, 776
BstMWI GCNNNNNNNGC 9 cut(s) 153, 162, 317, 452, 461, 725, 752, 761, 930
BstNI CCWGG 1 cut(s) 992
BstSCI CCNGG 2 cut(s) 322, 990
BstSFI CTRYAG 2 cut(s) 227, 453
BstV1I GCAGC 5 cut(s) 241, 439, 467, 533, 692
BstX2I RGATCY 1 cut(s) 749
BstYI RGATCY 1 cut(s) 749
BsuRI GGCC 4 cut(s) 650, 662, 764, 990
BtsCI GGATG 1 cut(s) 232
BtsI GCAGTG 2 cut(s) 73, 810
BtsIMutI CAGTG 4 cut(s) 73, 298, 494, 810
BveI ACCTGC 1 cut(s) 987
Cac8I GCNNGC 2 cut(s) 129, 678
CaiI CAGNNNCTG 1 cut(s) 482
CciI TCATGA 1 cut(s) 345
CfoI GCGC 2 cut(s) 746, 816
Csp6I GTAC 2 cut(s) 480, 595
CspCI CAANNNNNGTGG 2 cut(s) 693, 728
CviAII CATG 5 cut(s) 22, 209, 346, 406, 497
CviQI GTAC 2 cut(s) 480, 595
DdeI CTNAG 1 cut(s) 652
DpnI GATC 7 cut(s) 26, 76, 288, 386, 486, 751, 778
DpnII GATC 7 cut(s) 24, 74, 286, 384, 484, 749, 776
DraIII CACNNNGTG 1 cut(s) 805
EaeI YGGCCR 1 cut(s) 660
Eam1104I CTCTTC 2 cut(s) 814, 897
EarI CTCTTC 2 cut(s) 814, 897
Eco147I AGGCCT 1 cut(s) 650
EcoRII CCWGG 1 cut(s) 990
FaeI CATG 5 cut(s) 25, 212, 349, 409, 500
FatI CATG 5 cut(s) 21, 208, 345, 405, 496
FauI CCCGC 1 cut(s) 132
FbaI TGATCA 2 cut(s) 286, 484
Fnu4HI GCNGC 6 cut(s) 230, 376, 453, 456, 522, 681
FokI GGATG 1 cut(s) 219
Fsp4HI GCNGC 6 cut(s) 230, 376, 453, 456, 522, 681
FspBI CTAG 4 cut(s) 63, 507, 677, 1024
GlaI GCGC 2 cut(s) 745, 815
GluI GCNGC 6 cut(s) 230, 376, 453, 456, 522, 681
HaeIII GGCC 4 cut(s) 650, 662, 764, 990
HapII CCGG 1 cut(s) 324
HhaI GCGC 2 cut(s) 746, 816
Hin1II CATG 5 cut(s) 25, 212, 349, 409, 500
Hin6I GCGC 2 cut(s) 744, 814
HinP1I GCGC 2 cut(s) 744, 814
HincII GTYRAC 1 cut(s) 299
HindII GTYRAC 1 cut(s) 299
HindIII AAGCTT 3 cut(s) 257, 444, 922
HinfI GANTC 7 cut(s) 112, 138, 203, 469, 538, 700, 832
HpaII CCGG 1 cut(s) 324
HphI GGTGA 3 cut(s) 39, 940, 977
Hpy166II GTNNAC 1 cut(s) 299
Hpy188I TCNGA 5 cut(s) 103, 143, 220, 389, 537
Hpy188III TCNNGA 4 cut(s) 236, 346, 542, 736
Hpy8I GTNNAC 1 cut(s) 299
HpyAV CCTTC 3 cut(s) 167, 612, 754
HpyCH4III ACNGT 2 cut(s) 278, 293
HpyCH4V TGCA 9 cut(s) 131, 156, 165, 229, 455, 521, 563, 782, 878
HpyF10VI GCNNNNNNNGC 9 cut(s) 153, 162, 317, 452, 461, 725, 752, 761, 930
HpyF3I CTNAG 1 cut(s) 652
Hsp92II CATG 5 cut(s) 25, 212, 349, 409, 500
HspAI GCGC 2 cut(s) 744, 814
Ksp22I TGATCA 2 cut(s) 286, 484
Kzo9I GATC 7 cut(s) 24, 74, 286, 384, 484, 749, 776
LguI GCTCTTC 1 cut(s) 814
LmnI GCTCC 2 cut(s) 176, 332
Lsp1109I GCAGC 5 cut(s) 241, 439, 467, 533, 692
LweI GCATC 2 cut(s) 241, 435
MaeI CTAG 4 cut(s) 63, 507, 677, 1024
MaeIII GTNAC 6 cut(s) 182, 204, 243, 355, 893, 965
MalI GATC 7 cut(s) 26, 76, 288, 386, 486, 751, 778
MboI GATC 7 cut(s) 24, 74, 286, 384, 484, 749, 776
MboII GAAGA 5 cut(s) 147, 254, 827, 831, 914
MflI RGATCY 1 cut(s) 749
MlsI TGGCCA 1 cut(s) 662
MluCI AATT 3 cut(s) 9, 808, 856
MluNI TGGCCA 1 cut(s) 662
MlyI GAGTC 3 cut(s) 106, 212, 478
MmeI TCCRAC 1 cut(s) 981
Mox20I TGGCCA 1 cut(s) 662
MscI TGGCCA 1 cut(s) 662
MseI TTAA 3 cut(s) 303, 627, 669
Msp20I TGGCCA 1 cut(s) 662
MspA1I CMGCKG 1 cut(s) 656
MspI CCGG 1 cut(s) 324
MspR9I CCNGG 2 cut(s) 324, 992
Mva1269I GAATGC 1 cut(s) 728
MvaI CCWGG 1 cut(s) 992
MwoI GCNNNNNNNGC 9 cut(s) 153, 162, 317, 452, 461, 725, 752, 761, 930
NciI CCSGG 1 cut(s) 324
NdeII GATC 7 cut(s) 24, 74, 286, 384, 484, 749, 776
NheI GCTAGC 1 cut(s) 676
NlaIII CATG 5 cut(s) 25, 212, 349, 409, 500
NmuCI GTSAC 4 cut(s) 204, 243, 893, 965
PagI TCATGA 1 cut(s) 345
PceI AGGCCT 1 cut(s) 650
PciSI GCTCTTC 1 cut(s) 814
PctI GAATGC 1 cut(s) 728
PfeI GAWTC 4 cut(s) 138, 538, 700, 832
PkrI GCNGC 6 cut(s) 231, 377, 454, 457, 523, 682
PleI GAGTC 3 cut(s) 106, 211, 477
PpsI GAGTC 3 cut(s) 106, 211, 477
Psp6I CCWGG 1 cut(s) 990
PspGI CCWGG 1 cut(s) 990
PstI CTGCAG 2 cut(s) 231, 457
PstNI CAGNNNCTG 1 cut(s) 482
PsuI RGATCY 1 cut(s) 749
PvuII CAGCTG 1 cut(s) 656
RsaI GTAC 2 cut(s) 481, 596
RsaNI GTAC 2 cut(s) 480, 595
SapI GCTCTTC 1 cut(s) 814
SaqAI TTAA 3 cut(s) 303, 627, 669
SatI GCNGC 6 cut(s) 230, 376, 453, 456, 522, 681
Sau3AI GATC 7 cut(s) 24, 74, 286, 384, 484, 749, 776
SchI GAGTC 3 cut(s) 106, 212, 478
ScrFI CCNGG 2 cut(s) 324, 992
SfaNI GCATC 2 cut(s) 241, 435
SfcI CTRYAG 2 cut(s) 227, 453
Sse9I AATT 3 cut(s) 9, 808, 856
SseBI AGGCCT 1 cut(s) 650
SsiI CCGC 3 cut(s) 125, 318, 375
SspMI CTAG 4 cut(s) 63, 507, 677, 1024
StuI AGGCCT 1 cut(s) 650
StyD4I CCNGG 2 cut(s) 322, 990
TaaI ACNGT 2 cut(s) 278, 293
TaqI TCGA 2 cut(s) 775, 953
TasI AATT 3 cut(s) 9, 808, 856
TatI WGTACW 1 cut(s) 594
TauI GCSGC 1 cut(s) 378
TfiI GAWTC 4 cut(s) 138, 538, 700, 832
Tru1I TTAA 3 cut(s) 303, 627, 669
Tru9I TTAA 3 cut(s) 303, 627, 669
TscAI CASTG 4 cut(s) 73, 298, 494, 810
TseFI GTSAC 4 cut(s) 204, 243, 893, 965
TseI GCWGC 5 cut(s) 229, 452, 455, 521, 680
Tsp45I GTSAC 4 cut(s) 204, 243, 893, 965
TspDTI ATGAA 5 cut(s) 186, 485, 561, 721, 903
TspGWI ACGGA 1 cut(s) 912
TspRI CASTG 4 cut(s) 73, 298, 494, 810
XapI RAATTY 2 cut(s) 808, 856
XspI CTAG 4 cut(s) 63, 507, 677, 1024
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.