Rw6G038410

Encoded by

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr6
OG0005901
Physical Location & Seq
Forward (+)
62534930 .. 62536378
1449 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw6G038410.1

Sequence Viewer

Length: 1449 bp
ATGACGAACACGATCGTGAAAATTATCTCGAAAGAGTGCATCAAACCCTCTTCCCCAACACCTCAGCACCTGAGAACCCACAAGCTCTCCCTCTTGGACCAGTTCGTTCCTTCCATTTATGTACCCATGATCCTCTTCTATCCCGTCCACCCAAACCCAACAGCTTCTGCTAATTCTGGTAATACTTGCCAAAGGTCAAAACTGCTAAAGCAATCCCTTTCAGAAACCTTGACTAGCTTCTACCCACTTGCCGGAAGAATTAGAGACAATCTCTCTATTGATTGCAATGACGAGGGGGCTAGTTACACAGAGGCAGAAGTCGAGTCCATAAATCTCTCCGAGTTCCTCAACCATCCTGATGTCACATTGCTCGGTCAGTTCCTTCCATCCGGTGCTAGTTTCACTGAATCAGCAGGTCCAGGAGCTCACTTAGCTATGATCCAAGTCTCCAACTTTGCATGCGGTGGTTTTGCTGTTGGTGTCTTGGTTTCACATATGGTTGTTGATGGAACTGCATTGAGCACTTTTCTTAAAGCTTGGGCTGCAAGGTTTCGTAAGGCTCCTGAATCTGATATATGTAAGCCTAGTTTTGATGCCTCATCTGTGTTTCCTCAAAGTGATGCATTCCCAAGAGAAGCAACTATTATGGCTTTATGGATCCCCTTTCTGAGAATGGGAAAGTGTGCTTCAAGGAGGTTTGTGTTTGATGCCACAGCTATTGCCGCACTTAAGGCCAAAGCAACAGCCAGTAGTGCCTCAAGCTCAAGCGTGCAAAATCCGACTCGTGTAGAGGTTGTTACAGCACTCATCTGGAAATGCATTATGGCTGCGTCTGCCTTCAACACCGAAAATATTGATGGTGGGCAGAGGCAGAAGAGGTTAAGTTTGATAACTCACGCAGTCAATTTGCGTCGAAGAGCTGTGCCACCCTTTTCAGAAAACTGTATGGGAAATTTTCTCTTCACAGCTGCAGCTACTTCATGCAGCAGCAACGCTCAAGAGTTAGAACTGGGAAGCTTGGTGATTTGGATTAGGGAAGCAATAAAGAAACTCGATGGAAATGTTGTCCAAAGCCTACAAGGGGATGGAGGGGTCGCCAAAATGTGTGAGCTTTCAAAAGAGATGGGTGATACTTGCTCTGATGCAGCATCTGATGGTGCTTTGGATTATATATGTTTTACCAGCTGGTGCAACTTTGGTCTGTATGACGTTGATTTCGGGTGGGGAAAGCCTATATGGATGTCTTGTGTTGGTGCAGACAATGCTCCGCAATCCGTGTTCATGAATTCAGTCCTTTTAACAGATACAAGGTCTCGTGATGGAGTTGAGGCCTGGATTTATCTAGGTGAACAAGAGATGGCTATATTAGAACATGATGACAGCTTTCTTGCTTTTGCTTCTATTGATCATAGTCCTCTTGAACTTGGTAACACTGTTTCTCATCCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Transferase

Protein Analysis

482

Amino Acids

52.23

Weight (kDa)

5.52

Isoelectric Point (pI)

43.0

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Transferase PF02458 6 - 462 7.9e-85 Transferase family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 404
AciI CCGC 3 cut(s) 462, 723, 1268
AclWI GGATC 4 cut(s) 124, 433, 652, 665
AcsI RAATTY 2 cut(s) 952, 1285
AfaI GTAC 1 cut(s) 123
AfiI CCNNNNNNNGG 2 cut(s) 251, 1081
AflII CTTAAG 1 cut(s) 728
AgsI TTSAA 4 cut(s) 690, 841, 1116, 1421
AjnI CCWGG 2 cut(s) 418, 1331
AleI CACNNNNGTG 1 cut(s) 14
Alw21I GWGCWC 2 cut(s) 427, 524
Alw26I GTCTC 3 cut(s) 258, 451, 1317
AlwI GGATC 4 cut(s) 124, 433, 652, 665
AlwNI CAGNNNCTG 3 cut(s) 70, 167, 1151
AoxI GGCC 2 cut(s) 732, 1329
ApeKI GCWGC 7 cut(s) 542, 827, 968, 971, 984, 987, 1145
ApoI RAATTY 2 cut(s) 952, 1285
ArsI GACNNNNNNTTYG 2 cut(s) 1199, 1231
AspS9I GGNCC 2 cut(s) 97, 416
AsuHPI GGTGA 3 cut(s) 1033, 1139, 1358
AvaII GGWCC 2 cut(s) 97, 416
BamHI GGATCC 1 cut(s) 657
BanII GRGCYC 1 cut(s) 427
BauI CACGAG 2 cut(s) 783, 1314
Bbv12I GWGCWC 2 cut(s) 427, 524
BbvCI CCTCAGC 1 cut(s) 63
BbvI GCAGC 7 cut(s) 529, 814, 955, 983, 996, 999, 1157
BciT130I CCWGG 2 cut(s) 420, 1333
BclI TGATCA 1 cut(s) 1405
BcoDI GTCTC 3 cut(s) 258, 451, 1317
BfaI CTAG 5 cut(s) 234, 300, 396, 585, 1343
BfmI CTRYAG 1 cut(s) 969
BfrI CTTAAG 1 cut(s) 728
BfuAI ACCTGC 1 cut(s) 404
BisI GCNGC 8 cut(s) 543, 723, 828, 969, 972, 985, 988, 1146
BlsI GCNGC 8 cut(s) 544, 724, 829, 970, 973, 986, 989, 1147
Bme1390I CCNGG 2 cut(s) 420, 1333
Bme18I GGWCC 2 cut(s) 97, 416
BmgT120I GGNCC 2 cut(s) 97, 416
BmiI GGNNCC 2 cut(s) 561, 659
BmrFI CCNGG 2 cut(s) 420, 1333
BmrI ACTGGG 1 cut(s) 1019
BmsI GCATC 6 cut(s) 48, 583, 610, 697, 1132, 1157
BmuI ACTGGG 1 cut(s) 1019
BplI GAGNNNNNCTC 2 cut(s) 255, 287
Bpu10I CCTNAGC 1 cut(s) 63
BpuEI CTTGAG 3 cut(s) 742, 748, 981
BsaI GGTCTC 1 cut(s) 1317
BsaWI WCCGGW 1 cut(s) 389
BsaXI ACNNNNNCTCC 2 cut(s) 71, 101
Bsc4I CCNNNNNNNGG 2 cut(s) 251, 1081
Bse1I ACTGG 3 cut(s) 100, 747, 1014
Bse3DI GCAATG 2 cut(s) 292, 365
BseBI CCWGG 2 cut(s) 420, 1333
BseGI GGATG 5 cut(s) 352, 386, 1090, 1245, 1441
BseLI CCNNNNNNNGG 2 cut(s) 251, 1081
BseMI GCAATG 2 cut(s) 292, 365
BseMII CTCAG 3 cut(s) 62, 77, 659
BseNI ACTGG 3 cut(s) 100, 747, 1014
BseXI GCAGC 7 cut(s) 529, 814, 955, 983, 996, 999, 1157
BsgI GTGCAG 1 cut(s) 1275
Bsh1285I CGRYCG 1 cut(s) 15
BshFI GGCC 2 cut(s) 734, 1331
BsiEI CGRYCG 1 cut(s) 15
BsiHKAI GWGCWC 2 cut(s) 427, 524
BsiSI CCGG 2 cut(s) 252, 390
BslI CCNNNNNNNGG 2 cut(s) 251, 1081
BsmAI GTCTC 3 cut(s) 258, 451, 1317
BsmI GAATGC 1 cut(s) 623
BsnI GGCC 2 cut(s) 734, 1331
Bso31I GGTCTC 1 cut(s) 1317
Bsp1286I GDGCHC 2 cut(s) 427, 524
Bsp143I GATC 5 cut(s) 12, 129, 438, 657, 1405
BspACI CCGC 3 cut(s) 462, 723, 1268
BspANI GGCC 2 cut(s) 734, 1331
BspCNI CTCAG 3 cut(s) 63, 76, 660
BspHI TCATGA 1 cut(s) 1281
BspLI GGNNCC 2 cut(s) 561, 659
BspMAI CTGCAG 1 cut(s) 973
BspMI ACCTGC 1 cut(s) 404
BspPI GGATC 4 cut(s) 124, 433, 652, 665
BspQI GCTCTTC 1 cut(s) 910
BspTI CTTAAG 1 cut(s) 728
BspTNI GGTCTC 1 cut(s) 1317
BsrDI GCAATG 2 cut(s) 292, 365
BsrI ACTGG 3 cut(s) 100, 747, 1014
BssMI GATC 5 cut(s) 12, 129, 438, 657, 1405
BssSI CACGAG 2 cut(s) 783, 1314
Bst2BI CACGAG 2 cut(s) 783, 1314
Bst2UI CCWGG 2 cut(s) 420, 1333
Bst4CI ACNGT 2 cut(s) 944, 1435
Bst6I CTCTTC 5 cut(s) 55, 140, 869, 910, 965
BstAFI CTTAAG 1 cut(s) 728
BstAPI GCANNNNNTGC 1 cut(s) 1262
BstC8I GCNNGC 2 cut(s) 460, 770
BstDEI CTNAG 4 cut(s) 63, 71, 430, 668
BstF5I GGATG 5 cut(s) 352, 386, 1090, 1245, 1441
BstKTI GATC 5 cut(s) 15, 132, 441, 660, 1408
BstMAI GTCTC 3 cut(s) 258, 451, 1317
BstMBI GATC 5 cut(s) 12, 129, 438, 657, 1405
BstMCI CGRYCG 1 cut(s) 15
BstMWI GCNNNNNNNGC 7 cut(s) 431, 542, 722, 731, 752, 833, 1262
BstNI CCWGG 2 cut(s) 420, 1333
BstNSI RCATGY 1 cut(s) 462
BstSCI CCNGG 2 cut(s) 418, 1331
BstSFI CTRYAG 1 cut(s) 969
BstV1I GCAGC 7 cut(s) 529, 814, 955, 983, 996, 999, 1157
BstX2I RGATCY 1 cut(s) 657
BstYI RGATCY 1 cut(s) 657
BsuRI GGCC 2 cut(s) 734, 1331
BtsCI GGATG 5 cut(s) 352, 386, 1090, 1245, 1441
BtsIMutI CAGTG 2 cut(s) 402, 1431
BveI ACCTGC 1 cut(s) 404
Cac8I GCNNGC 2 cut(s) 460, 770
CaiI CAGNNNCTG 3 cut(s) 70, 167, 1151
CciI TCATGA 1 cut(s) 1281
Cfr13I GGNCC 2 cut(s) 97, 416
CseI GACGC 2 cut(s) 819, 899
Csp6I GTAC 1 cut(s) 122
CspCI CAANNNNNGTGG 2 cut(s) 700, 735
CviAII CATG 6 cut(s) 127, 459, 981, 1282, 1373, 1446
CviQI GTAC 1 cut(s) 122
DdeI CTNAG 4 cut(s) 63, 71, 430, 668
DpnI GATC 5 cut(s) 14, 131, 440, 659, 1407
DpnII GATC 5 cut(s) 12, 129, 438, 657, 1405
Eam1104I CTCTTC 5 cut(s) 55, 140, 869, 910, 965
EarI CTCTTC 5 cut(s) 55, 140, 869, 910, 965
Ecl136II GAGCTC 1 cut(s) 425
Eco147I AGGCCT 1 cut(s) 1331
Eco24I GRGCYC 1 cut(s) 427
Eco31I GGTCTC 1 cut(s) 1317
Eco47I GGWCC 2 cut(s) 97, 416
Eco53kI GAGCTC 1 cut(s) 425
EcoICRI GAGCTC 1 cut(s) 425
EcoRI GAATTC 1 cut(s) 1285
EcoRII CCWGG 2 cut(s) 418, 1331
EcoT22I ATGCAT 2 cut(s) 625, 821
EcoT38I GRGCYC 1 cut(s) 427
FaeI CATG 6 cut(s) 130, 462, 984, 1285, 1376, 1449
FatI CATG 6 cut(s) 126, 458, 980, 1281, 1372, 1445
FauNDI CATATG 1 cut(s) 495
FbaI TGATCA 1 cut(s) 1405
Fnu4HI GCNGC 8 cut(s) 543, 723, 828, 969, 972, 985, 988, 1146
FokI GGATG 5 cut(s) 339, 373, 1097, 1252, 1428
FriOI GRGCYC 1 cut(s) 427
Fsp4HI GCNGC 8 cut(s) 543, 723, 828, 969, 972, 985, 988, 1146
FspBI CTAG 5 cut(s) 234, 300, 396, 585, 1343
GluI GCNGC 8 cut(s) 543, 723, 828, 969, 972, 985, 988, 1146
HaeIII GGCC 2 cut(s) 734, 1331
HapII CCGG 2 cut(s) 252, 390
HgaI GACGC 2 cut(s) 819, 899
Hin1II CATG 6 cut(s) 130, 462, 984, 1285, 1376, 1449
HindIII AAGCTT 2 cut(s) 534, 1015
HinfI GANTC 4 cut(s) 323, 407, 566, 781
HpaII CCGG 2 cut(s) 252, 390
HphI GGTGA 3 cut(s) 1033, 1139, 1358
Hpy166II GTNNAC 2 cut(s) 148, 1349
Hpy188I TCNGA 8 cut(s) 223, 340, 571, 669, 780, 937, 1141, 1153
Hpy188III TCNNGA 9 cut(s) 16, 28, 356, 563, 811, 998, 1282, 1316, 1418
Hpy8I GTNNAC 2 cut(s) 148, 1349
Hpy99I CGWCG 1 cut(s) 915
HpyAV CCTTC 3 cut(s) 120, 392, 847
HpyCH4III ACNGT 2 cut(s) 944, 1435
HpyCH4IV ACGT 1 cut(s) 1209
HpyF10VI GCNNNNNNNGC 7 cut(s) 431, 542, 722, 731, 752, 833, 1262
HpyF3I CTNAG 4 cut(s) 63, 71, 430, 668
HpySE526I ACGT 1 cut(s) 1209
Hsp92II CATG 6 cut(s) 130, 462, 984, 1285, 1376, 1449
Ksp22I TGATCA 1 cut(s) 1405
Kzo9I GATC 5 cut(s) 12, 129, 438, 657, 1405
LguI GCTCTTC 1 cut(s) 910
LmnI GCTCC 3 cut(s) 422, 565, 1270
Lsp1109I GCAGC 7 cut(s) 529, 814, 955, 983, 996, 999, 1157
LweI GCATC 6 cut(s) 48, 583, 610, 697, 1132, 1157
MaeI CTAG 5 cut(s) 234, 300, 396, 585, 1343
MaeII ACGT 1 cut(s) 1209
MaeIII GTNAC 4 cut(s) 302, 361, 796, 1427
MalI GATC 5 cut(s) 14, 131, 440, 659, 1407
MboI GATC 5 cut(s) 12, 129, 438, 657, 1405
MboII GAAGA 6 cut(s) 42, 127, 267, 886, 927, 952
MflI RGATCY 1 cut(s) 657
MhlI GDGCHC 2 cut(s) 427, 524
MluCI AATT 6 cut(s) 21, 172, 258, 904, 952, 1285
MlyI GAGTC 2 cut(s) 332, 775
MmeI TCCRAC 2 cut(s) 474, 803
Mph1103I ATGCAT 2 cut(s) 625, 821
MseI TTAA 4 cut(s) 531, 729, 881, 1298
MslI CAYNNNNRTG 2 cut(s) 14, 357
MspA1I CMGCKG 2 cut(s) 968, 1185
MspCI CTTAAG 1 cut(s) 728
MspI CCGG 2 cut(s) 252, 390
MspR9I CCNGG 2 cut(s) 420, 1333
Mva1269I GAATGC 1 cut(s) 623
MvaI CCWGG 2 cut(s) 420, 1333
MwoI GCNNNNNNNGC 7 cut(s) 431, 542, 722, 731, 752, 833, 1262
NdeI CATATG 1 cut(s) 495
NdeII GATC 5 cut(s) 12, 129, 438, 657, 1405
NlaIII CATG 6 cut(s) 130, 462, 984, 1285, 1376, 1449
NlaIV GGNNCC 2 cut(s) 561, 659
NmuCI GTSAC 1 cut(s) 361
NsiI ATGCAT 2 cut(s) 625, 821
NspI RCATGY 1 cut(s) 462
OliI CACNNNNGTG 1 cut(s) 14
PaeI GCATGC 1 cut(s) 462
PagI TCATGA 1 cut(s) 1281
PceI AGGCCT 1 cut(s) 1331
PciSI GCTCTTC 1 cut(s) 910
PctI GAATGC 1 cut(s) 623
PfeI GAWTC 2 cut(s) 407, 566
PfoI TCCNGGA 1 cut(s) 418
PkrI GCNGC 8 cut(s) 544, 724, 829, 970, 973, 986, 989, 1147
Ple19I CGATCG 1 cut(s) 15
PleI GAGTC 2 cut(s) 331, 775
PpsI GAGTC 2 cut(s) 331, 775
Psp124BI GAGCTC 1 cut(s) 427
Psp6I CCWGG 2 cut(s) 418, 1331
PspGI CCWGG 2 cut(s) 418, 1331
PspN4I GGNNCC 2 cut(s) 561, 659
PspPI GGNCC 2 cut(s) 97, 416
PstI CTGCAG 1 cut(s) 973
PstNI CAGNNNCTG 3 cut(s) 70, 167, 1151
PsuI RGATCY 1 cut(s) 657
PvuI CGATCG 1 cut(s) 15
PvuII CAGCTG 2 cut(s) 968, 1185
RsaI GTAC 1 cut(s) 123
RsaNI GTAC 1 cut(s) 122
RseI CAYNNNNRTG 2 cut(s) 14, 357
SacI GAGCTC 1 cut(s) 427
SapI GCTCTTC 1 cut(s) 910
SaqAI TTAA 4 cut(s) 531, 729, 881, 1298
SatI GCNGC 8 cut(s) 543, 723, 828, 969, 972, 985, 988, 1146
Sau3AI GATC 5 cut(s) 12, 129, 438, 657, 1405
Sau96I GGNCC 2 cut(s) 97, 416
SchI GAGTC 2 cut(s) 332, 775
ScrFI CCNGG 2 cut(s) 420, 1333
SduI GDGCHC 2 cut(s) 427, 524
SfaNI GCATC 6 cut(s) 48, 583, 610, 697, 1132, 1157
SfcI CTRYAG 1 cut(s) 969
SinI GGWCC 2 cut(s) 97, 416
SmiMI CAYNNNNRTG 2 cut(s) 14, 357
SmlI CTYRAG 4 cut(s) 728, 757, 763, 996
SmoI CTYRAG 4 cut(s) 728, 757, 763, 996
SphI GCATGC 1 cut(s) 462
Sse9I AATT 6 cut(s) 21, 172, 258, 904, 952, 1285
SseBI AGGCCT 1 cut(s) 1331
SsiI CCGC 3 cut(s) 462, 723, 1268
SspI AATATT 1 cut(s) 853
SspMI CTAG 5 cut(s) 234, 300, 396, 585, 1343
SstI GAGCTC 1 cut(s) 427
StuI AGGCCT 1 cut(s) 1331
StyD4I CCNGG 2 cut(s) 418, 1331
TaaI ACNGT 2 cut(s) 944, 1435
TaiI ACGT 1 cut(s) 1212
TaqI TCGA 4 cut(s) 29, 321, 913, 1053
TaqII GACCGA 1 cut(s) 362
TasI AATT 6 cut(s) 21, 172, 258, 904, 952, 1285
TauI GCSGC 1 cut(s) 725
TfiI GAWTC 2 cut(s) 407, 566
Tru1I TTAA 4 cut(s) 531, 729, 881, 1298
Tru9I TTAA 4 cut(s) 531, 729, 881, 1298
TscAI CASTG 2 cut(s) 409, 1438
TseFI GTSAC 1 cut(s) 361
TseI GCWGC 7 cut(s) 542, 827, 968, 971, 984, 987, 1145
Tsp45I GTSAC 1 cut(s) 361
TspDTI ATGAA 3 cut(s) 969, 1270, 1298
TspGWI ACGGA 1 cut(s) 1264
TspRI CASTG 2 cut(s) 409, 1438
Vha464I CTTAAG 1 cut(s) 728
VpaK11BI GGWCC 2 cut(s) 97, 416
XapI RAATTY 2 cut(s) 952, 1285
XceI RCATGY 1 cut(s) 462
XspI CTAG 5 cut(s) 234, 300, 396, 585, 1343
Zsp2I ATGCAT 2 cut(s) 625, 821
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.