RLG00000010999

Encoded by

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr3
OG0005901
Physical Location & Seq
Reverse (-)
5913201 .. 5914655
1455 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000010999

Sequence Viewer

Length: 1455 bp
ATGGAGGTCCAAATACGGTCCAAGGAGTACATCAAGCCCTCTTCCCCAACACCTCCACACATGAACACATGCAGATTTTCCCTATTGGATCACGTCATGCCTCCAGTTTATGTTCCCATGGTCTTGTTCTATCCTCCTGTTTCACCTCTTAGTACTACTAGAAGTGAAAGATCACAAGCACTAAAACAATCTCTCTCGGAAACCCTGACTCGCTTTTACCCACTAGCTGGAAGAATCAGAGACTACCTTTGCATCCATTGCAACGACGAAGGAGCTTATTACATAGAGGCCAATTTCAAGTCTCATGACCTCTCGGAGTTTCTGCAGCATCCTGACTTGTCAGTACTCCCCAAGCTTCTCCCAACTTTCAACAGTTTGCTTGATTACACTGATCTAATTGCAAATGCCACCAATGACCTAGGAGGAGGAGCTGATGTAGTCATGATACAAGTGACTAACTTTGCTTGCGGCGGCTTTGTGATTGGAGTGTTTGTTTCTCATATGATTGTTGATGGCATTGCCATCAGCAATTTTCTTAAAGCTTGGGCTATAGCCACTGCACAGAGTCTATCAGGTCAGAGTGTTCATGTATTTCCTAATTTTGATGCCGTACCATTGTTCCCTCCTATTCTTGATGAACAAGGTAAGAGCACACACCCAAGAGAAGCAACCATGAGGGCATTGTACAGGCGTTTTGCCAAGAGAGGAAGGTGTGTTACGAACAGATTTGTATTTGAGGCCTCAGCTGTGGCCAAACTTAAAGAGCAAGCAGCAACATCATCATTACAAAATCCAAATCGGGTGGAGGCAGTGTCAGCATTCATTTGGAAATGCACCATGGTAGCTTGGAAGGCCAAGTCTGGTCAATCTGCACCAAGTTTGAAAACCCACGCAGTGAATTTGCGCCGAAGAGCTGAGCCGAATTTTTCACAAAATTGTATGGGGAATTTTGTTTGTTTGGCAGGTGCAATAGCAAATGATCATCAGAGAGAACAGGAGTTAGAGTTGTCAAGCTTGGTGAGCAAGATGAGGGAAGCAACATCGAAATTCAATGGTGACTTGGTGGCCAAGCTCCAAGGTCAAGATGGGTTAGCCACTATTAGCAAGGTTTTCCAAGACATGGCCGAGGCTATCACACTTTCCACTAATGGAGATGAACAGGTGGAGATGAACTTTATTGGGTATACCAGCATTGCCTACTCTGGAGTGTATGATGCCGATTTCGGCTGGGGAAAGCCTCTGTGGGTCATTCCAGTTCATGAGCCCTGTCAAGAGGCCTTTTCGGTCAATGTAGTTCGTTTGATAGATACAGGAGAATGGGGAAACAATGGTTTTGAAGCTTGGATTTCTCTAGCTGAAGAAGAAATGGCAATGTTGCAAATCACTCAGGACTTGCTTGCTTTTGCTTCTCTCAATCCTAGTCCTCTCAGATTAAGCCAAAATACTGGGTCCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Transferase

Protein Analysis

485

Amino Acids

53.54

Weight (kDa)

5.92

Isoelectric Point (pI)

39.13

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Transferase PF02458 1 - 461 1.2e-74 Transferase family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 953
Acc36I ACCTGC 1 cut(s) 953
AccB7I CCANNNNNTGG 2 cut(s) 227, 1120
AccI GTMKAC 1 cut(s) 1184
AciI CCGC 2 cut(s) 468, 471
AclWI GGATC 1 cut(s) 96
AcoI YGGCCR 3 cut(s) 750, 1065, 1122
AcsI RAATTY 4 cut(s) 898, 922, 946, 1046
AcuI CTGAAG 1 cut(s) 1377
AdeI CACNNNGTG 1 cut(s) 895
AfaI GTAC 5 cut(s) 29, 154, 345, 612, 686
AfiI CCNNNNNNNGG 2 cut(s) 227, 1120
AgsI TTSAA 5 cut(s) 298, 370, 883, 1051, 1337
AjiI CACGTC 1 cut(s) 94
Alw21I GWGCWC 1 cut(s) 653
Alw26I GTCTC 2 cut(s) 234, 306
AlwI GGATC 1 cut(s) 96
AoxI GGCC 7 cut(s) 288, 738, 750, 852, 1065, 1122, 1275
ApeKI GCWGC 2 cut(s) 325, 770
ApoI RAATTY 4 cut(s) 898, 922, 946, 1046
AspA2I CCTAGG 1 cut(s) 418
AspLEI GCGC 1 cut(s) 906
AspS9I GGNCC 3 cut(s) 7, 18, 1449
AsuHPI GGTGA 3 cut(s) 135, 1030, 1067
AvaII GGWCC 3 cut(s) 7, 18, 1449
AvrII CCTAGG 1 cut(s) 418
BalI TGGCCA 2 cut(s) 752, 1067
BanII GRGCYC 1 cut(s) 1266
BarI GAAGNNNNNNTAC 2 cut(s) 700, 732
Bbv12I GWGCWC 1 cut(s) 653
BbvCI CCTCAGC 1 cut(s) 742
BbvI GCAGC 2 cut(s) 337, 782
BccI CCATC 3 cut(s) 506, 530, 1079
BceAI ACGGC 1 cut(s) 593
BclI TGATCA 1 cut(s) 979
BcoDI GTCTC 2 cut(s) 234, 306
BfaI CTAG 6 cut(s) 159, 224, 419, 1352, 1419, 1453
BfmI CTRYAG 2 cut(s) 323, 549
BfuAI ACCTGC 1 cut(s) 953
BisI GCNGC 4 cut(s) 326, 469, 472, 771
BlnI CCTAGG 1 cut(s) 418
BlpI GCTNAGC 1 cut(s) 915
BlsI GCNGC 4 cut(s) 327, 470, 473, 772
BmcAI AGTACT 2 cut(s) 154, 345
Bme18I GGWCC 3 cut(s) 7, 18, 1449
BmgBI CACGTC 1 cut(s) 94
BmgT120I GGNCC 3 cut(s) 7, 18, 1449
BmiI GGNNCC 1 cut(s) 1450
BmrI ACTGGG 1 cut(s) 1455
BmsI GCATC 4 cut(s) 261, 337, 595, 1204
BmuI ACTGGG 1 cut(s) 1455
BpmI CTGGAG 2 cut(s) 87, 1224
Bpu10I CCTNAGC 1 cut(s) 742
Bpu1102I GCTNAGC 1 cut(s) 915
BsaJI CCNNGG 6 cut(s) 21, 117, 418, 837, 1075, 1125
BsaXI ACNNNNNCTCC 8 cut(s) 420, 450, 477, 507, 797, 827, 989, 1019
Bsc4I CCNNNNNNNGG 2 cut(s) 227, 1120
Bse1I ACTGG 3 cut(s) 104, 1253, 1450
Bse3DI GCAATG 4 cut(s) 256, 516, 1191, 1377
BseDI CCNNGG 6 cut(s) 21, 117, 418, 837, 1075, 1125
BseGI GGATG 2 cut(s) 252, 328
BseLI CCNNNNNNNGG 2 cut(s) 227, 1120
BseMI GCAATG 4 cut(s) 256, 516, 1191, 1377
BseMII CTCAG 4 cut(s) 756, 906, 1400, 1441
BseNI ACTGG 3 cut(s) 104, 1253, 1450
BseRI GAGGAG 2 cut(s) 438, 441
BseXI GCAGC 2 cut(s) 337, 782
BseYI CCCAGC 1 cut(s) 1227
BsgI GTGCAG 2 cut(s) 543, 855
BshFI GGCC 7 cut(s) 290, 740, 752, 854, 1067, 1124, 1277
BsiHKAI GWGCWC 1 cut(s) 653
BslI CCNNNNNNNGG 2 cut(s) 227, 1120
BsmAI GTCTC 2 cut(s) 234, 306
BsmI GAATGC 1 cut(s) 818
BsnI GGCC 7 cut(s) 290, 740, 752, 854, 1067, 1124, 1277
Bsp1286I GDGCHC 2 cut(s) 653, 1266
Bsp1407I TGTACA 1 cut(s) 684
Bsp143I GATC 4 cut(s) 88, 170, 391, 979
Bsp1720I GCTNAGC 1 cut(s) 915
Bsp19I CCATGG 2 cut(s) 117, 837
BspACI CCGC 2 cut(s) 468, 471
BspANI GGCC 7 cut(s) 290, 740, 752, 854, 1067, 1124, 1277
BspCNI CTCAG 4 cut(s) 755, 907, 1399, 1440
BspHI TCATGA 3 cut(s) 304, 441, 1258
BspLI GGNNCC 1 cut(s) 1450
BspMAI CTGCAG 1 cut(s) 327
BspMI ACCTGC 1 cut(s) 953
BspPI GGATC 1 cut(s) 96
BspQI GCTCTTC 1 cut(s) 904
BsrDI GCAATG 4 cut(s) 256, 516, 1191, 1377
BsrGI TGTACA 1 cut(s) 684
BsrI ACTGG 3 cut(s) 104, 1253, 1450
BssECI CCNNGG 6 cut(s) 21, 117, 418, 837, 1075, 1125
BssMI GATC 4 cut(s) 88, 170, 391, 979
BssNAI GTATAC 1 cut(s) 1185
BssT1I CCWWGG 5 cut(s) 21, 117, 418, 837, 1075
Bst1107I GTATAC 1 cut(s) 1185
Bst4CI ACNGT 2 cut(s) 18, 374
Bst6I CTCTTC 2 cut(s) 46, 904
BstAPI GCANNNNNTGC 1 cut(s) 258
BstAUI TGTACA 1 cut(s) 684
BstC8I GCNNGC 3 cut(s) 466, 768, 1398
BstDEI CTNAG 5 cut(s) 149, 742, 915, 1386, 1427
BstDSI CCRYGG 2 cut(s) 117, 837
BstF5I GGATG 2 cut(s) 252, 328
BstHHI GCGC 1 cut(s) 906
BstKTI GATC 4 cut(s) 91, 173, 394, 982
BstMAI GTCTC 2 cut(s) 234, 306
BstMBI GATC 4 cut(s) 88, 170, 391, 979
BstMWI GCNNNNNNNGC 4 cut(s) 258, 815, 851, 1020
BstNSI RCATGY 1 cut(s) 72
BstSFI CTRYAG 2 cut(s) 323, 549
BstV1I GCAGC 2 cut(s) 337, 782
BstXI CCANNNNNNTGG 1 cut(s) 1445
BstZ17I GTATAC 1 cut(s) 1185
BsuRI GGCC 7 cut(s) 290, 740, 752, 854, 1067, 1124, 1277
BtgI CCRYGG 2 cut(s) 117, 837
BtrI CACGTC 1 cut(s) 94
BtsCI GGATG 2 cut(s) 252, 328
BtsI GCAGTG 3 cut(s) 555, 816, 900
BtsIMutI CAGTG 4 cut(s) 387, 555, 816, 900
BveI ACCTGC 1 cut(s) 953
Cac8I GCNNGC 3 cut(s) 466, 768, 1398
CciI TCATGA 3 cut(s) 304, 441, 1258
CfoI GCGC 1 cut(s) 906
Cfr13I GGNCC 3 cut(s) 7, 18, 1449
Csp6I GTAC 5 cut(s) 28, 153, 344, 611, 685
CspCI CAANNNNNGTGG 2 cut(s) 783, 818
CviQI GTAC 5 cut(s) 28, 153, 344, 611, 685
DdeI CTNAG 5 cut(s) 149, 742, 915, 1386, 1427
DpnI GATC 4 cut(s) 90, 172, 393, 981
DpnII GATC 4 cut(s) 88, 170, 391, 979
DraIII CACNNNGTG 1 cut(s) 895
EaeI YGGCCR 3 cut(s) 750, 1065, 1122
Eam1104I CTCTTC 2 cut(s) 46, 904
EarI CTCTTC 2 cut(s) 46, 904
Eco130I CCWWGG 5 cut(s) 21, 117, 418, 837, 1075
Eco147I AGGCCT 2 cut(s) 740, 1277
Eco24I GRGCYC 1 cut(s) 1266
Eco47I GGWCC 3 cut(s) 7, 18, 1449
Eco57I CTGAAG 1 cut(s) 1377
EcoO109I RGGNCCY 1 cut(s) 1449
EcoT14I CCWWGG 5 cut(s) 21, 117, 418, 837, 1075
EcoT38I GRGCYC 1 cut(s) 1266
ErhI CCWWGG 5 cut(s) 21, 117, 418, 837, 1075
FauNDI CATATG 1 cut(s) 501
FbaI TGATCA 1 cut(s) 979
FblI GTMKAC 1 cut(s) 1184
Fnu4HI GCNGC 4 cut(s) 326, 469, 472, 771
FokI GGATG 2 cut(s) 239, 315
FriOI GRGCYC 1 cut(s) 1266
Fsp4HI GCNGC 4 cut(s) 326, 469, 472, 771
FspBI CTAG 6 cut(s) 159, 224, 419, 1352, 1419, 1453
GlaI GCGC 1 cut(s) 905
GluI GCNGC 4 cut(s) 326, 469, 472, 771
GsaI CCCAGC 1 cut(s) 1231
GsuI CTGGAG 2 cut(s) 87, 1224
HaeIII GGCC 7 cut(s) 290, 740, 752, 854, 1067, 1124, 1277
HhaI GCGC 1 cut(s) 906
Hin6I GCGC 1 cut(s) 904
HinP1I GCGC 1 cut(s) 904
HindIII AAGCTT 4 cut(s) 353, 540, 1012, 1338
HinfI GANTC 3 cut(s) 208, 234, 565
HphI GGTGA 3 cut(s) 135, 1030, 1067
Hpy166II GTNNAC 1 cut(s) 1185
Hpy188I TCNGA 6 cut(s) 199, 239, 316, 579, 987, 1430
Hpy188III TCNNGA 9 cut(s) 305, 332, 442, 632, 1082, 1203, 1259, 1271, 1388
Hpy8I GTNNAC 1 cut(s) 1185
Hpy99I CGWCG 1 cut(s) 269
HpyAV CCTTC 3 cut(s) 263, 702, 844
HpyCH4III ACNGT 2 cut(s) 18, 374
HpyCH4IV ACGT 1 cut(s) 93
HpyF10VI GCNNNNNNNGC 4 cut(s) 258, 815, 851, 1020
HpyF3I CTNAG 5 cut(s) 149, 742, 915, 1386, 1427
HpySE526I ACGT 1 cut(s) 93
HspAI GCGC 1 cut(s) 904
Ksp22I TGATCA 1 cut(s) 979
Kzo9I GATC 4 cut(s) 88, 170, 391, 979
LguI GCTCTTC 1 cut(s) 904
LmnI GCTCC 3 cut(s) 272, 428, 1077
Lsp1109I GCAGC 2 cut(s) 337, 782
LweI GCATC 4 cut(s) 261, 337, 595, 1204
MaeI CTAG 6 cut(s) 159, 224, 419, 1352, 1419, 1453
MaeII ACGT 1 cut(s) 93
MaeIII GTNAC 3 cut(s) 451, 715, 1055
MalI GATC 4 cut(s) 90, 172, 393, 981
MboI GATC 4 cut(s) 88, 170, 391, 979
MboII GAAGA 5 cut(s) 33, 243, 921, 1370, 1373
MhlI GDGCHC 2 cut(s) 653, 1266
MlsI TGGCCA 2 cut(s) 752, 1067
MluCI AATT 9 cut(s) 292, 396, 529, 598, 898, 922, 934, 946, 1046
MluNI TGGCCA 2 cut(s) 752, 1067
MlyI GAGTC 2 cut(s) 202, 574
Mox20I TGGCCA 2 cut(s) 752, 1067
MscI TGGCCA 2 cut(s) 752, 1067
MseI TTAA 3 cut(s) 537, 759, 1433
Msp20I TGGCCA 2 cut(s) 752, 1067
MspA1I CMGCKG 1 cut(s) 746
Mva1269I GAATGC 1 cut(s) 818
MwoI GCNNNNNNNGC 4 cut(s) 258, 815, 851, 1020
NcoI CCATGG 2 cut(s) 117, 837
NdeI CATATG 1 cut(s) 501
NdeII GATC 4 cut(s) 88, 170, 391, 979
NlaIV GGNNCC 1 cut(s) 1450
NmeAIII GCCGAG 1 cut(s) 1150
NmuCI GTSAC 2 cut(s) 451, 1055
NspI RCATGY 1 cut(s) 72
PagI TCATGA 3 cut(s) 304, 441, 1258
PaqCI CACCTGC 1 cut(s) 953
PceI AGGCCT 2 cut(s) 740, 1277
PciSI GCTCTTC 1 cut(s) 904
PctI GAATGC 1 cut(s) 818
PfeI GAWTC 1 cut(s) 234
PflMI CCANNNNNTGG 2 cut(s) 227, 1120
PkrI GCNGC 4 cut(s) 327, 470, 473, 772
PleI GAGTC 2 cut(s) 202, 573
PpsI GAGTC 2 cut(s) 202, 573
PpuMI RGGWCCY 1 cut(s) 1449
Psp5II RGGWCCY 1 cut(s) 1449
PspFI CCCAGC 1 cut(s) 1227
PspN4I GGNNCC 1 cut(s) 1450
PspPI GGNCC 3 cut(s) 7, 18, 1449
PspPPI RGGWCCY 1 cut(s) 1449
PstI CTGCAG 1 cut(s) 327
PvuII CAGCTG 1 cut(s) 746
RsaI GTAC 5 cut(s) 29, 154, 345, 612, 686
RsaNI GTAC 5 cut(s) 28, 153, 344, 611, 685
SapI GCTCTTC 1 cut(s) 904
SaqAI TTAA 3 cut(s) 537, 759, 1433
SatI GCNGC 4 cut(s) 326, 469, 472, 771
Sau3AI GATC 4 cut(s) 88, 170, 391, 979
Sau96I GGNCC 3 cut(s) 7, 18, 1449
ScaI AGTACT 2 cut(s) 154, 345
SchI GAGTC 2 cut(s) 202, 574
SduI GDGCHC 2 cut(s) 653, 1266
SfaNI GCATC 4 cut(s) 261, 337, 595, 1204
SfcI CTRYAG 2 cut(s) 323, 549
SinI GGWCC 3 cut(s) 7, 18, 1449
Sse9I AATT 9 cut(s) 292, 396, 529, 598, 898, 922, 934, 946, 1046
SseBI AGGCCT 2 cut(s) 740, 1277
SsiI CCGC 2 cut(s) 468, 471
SspMI CTAG 6 cut(s) 159, 224, 419, 1352, 1419, 1453
StuI AGGCCT 2 cut(s) 740, 1277
StyI CCWWGG 5 cut(s) 21, 117, 418, 837, 1075
TaaI ACNGT 2 cut(s) 18, 374
TaiI ACGT 1 cut(s) 96
TaqI TCGA 1 cut(s) 1043
TaqII GACCGA 1 cut(s) 1273
TasI AATT 9 cut(s) 292, 396, 529, 598, 898, 922, 934, 946, 1046
TatI WGTACW 4 cut(s) 27, 152, 343, 684
TauI GCSGC 2 cut(s) 471, 474
TfiI GAWTC 1 cut(s) 234
Tru1I TTAA 3 cut(s) 537, 759, 1433
Tru9I TTAA 3 cut(s) 537, 759, 1433
TscAI CASTG 4 cut(s) 394, 562, 816, 900
TseFI GTSAC 2 cut(s) 451, 1055
TseI GCWGC 2 cut(s) 325, 770
Tsp45I GTSAC 2 cut(s) 451, 1055
TspDTI ATGAA 7 cut(s) 77, 575, 651, 811, 1170, 1184, 1247
TspRI CASTG 4 cut(s) 394, 562, 816, 900
Van91I CCANNNNNTGG 2 cut(s) 227, 1120
VpaK11BI GGWCC 3 cut(s) 7, 18, 1449
XapI RAATTY 4 cut(s) 898, 922, 946, 1046
XceI RCATGY 1 cut(s) 72
XcmI CCANNNNNNNNNTGG 1 cut(s) 1082
XmaJI CCTAGG 1 cut(s) 418
XmiI GTMKAC 1 cut(s) 1184
XspI CTAG 6 cut(s) 159, 224, 419, 1352, 1419, 1453
ZrmI AGTACT 2 cut(s) 154, 345
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.