RLG00000011002

Encoded by

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr3
OG0005901
Physical Location & Seq
Reverse (-)
5954426 .. 5955666
1241 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000011002

Sequence Viewer

Length: 750 bp
ATGTTTCGTTATCAAGCTCCTAAATTTGCTCATGATAGTGATGATACATGTAAGCCTAATTTTGACTCCCCATTTGTGTTTTCTCAAAGTGATGCATTCCCACAAGAAGCAACTATGATGGCTTTCTGGAGCTGGTTTCTTAGAATGGGAAAGTGTGCTACAAGAAGAGCTATATTTGATTCCATAGCTATTGCCGAACTTAAGGCCAAAGCAACAGCAACCTCAAGCGTGCCAAAGCCAACAAGTGTGGGGGTTGTTACGACACTCATTTGGAAATGTGTTGCAGCTGCACTTGCCTTCAATGCCAAAAGTACTGATCGGAGGTCATCATCCTTTGATCAGCCACACAGTCAATCTGCGCCGAAGAGCTGTGCCACCATTCTCAGAGAACTGTATGGGAAATTTTCTCTCCACAGTTGCAAGCCTGCAACTGCATCATGCAGCAGCCCTCAAGAGTTTGAGCTGGGTAGCTTGGTAAGTCGAATAAGGGAGGCACTAAACAAATTCGGTGGTGATTTTGTACATAGCCTACGAGGCGATGGAGGGCTTGCTAAACTCGTTGAGCTTTCAAAAGAGACCGGTAGTACTTTCTCTAGTGCAGCATCTGATGGTGGCTTGGATTACATATGTTTTAGCAGCTGGTGCAACTTTGGTCTATATGATGTTGATTTTGGGTGGGGAAAGCCTACATTGTACCACAAAGTTGACTTCATCATAACTCCCTTCGATTGCTTTGCACCCTTTTGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Transferase

Protein Analysis

250

Amino Acids

27.4

Weight (kDa)

8.04

Isoelectric Point (pI)

48.15

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Transferase PF02458 54 - 231 3.4e-15 Transferase family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 3 cut(s) 23, 401, 503
AfaI GTAC 4 cut(s) 313, 522, 586, 695
AflII CTTAAG 1 cut(s) 200
AflIII ACRYGT 1 cut(s) 47
AgeI ACCGGT 1 cut(s) 578
AgsI TTSAA 2 cut(s) 301, 570
Alw26I GTCTC 1 cut(s) 569
AlwNI CAGNNNCTG 1 cut(s) 605
AoxI GGCC 1 cut(s) 204
ApeKI GCWGC 6 cut(s) 284, 287, 441, 444, 599, 636
ApoI RAATTY 3 cut(s) 23, 401, 503
ArsI GACNNNNNNTTYG 2 cut(s) 56, 88
AsiGI ACCGGT 1 cut(s) 578
AspLEI GCGC 1 cut(s) 361
AsuHPI GGTGA 1 cut(s) 524
BbvI GCAGC 6 cut(s) 274, 296, 453, 456, 611, 648
BccI CCATC 3 cut(s) 112, 533, 602
BcgI CGANNNNNNTGC 2 cut(s) 716, 750
BclI TGATCA 1 cut(s) 337
BcoDI GTCTC 1 cut(s) 569
BfaI CTAG 1 cut(s) 594
BfrI CTTAAG 1 cut(s) 200
BglI GCCNNNNNGGC 1 cut(s) 534
BisI GCNGC 6 cut(s) 285, 288, 442, 445, 600, 637
BlsI GCNGC 6 cut(s) 286, 289, 443, 446, 601, 638
BmcAI AGTACT 2 cut(s) 313, 586
BmsI GCATC 3 cut(s) 82, 443, 611
BpmI CTGGAG 1 cut(s) 148
BpuEI CTTGAG 2 cut(s) 208, 435
BsaI GGTCTC 1 cut(s) 569
BsaWI WCCGGW 1 cut(s) 578
Bse118I RCCGGY 1 cut(s) 578
BseGI GGATG 1 cut(s) 329
BseMII CTCAG 1 cut(s) 397
BseXI GCAGC 6 cut(s) 274, 296, 453, 456, 611, 648
BseYI CCCAGC 1 cut(s) 463
BsgI GTGCAG 2 cut(s) 273, 618
BshFI GGCC 1 cut(s) 206
BshTI ACCGGT 1 cut(s) 578
BsiSI CCGG 1 cut(s) 579
BsmAI GTCTC 1 cut(s) 569
BsmI GAATGC 1 cut(s) 95
BsnI GGCC 1 cut(s) 206
Bso31I GGTCTC 1 cut(s) 569
Bsp1407I TGTACA 1 cut(s) 520
Bsp143I GATC 2 cut(s) 316, 337
BspANI GGCC 1 cut(s) 206
BspCNI CTCAG 1 cut(s) 396
BspHI TCATGA 1 cut(s) 31
BspQI GCTCTTC 2 cut(s) 160, 359
BspTI CTTAAG 1 cut(s) 200
BspTNI GGTCTC 1 cut(s) 569
BsrFI RCCGGY 1 cut(s) 578
BsrGI TGTACA 1 cut(s) 520
BssAI RCCGGY 1 cut(s) 578
BssMI GATC 2 cut(s) 316, 337
Bst4CI ACNGT 3 cut(s) 350, 393, 416
Bst6I CTCTTC 2 cut(s) 160, 359
BstAFI CTTAAG 1 cut(s) 200
BstAPI GCANNNNNTGC 1 cut(s) 642
BstAUI TGTACA 1 cut(s) 520
BstC8I GCNNGC 4 cut(s) 230, 422, 426, 549
BstDEI CTNAG 2 cut(s) 140, 383
BstF5I GGATG 1 cut(s) 329
BstHHI GCGC 1 cut(s) 361
BstKTI GATC 2 cut(s) 319, 340
BstMAI GTCTC 1 cut(s) 569
BstMBI GATC 2 cut(s) 316, 337
BstMWI GCNNNNNNNGC 4 cut(s) 293, 302, 534, 642
BstNSI RCATGY 1 cut(s) 51
BstV1I GCAGC 6 cut(s) 274, 296, 453, 456, 611, 648
BsuRI GGCC 1 cut(s) 206
BtgZI GCGATG 1 cut(s) 552
BtsCI GGATG 1 cut(s) 329
Cac8I GCNNGC 4 cut(s) 230, 422, 426, 549
CaiI CAGNNNCTG 1 cut(s) 605
CciI TCATGA 1 cut(s) 31
CfoI GCGC 1 cut(s) 361
Cfr10I RCCGGY 1 cut(s) 578
Csp6I GTAC 4 cut(s) 312, 521, 585, 694
CspAI ACCGGT 1 cut(s) 578
CspCI CAANNNNNGTGG 4 cut(s) 228, 263, 490, 525
CviAII CATG 3 cut(s) 32, 48, 438
CviQI GTAC 4 cut(s) 312, 521, 585, 694
DdeI CTNAG 2 cut(s) 140, 383
DpnI GATC 2 cut(s) 318, 339
DpnII GATC 2 cut(s) 316, 337
Eam1104I CTCTTC 2 cut(s) 160, 359
EarI CTCTTC 2 cut(s) 160, 359
Eco31I GGTCTC 1 cut(s) 569
EcoT22I ATGCAT 1 cut(s) 97
FaeI CATG 3 cut(s) 35, 51, 441
FatI CATG 3 cut(s) 31, 47, 437
FauNDI CATATG 1 cut(s) 626
FbaI TGATCA 1 cut(s) 337
Fnu4HI GCNGC 6 cut(s) 285, 288, 442, 445, 600, 637
FokI GGATG 1 cut(s) 316
Fsp4HI GCNGC 6 cut(s) 285, 288, 442, 445, 600, 637
FspBI CTAG 1 cut(s) 594
GlaI GCGC 1 cut(s) 360
GluI GCNGC 6 cut(s) 285, 288, 442, 445, 600, 637
GsaI CCCAGC 1 cut(s) 467
GsuI CTGGAG 1 cut(s) 148
HaeIII GGCC 1 cut(s) 206
HapII CCGG 1 cut(s) 579
HhaI GCGC 1 cut(s) 361
Hin1II CATG 3 cut(s) 35, 51, 441
Hin6I GCGC 1 cut(s) 359
HinP1I GCGC 1 cut(s) 359
HincII GTYRAC 1 cut(s) 706
HindII GTYRAC 1 cut(s) 706
HinfI GANTC 2 cut(s) 65, 179
HpaII CCGG 1 cut(s) 579
HphI GGTGA 1 cut(s) 524
Hpy166II GTNNAC 1 cut(s) 706
Hpy188I TCNGA 3 cut(s) 321, 386, 607
Hpy188III TCNNGA 3 cut(s) 32, 127, 452
Hpy8I GTNNAC 1 cut(s) 706
HpyAV CCTTC 2 cut(s) 307, 733
HpyCH4III ACNGT 3 cut(s) 350, 393, 416
HpyF10VI GCNNNNNNNGC 4 cut(s) 293, 302, 534, 642
HpyF3I CTNAG 2 cut(s) 140, 383
Hsp92II CATG 3 cut(s) 35, 51, 441
HspAI GCGC 1 cut(s) 359
Ksp22I TGATCA 1 cut(s) 337
Kzo9I GATC 2 cut(s) 316, 337
LguI GCTCTTC 2 cut(s) 160, 359
LmnI GCTCC 2 cut(s) 22, 129
LpnPI CCDG 6 cut(s) 112, 118, 438, 449, 592, 625
Lsp1109I GCAGC 6 cut(s) 274, 296, 453, 456, 611, 648
LweI GCATC 3 cut(s) 82, 443, 611
MaeI CTAG 1 cut(s) 594
MaeIII GTNAC 1 cut(s) 256
MalI GATC 2 cut(s) 318, 339
MboI GATC 2 cut(s) 316, 337
MboII GAAGA 2 cut(s) 177, 376
MluCI AATT 4 cut(s) 23, 58, 401, 503
MlyI GAGTC 1 cut(s) 59
MnlI CCTC 6 cut(s) 232, 315, 459, 484, 527, 536
Mph1103I ATGCAT 1 cut(s) 97
MseI TTAA 1 cut(s) 201
MslI CAYNNNNRTG 1 cut(s) 36
MspA1I CMGCKG 2 cut(s) 287, 639
MspCI CTTAAG 1 cut(s) 200
MspI CCGG 1 cut(s) 579
Mva1269I GAATGC 1 cut(s) 95
MwoI GCNNNNNNNGC 4 cut(s) 293, 302, 534, 642
NdeI CATATG 1 cut(s) 626
NdeII GATC 2 cut(s) 316, 337
NlaIII CATG 3 cut(s) 35, 51, 441
NsiI ATGCAT 1 cut(s) 97
NspI RCATGY 1 cut(s) 51
PagI TCATGA 1 cut(s) 31
PciI ACATGT 1 cut(s) 47
PciSI GCTCTTC 2 cut(s) 160, 359
PctI GAATGC 1 cut(s) 95
PfeI GAWTC 1 cut(s) 179
PinAI ACCGGT 1 cut(s) 578
PkrI GCNGC 6 cut(s) 286, 289, 443, 446, 601, 638
PleI GAGTC 1 cut(s) 59
PpsI GAGTC 1 cut(s) 59
PscI ACATGT 1 cut(s) 47
PspFI CCCAGC 1 cut(s) 463
PstNI CAGNNNCTG 1 cut(s) 605
PvuII CAGCTG 2 cut(s) 287, 639
RsaI GTAC 4 cut(s) 313, 522, 586, 695
RsaNI GTAC 4 cut(s) 312, 521, 585, 694
RseI CAYNNNNRTG 1 cut(s) 36
SapI GCTCTTC 2 cut(s) 160, 359
SaqAI TTAA 1 cut(s) 201
SatI GCNGC 6 cut(s) 285, 288, 442, 445, 600, 637
Sau3AI GATC 2 cut(s) 316, 337
ScaI AGTACT 2 cut(s) 313, 586
SchI GAGTC 1 cut(s) 59
SfaNI GCATC 3 cut(s) 82, 443, 611
SmiMI CAYNNNNRTG 1 cut(s) 36
SmlI CTYRAG 3 cut(s) 200, 223, 450
SmoI CTYRAG 3 cut(s) 200, 223, 450
Sse9I AATT 4 cut(s) 23, 58, 401, 503
SspMI CTAG 1 cut(s) 594
TaaI ACNGT 3 cut(s) 350, 393, 416
TaqI TCGA 2 cut(s) 481, 726
TasI AATT 4 cut(s) 23, 58, 401, 503
TatI WGTACW 3 cut(s) 311, 520, 584
TfiI GAWTC 1 cut(s) 179
Tru1I TTAA 1 cut(s) 201
Tru9I TTAA 1 cut(s) 201
TseI GCWGC 6 cut(s) 284, 287, 441, 444, 599, 636
TspDTI ATGAA 1 cut(s) 700
Vha464I CTTAAG 1 cut(s) 200
XapI RAATTY 3 cut(s) 23, 401, 503
XceI RCATGY 1 cut(s) 51
XspI CTAG 1 cut(s) 594
ZrmI AGTACT 2 cut(s) 313, 586
Zsp2I ATGCAT 1 cut(s) 97
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.