Rroxscaffold_7G00163940

Encoded by

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
OG0005901
Physical Location & Seq
Reverse (-)
6068903 .. 6070363
1461 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_7G00163940.1

Sequence Viewer

Length: 1461 bp
ATGGAGGTCCAAATACTGTCCAAGGAGTACATCAAGCCCTCTTCCCCAACGCCTCCACACTTGAACACATACAGATTTTCTCTCTTGGATCACGTAATGCCTCCAGTTTATGTTCCCATGGTCTTGTTCTATCCTCCTGTTTCACCTCTCAGTACTACTAGAAGTGAAAGATCACAATCACTAAAACAATCTCTCTCGGAAACCCTGACTCTCTTTTACCCACTAGCTGGTAGAATCAGAGACTACCTTTGCATCGATTGCAACGACGAAGGAGCTTATTACATAGAGGCCGATGTCAAGTCTCATGACCTCTCGGAGTTTCTGCAGCATCCTGACTTGTCAGTACTCCCTAAGCTTCTTCCAACTTTCAACAGTTTGCTTGATTACACTGATCTAATTTCAAATGCCACCACTGGCCTAGAAGGAGGAGGAGGAGCTGATGTAGTCATGATCCAAGTGACTAACTTTGCCTGCGGCGGGTTTGTGATTGGAGTGTTTGTTTCTCATATGATTGTTGATGGCATTGCCATCAGCAATTTTCTTAAAGCTTGGGCTGCAGCCACTGCACACAGTCTATCAGGTCAGAGTGTTCATGTCTTGCCTGATTTCGATGCTGCAACATTGTTCCCTCCTATTCTTGATGAACAAGGTAAGGTCACACACCCAAGAGAAGCAACCATGAGGGGATTGTACAGGCGTTTTGCCAAGAGAGGAAGGTGTGTTACGAACAGATTTGTATTTGAGGCCTCAGCTGTGACCAAACTTAAAGAGCAAGCAGCAACATCATCATTACAACATCCAAGTCGGGTGGAGGCAGTGTCAGCATTCATCTGGAAATGCGCCACGGCTGCTTGGAAGGCCAAGTCTGGTCAATCTGCACCAAGTTTGATAACCCACGCAGTGAATTTGCGCCGAAGAGCTGAGCCGAATTTTTCACAAAATTGTATGGGGAATTTTGTTTGTTTGGCAGGTGCAATAGCAAATGATCATCAGAGAGAACAGGAGTTAGAGTTGTCAAGCTTGGTGAGCAAGATGAGGGAAGCAACATCGAAATTCAATGGTAACTTTGTGGCCAAGCTCCAAGGTCAAGATGGGTTAGCCACTATTAGTAAGGTTTTCCAAGACATGGCCGAGGCTATCACACTCTCCACTAATGGGGACGATCAGGTGGAGATGAACTTTATTGGGTATACCAGCATTGCCTACTCTGGAGTGTATGATGCCGATTTCGGCTGGGGAAAGCCTCTGTGGGTCGTTCCAGTTCATGAGCCCTGTCACGAGGCCTTTTCGGTCAATGTGGTTCGTTTGATGGATACAGGAGAATGGGGAAACAATGGTTTTGAAGCTTGGATTTCTCTAGCTGAAGAAGAAATGGCAATGTTGCAAATCAATCAGGACTTGCTTGCTTTTGCTTCTCTCAATCCTAGTCCTCTCAGATTAAGCCAAAATACTGGGTCCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Transferase

Protein Analysis

486

Amino Acids

53.45

Weight (kDa)

5.56

Isoelectric Point (pI)

37.71

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Transferase PF02458 1 - 466 1.2e-78 Transferase family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 959
Acc36I ACCTGC 1 cut(s) 959
AccB7I CCANNNNNTGG 2 cut(s) 227, 1126
AccI GTMKAC 1 cut(s) 1190
AciI CCGC 2 cut(s) 474, 477
AclWI GGATC 2 cut(s) 96, 445
AcoI YGGCCR 2 cut(s) 1071, 1128
AcsI RAATTY 4 cut(s) 904, 928, 952, 1052
AcuI CTGAAG 1 cut(s) 1383
AdeI CACNNNGTG 1 cut(s) 901
AfaI GTAC 4 cut(s) 29, 154, 345, 692
AfiI CCNNNNNNNGG 4 cut(s) 227, 477, 1126, 1155
AgsI TTSAA 5 cut(s) 64, 370, 402, 1057, 1343
Alw26I GTCTC 2 cut(s) 234, 306
AlwI GGATC 2 cut(s) 96, 445
AlwNI CAGNNNCTG 1 cut(s) 563
AoxI GGCC 7 cut(s) 288, 415, 744, 858, 1071, 1128, 1281
ApeKI GCWGC 6 cut(s) 325, 554, 557, 614, 776, 848
ApoI RAATTY 4 cut(s) 904, 928, 952, 1052
AspLEI GCGC 2 cut(s) 842, 912
AspS9I GGNCC 2 cut(s) 7, 1455
AsuHPI GGTGA 2 cut(s) 135, 1036
AvaII GGWCC 2 cut(s) 7, 1455
BalI TGGCCA 1 cut(s) 1073
BanII GRGCYC 1 cut(s) 1272
BarI GAAGNNNNNNTAC 2 cut(s) 706, 738
BauI CACGAG 1 cut(s) 1277
BbvCI CCTCAGC 1 cut(s) 748
BbvI GCAGC 6 cut(s) 337, 541, 569, 601, 788, 835
BccI CCATC 4 cut(s) 512, 536, 1085, 1303
BceAI ACGGC 1 cut(s) 861
BciVI GTATCC 1 cut(s) 1306
BclI TGATCA 1 cut(s) 985
BcoDI GTCTC 2 cut(s) 234, 306
BfaI CTAG 5 cut(s) 159, 224, 419, 1358, 1425
BfmI CTRYAG 2 cut(s) 323, 555
BfuAI ACCTGC 1 cut(s) 959
BfuI GTATCC 1 cut(s) 1306
BisI GCNGC 7 cut(s) 326, 475, 555, 558, 615, 777, 849
BlpI GCTNAGC 1 cut(s) 921
BlsI GCNGC 7 cut(s) 327, 476, 556, 559, 616, 778, 850
BmcAI AGTACT 2 cut(s) 154, 345
Bme18I GGWCC 2 cut(s) 7, 1455
BmgT120I GGNCC 2 cut(s) 7, 1455
BmiI GGNNCC 1 cut(s) 1456
BmrI ACTGGG 1 cut(s) 1461
BmsI GCATC 4 cut(s) 261, 337, 601, 1210
BmuI ACTGGG 1 cut(s) 1461
BpmI CTGGAG 2 cut(s) 87, 1230
Bpu10I CCTNAGC 2 cut(s) 351, 748
Bpu1102I GCTNAGC 1 cut(s) 921
Bsa29I ATCGAT 1 cut(s) 255
BsaAI YACGTR 1 cut(s) 94
BsaBI GATNNNNATC 1 cut(s) 175
BsaJI CCNNGG 5 cut(s) 21, 117, 843, 1081, 1131
BsaXI ACNNNNNCTCC 8 cut(s) 426, 456, 483, 513, 803, 833, 995, 1025
Bsc4I CCNNNNNNNGG 4 cut(s) 227, 477, 1126, 1155
Bse1I ACTGG 4 cut(s) 104, 418, 1259, 1456
Bse3DI GCAATG 3 cut(s) 522, 1197, 1383
Bse8I GATNNNNATC 1 cut(s) 175
BseCI ATCGAT 1 cut(s) 255
BseDI CCNNGG 5 cut(s) 21, 117, 843, 1081, 1131
BseGI GGATG 2 cut(s) 328, 796
BseJI GATNNNNATC 1 cut(s) 175
BseLI CCNNNNNNNGG 4 cut(s) 227, 477, 1126, 1155
BseMI GCAATG 3 cut(s) 522, 1197, 1383
BseMII CTCAG 4 cut(s) 163, 762, 912, 1447
BseNI ACTGG 4 cut(s) 104, 418, 1259, 1456
BseRI GAGGAG 3 cut(s) 441, 444, 447
BseXI GCAGC 6 cut(s) 337, 541, 569, 601, 788, 835
BseYI CCCAGC 1 cut(s) 1233
BsgI GTGCAG 2 cut(s) 549, 861
BshFI GGCC 7 cut(s) 290, 417, 746, 860, 1073, 1130, 1283
BshVI ATCGAT 1 cut(s) 255
BslFI GGGAC 1 cut(s) 1172
BslI CCNNNNNNNGG 4 cut(s) 227, 477, 1126, 1155
BsmAI GTCTC 2 cut(s) 234, 306
BsmFI GGGAC 1 cut(s) 1172
BsmI GAATGC 1 cut(s) 824
BsnI GGCC 7 cut(s) 290, 417, 746, 860, 1073, 1130, 1283
Bsp1286I GDGCHC 1 cut(s) 1272
Bsp1407I TGTACA 1 cut(s) 690
Bsp143I GATC 6 cut(s) 88, 170, 391, 450, 985, 1162
Bsp1720I GCTNAGC 1 cut(s) 921
Bsp19I CCATGG 1 cut(s) 117
BspACI CCGC 2 cut(s) 474, 477
BspANI GGCC 7 cut(s) 290, 417, 746, 860, 1073, 1130, 1283
BspCNI CTCAG 4 cut(s) 162, 761, 913, 1446
BspDI ATCGAT 1 cut(s) 255
BspHI TCATGA 3 cut(s) 304, 447, 1264
BspLI GGNNCC 1 cut(s) 1456
BspMAI CTGCAG 2 cut(s) 327, 559
BspMI ACCTGC 1 cut(s) 959
BspPI GGATC 2 cut(s) 96, 445
BspQI GCTCTTC 1 cut(s) 910
BsrDI GCAATG 3 cut(s) 522, 1197, 1383
BsrGI TGTACA 1 cut(s) 690
BsrI ACTGG 4 cut(s) 104, 418, 1259, 1456
BssECI CCNNGG 5 cut(s) 21, 117, 843, 1081, 1131
BssMI GATC 6 cut(s) 88, 170, 391, 450, 985, 1162
BssNAI GTATAC 1 cut(s) 1191
BssSI CACGAG 1 cut(s) 1277
BssT1I CCWWGG 3 cut(s) 21, 117, 1081
Bst1107I GTATAC 1 cut(s) 1191
Bst2BI CACGAG 1 cut(s) 1277
Bst4CI ACNGT 3 cut(s) 18, 374, 572
Bst6I CTCTTC 2 cut(s) 46, 910
BstAPI GCANNNNNTGC 2 cut(s) 258, 563
BstAUI TGTACA 1 cut(s) 690
BstBAI YACGTR 1 cut(s) 94
BstC8I GCNNGC 3 cut(s) 472, 774, 1404
BstDEI CTNAG 5 cut(s) 149, 351, 748, 921, 1433
BstDSI CCRYGG 2 cut(s) 117, 843
BstF5I GGATG 2 cut(s) 328, 796
BstHHI GCGC 2 cut(s) 842, 912
BstKTI GATC 6 cut(s) 91, 173, 394, 453, 988, 1165
BstMAI GTCTC 2 cut(s) 234, 306
BstMBI GATC 6 cut(s) 88, 170, 391, 450, 985, 1162
BstMWI GCNNNNNNNGC 7 cut(s) 258, 554, 563, 821, 848, 857, 1026
BstSFI CTRYAG 2 cut(s) 323, 555
BstV1I GCAGC 6 cut(s) 337, 541, 569, 601, 788, 835
BstXI CCANNNNNNTGG 1 cut(s) 1451
BstZ17I GTATAC 1 cut(s) 1191
Bsu15I ATCGAT 1 cut(s) 255
BsuI GTATCC 1 cut(s) 1306
BsuRI GGCC 7 cut(s) 290, 417, 746, 860, 1073, 1130, 1283
BsuTUI ATCGAT 1 cut(s) 255
BtgI CCRYGG 2 cut(s) 117, 843
BtsCI GGATG 2 cut(s) 328, 796
BtsI GCAGTG 3 cut(s) 561, 822, 906
BtsIMutI CAGTG 5 cut(s) 387, 411, 561, 822, 906
BveI ACCTGC 1 cut(s) 959
Cac8I GCNNGC 3 cut(s) 472, 774, 1404
CaiI CAGNNNCTG 1 cut(s) 563
CciI TCATGA 3 cut(s) 304, 447, 1264
CfoI GCGC 2 cut(s) 842, 912
Cfr13I GGNCC 2 cut(s) 7, 1455
ClaI ATCGAT 1 cut(s) 255
Csp6I GTAC 4 cut(s) 28, 153, 344, 691
CspCI CAANNNNNGTGG 2 cut(s) 789, 824
CviAII CATG 7 cut(s) 118, 305, 448, 593, 679, 1126, 1265
CviQI GTAC 4 cut(s) 28, 153, 344, 691
DdeI CTNAG 5 cut(s) 149, 351, 748, 921, 1433
DpnI GATC 6 cut(s) 90, 172, 393, 452, 987, 1164
DpnII GATC 6 cut(s) 88, 170, 391, 450, 985, 1162
DraIII CACNNNGTG 1 cut(s) 901
EaeI YGGCCR 2 cut(s) 1071, 1128
Eam1104I CTCTTC 2 cut(s) 46, 910
EarI CTCTTC 2 cut(s) 46, 910
Eco130I CCWWGG 3 cut(s) 21, 117, 1081
Eco147I AGGCCT 2 cut(s) 746, 1283
Eco24I GRGCYC 1 cut(s) 1272
Eco47I GGWCC 2 cut(s) 7, 1455
Eco57I CTGAAG 1 cut(s) 1383
EcoO109I RGGNCCY 1 cut(s) 1455
EcoT14I CCWWGG 3 cut(s) 21, 117, 1081
EcoT38I GRGCYC 1 cut(s) 1272
ErhI CCWWGG 3 cut(s) 21, 117, 1081
FaeI CATG 7 cut(s) 121, 308, 451, 596, 682, 1129, 1268
FaqI GGGAC 1 cut(s) 1172
FatI CATG 7 cut(s) 117, 304, 447, 592, 678, 1125, 1264
FauI CCCGC 1 cut(s) 470
FauNDI CATATG 1 cut(s) 507
FbaI TGATCA 1 cut(s) 985
FblI GTMKAC 1 cut(s) 1190
Fnu4HI GCNGC 7 cut(s) 326, 475, 555, 558, 615, 777, 849
FokI GGATG 2 cut(s) 315, 783
FriOI GRGCYC 1 cut(s) 1272
Fsp4HI GCNGC 7 cut(s) 326, 475, 555, 558, 615, 777, 849
FspBI CTAG 5 cut(s) 159, 224, 419, 1358, 1425
GlaI GCGC 2 cut(s) 841, 911
GluI GCNGC 7 cut(s) 326, 475, 555, 558, 615, 777, 849
GsaI CCCAGC 1 cut(s) 1237
GsuI CTGGAG 2 cut(s) 87, 1230
HaeIII GGCC 7 cut(s) 290, 417, 746, 860, 1073, 1130, 1283
HhaI GCGC 2 cut(s) 842, 912
Hin1II CATG 7 cut(s) 121, 308, 451, 596, 682, 1129, 1268
Hin6I GCGC 2 cut(s) 840, 910
HinP1I GCGC 2 cut(s) 840, 910
HindIII AAGCTT 4 cut(s) 353, 546, 1018, 1344
HinfI GANTC 2 cut(s) 208, 234
HphI GGTGA 2 cut(s) 135, 1036
Hpy166II GTNNAC 1 cut(s) 1191
Hpy188I TCNGA 6 cut(s) 199, 239, 316, 585, 993, 1436
Hpy8I GTNNAC 1 cut(s) 1191
Hpy99I CGWCG 1 cut(s) 269
HpyAV CCTTC 4 cut(s) 263, 416, 708, 850
HpyCH4III ACNGT 3 cut(s) 18, 374, 572
HpyCH4IV ACGT 1 cut(s) 93
HpyCH4V TGCA 9 cut(s) 252, 261, 325, 557, 566, 617, 878, 974, 1384
HpyF10VI GCNNNNNNNGC 7 cut(s) 258, 554, 563, 821, 848, 857, 1026
HpyF3I CTNAG 5 cut(s) 149, 351, 748, 921, 1433
HpySE526I ACGT 1 cut(s) 93
Hsp92II CATG 7 cut(s) 121, 308, 451, 596, 682, 1129, 1268
HspAI GCGC 2 cut(s) 840, 910
Ksp22I TGATCA 1 cut(s) 985
Kzo9I GATC 6 cut(s) 88, 170, 391, 450, 985, 1162
LguI GCTCTTC 1 cut(s) 910
LmnI GCTCC 3 cut(s) 272, 434, 1083
Lsp1109I GCAGC 6 cut(s) 337, 541, 569, 601, 788, 835
LweI GCATC 4 cut(s) 261, 337, 601, 1210
MaeI CTAG 5 cut(s) 159, 224, 419, 1358, 1425
MaeII ACGT 1 cut(s) 93
MaeIII GTNAC 6 cut(s) 457, 655, 721, 754, 1061, 1274
MalI GATC 6 cut(s) 90, 172, 393, 452, 987, 1164
MboI GATC 6 cut(s) 88, 170, 391, 450, 985, 1162
MboII GAAGA 5 cut(s) 33, 350, 927, 1376, 1379
MhlI GDGCHC 1 cut(s) 1272
MlsI TGGCCA 1 cut(s) 1073
MluCI AATT 7 cut(s) 396, 535, 904, 928, 940, 952, 1052
MluNI TGGCCA 1 cut(s) 1073
MlyI GAGTC 1 cut(s) 202
MmeI TCCRAC 1 cut(s) 386
Mox20I TGGCCA 1 cut(s) 1073
MscI TGGCCA 1 cut(s) 1073
MseI TTAA 3 cut(s) 543, 765, 1439
Msp20I TGGCCA 1 cut(s) 1073
MspA1I CMGCKG 1 cut(s) 752
Mva1269I GAATGC 1 cut(s) 824
MwoI GCNNNNNNNGC 7 cut(s) 258, 554, 563, 821, 848, 857, 1026
NcoI CCATGG 1 cut(s) 117
NdeI CATATG 1 cut(s) 507
NdeII GATC 6 cut(s) 88, 170, 391, 450, 985, 1162
NlaIII CATG 7 cut(s) 121, 308, 451, 596, 682, 1129, 1268
NlaIV GGNNCC 1 cut(s) 1456
NmeAIII GCCGAG 1 cut(s) 1156
NmuCI GTSAC 4 cut(s) 457, 655, 754, 1274
PagI TCATGA 3 cut(s) 304, 447, 1264
PaqCI CACCTGC 1 cut(s) 959
PceI AGGCCT 2 cut(s) 746, 1283
PciSI GCTCTTC 1 cut(s) 910
PcsI WCGNNNNNNNCGW 1 cut(s) 261
PctI GAATGC 1 cut(s) 824
PfeI GAWTC 1 cut(s) 234
PflMI CCANNNNNTGG 2 cut(s) 227, 1126
PkrI GCNGC 7 cut(s) 327, 476, 556, 559, 616, 778, 850
PleI GAGTC 1 cut(s) 202
PpsI GAGTC 1 cut(s) 202
Ppu21I YACGTR 1 cut(s) 94
PpuMI RGGWCCY 1 cut(s) 1455
Psp5II RGGWCCY 1 cut(s) 1455
PspFI CCCAGC 1 cut(s) 1233
PspN4I GGNNCC 1 cut(s) 1456
PspPI GGNCC 2 cut(s) 7, 1455
PspPPI RGGWCCY 1 cut(s) 1455
PstI CTGCAG 2 cut(s) 327, 559
PstNI CAGNNNCTG 1 cut(s) 563
PvuII CAGCTG 1 cut(s) 752
RsaI GTAC 4 cut(s) 29, 154, 345, 692
RsaNI GTAC 4 cut(s) 28, 153, 344, 691
SapI GCTCTTC 1 cut(s) 910
SaqAI TTAA 3 cut(s) 543, 765, 1439
SatI GCNGC 7 cut(s) 326, 475, 555, 558, 615, 777, 849
Sau3AI GATC 6 cut(s) 88, 170, 391, 450, 985, 1162
Sau96I GGNCC 2 cut(s) 7, 1455
ScaI AGTACT 2 cut(s) 154, 345
SchI GAGTC 1 cut(s) 202
SduI GDGCHC 1 cut(s) 1272
SfaNI GCATC 4 cut(s) 261, 337, 601, 1210
SfcI CTRYAG 2 cut(s) 323, 555
SinI GGWCC 2 cut(s) 7, 1455
Sse9I AATT 7 cut(s) 396, 535, 904, 928, 940, 952, 1052
SseBI AGGCCT 2 cut(s) 746, 1283
SsiI CCGC 2 cut(s) 474, 477
SspMI CTAG 5 cut(s) 159, 224, 419, 1358, 1425
StuI AGGCCT 2 cut(s) 746, 1283
StyI CCWWGG 3 cut(s) 21, 117, 1081
TaaI ACNGT 3 cut(s) 18, 374, 572
TaiI ACGT 1 cut(s) 96
TaqI TCGA 3 cut(s) 255, 609, 1049
TaqII GACCGA 1 cut(s) 1279
TasI AATT 7 cut(s) 396, 535, 904, 928, 940, 952, 1052
TatI WGTACW 4 cut(s) 27, 152, 343, 690
TauI GCSGC 1 cut(s) 477
TfiI GAWTC 1 cut(s) 234
Tru1I TTAA 3 cut(s) 543, 765, 1439
Tru9I TTAA 3 cut(s) 543, 765, 1439
TscAI CASTG 5 cut(s) 394, 418, 568, 822, 906
TseFI GTSAC 4 cut(s) 457, 655, 754, 1274
TseI GCWGC 6 cut(s) 325, 554, 557, 614, 776, 848
Tsp45I GTSAC 4 cut(s) 457, 655, 754, 1274
TspDTI ATGAA 5 cut(s) 581, 657, 817, 1190, 1253
TspRI CASTG 5 cut(s) 394, 418, 568, 822, 906
Van91I CCANNNNNTGG 2 cut(s) 227, 1126
VpaK11BI GGWCC 2 cut(s) 7, 1455
XapI RAATTY 4 cut(s) 904, 928, 952, 1052
XcmI CCANNNNNNNNNTGG 1 cut(s) 1088
XmiI GTMKAC 1 cut(s) 1190
XspI CTAG 5 cut(s) 159, 224, 419, 1358, 1425
ZrmI AGTACT 2 cut(s) 154, 345
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.