Rh6BG459800

Encoded by

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6B
OG0005901
Physical Location & Seq
Reverse (-)
67077461 .. 67080045
2585 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6BG459800.1

Sequence Viewer

Length: 1470 bp
ATGGAGGTCCAAATACTGTCCAAGGAGTACATCAAGCCCTCTTCCCCAACGCCTCCACACATAAACACATACAGATTTTCCCTCTTGGATCACGTAATGCCTCCAGTTTATGTTCCTATGGTCTTGTTCTATCCTCCTGTTTCACCTCTCAGTACTACTAGAAGTGAAAGATCACAAGCACTGAAACAATCTCTCTCGGAAACCCTGACTCGCTTTTACCCACTAGCTGGTAGAATCAGAGACTACCTTTGCATCGACTGCAACGACGAAGGAGCTTATTACATAGAGGCCGATGTCAAGTCTCATGACCTCTCGGAGTTTCTGCAGCATCCTGACTTGTCAGTACTCCCTAAGCTTCTCCCAACTTTCAACAGTTTGCTTGATTACACTGATCTAATTTCAAATGCCACCACTGGCCTAGAAGGAGAAGGAGGAGCTGATGTAGTCATGATCCAAGTGACTAACTTTGCCTGCGGCGGGTTTGTGATTGGAGTGTTTGTTTCTCATATGATTGTTGATGGCATTGCCATCAGCAATTTTCTTAAAGCTTGGGCTGCAGCCACTGCACAGAGTCTATCAGGTCAGAGTGTTCATGTATTGCCTGATTTTGATGCTGCAACATTGTTCCCTCCTATTCTTGATGAACAAGGTAAGAGCACACACCCAAGAGAAGCAACCATGAGGGGATTGTACAGGCGTTTTGCCAAGAGAGGAAGGTGTATTACGAACAGATTTGTGTTTGAGGCCTCAGCTGTGGCCAAACTTAAAGAGCAAGCAGCAACATCATCATTACAAAATCCAAGTCGGGTGGAGGCAGTGTCAGCATTCATCTGGAAATGCGCCACGGCTGCTTGGAAGGCCAAGTCTGGTCAATCTGCACCCAGTTTGATAACCCACGCAGTGAATTTGCGCCGAAGAGCTGAGCCGAATTTTTCCCAAAATTGTATGGGGAATTTTGTTTGTTTGGCAGGTGCAATAGCAAATGATCATCAGAGAGAACAGGAGTTAGAGTTGTCAAGCTTGGTGAGCAAGATGAGGGAAGCAACATCGAAATTCAATGGTGACTTGGTGGCCAAGCTCCAAGGTCAAGATGGGTATCATGGGTTAGCCACTATTAGTAAGGTTTTCCAAGACATGGCCGAGGCTATCACACTCTCCACTAATGGGGATGATCAGGTGGAGATGAACTTTATTGGGTATACCAGCATTGCCTACTCTGGAGTGTATGATGCCGATTTCGGCTGGGGAAAGCCTCTGTGGGTCGTTCCAGTTCATGAGCCCTGTCACGAGGCCTTTTCGGTCAATGTGGTTCGTTTGATGGATACAGGAGAATGGGGAAACAATGGTTTTGAAGCTTGGATTTCTCTAGCTGAAGAAGAAATGGCAATGTTGCAAATCAATCAGGACTTGCTTGCTTTTGCTTCTCTCAATCCTAGTCCTCTCAGATTAAGCCAAAATACTGGGTCCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Transferase

Protein Analysis

489

Amino Acids

53.81

Weight (kDa)

5.43

Isoelectric Point (pI)

39.15

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Transferase PF02458 1 - 469 1.4e-78 Transferase family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 959
Acc36I ACCTGC 1 cut(s) 959
AccB7I CCANNNNNTGG 2 cut(s) 227, 1135
AccI GTMKAC 1 cut(s) 1199
AciI CCGC 2 cut(s) 474, 477
AclWI GGATC 2 cut(s) 96, 445
AcoI YGGCCR 3 cut(s) 756, 1071, 1137
AcsI RAATTY 4 cut(s) 904, 928, 952, 1052
AcuI CTGAAG 1 cut(s) 1392
AdeI CACNNNGTG 1 cut(s) 901
AfaI GTAC 4 cut(s) 29, 154, 345, 692
AfiI CCNNNNNNNGG 4 cut(s) 227, 477, 1135, 1164
AgsI TTSAA 4 cut(s) 370, 402, 1057, 1352
Alw21I GWGCWC 1 cut(s) 659
Alw26I GTCTC 2 cut(s) 234, 306
AlwI GGATC 2 cut(s) 96, 445
AlwNI CAGNNNCTG 1 cut(s) 563
AoxI GGCC 8 cut(s) 288, 415, 744, 756, 858, 1071, 1137, 1290
ApeKI GCWGC 6 cut(s) 325, 554, 557, 614, 776, 848
ApoI RAATTY 4 cut(s) 904, 928, 952, 1052
ArsI GACNNNNNNTTYG 2 cut(s) 787, 819
AspLEI GCGC 2 cut(s) 842, 912
AspS9I GGNCC 2 cut(s) 7, 1464
AsuHPI GGTGA 3 cut(s) 135, 1036, 1073
AvaII GGWCC 2 cut(s) 7, 1464
BalI TGGCCA 2 cut(s) 758, 1073
BanII GRGCYC 1 cut(s) 1281
BarI GAAGNNNNNNTAC 2 cut(s) 706, 738
BauI CACGAG 1 cut(s) 1286
Bbv12I GWGCWC 1 cut(s) 659
BbvCI CCTCAGC 1 cut(s) 748
BbvI GCAGC 6 cut(s) 337, 541, 569, 601, 788, 835
BccI CCATC 4 cut(s) 512, 536, 1085, 1312
BceAI ACGGC 1 cut(s) 861
BciVI GTATCC 1 cut(s) 1315
BclI TGATCA 2 cut(s) 985, 1171
BcoDI GTCTC 2 cut(s) 234, 306
BfaI CTAG 6 cut(s) 159, 224, 419, 1367, 1434, 1468
BfmI CTRYAG 2 cut(s) 323, 555
BfuAI ACCTGC 1 cut(s) 959
BfuI GTATCC 1 cut(s) 1315
BisI GCNGC 7 cut(s) 326, 475, 555, 558, 615, 777, 849
BlpI GCTNAGC 1 cut(s) 921
BlsI GCNGC 7 cut(s) 327, 476, 556, 559, 616, 778, 850
BmcAI AGTACT 2 cut(s) 154, 345
Bme18I GGWCC 2 cut(s) 7, 1464
BmgT120I GGNCC 2 cut(s) 7, 1464
BmiI GGNNCC 1 cut(s) 1465
BmrI ACTGGG 2 cut(s) 876, 1470
BmsI GCATC 4 cut(s) 261, 337, 601, 1219
BmuI ACTGGG 2 cut(s) 876, 1470
BpmI CTGGAG 2 cut(s) 87, 1239
Bpu10I CCTNAGC 2 cut(s) 351, 748
Bpu1102I GCTNAGC 1 cut(s) 921
BsaAI YACGTR 1 cut(s) 94
BsaBI GATNNNNATC 1 cut(s) 1095
BsaJI CCNNGG 4 cut(s) 21, 843, 1081, 1140
BsaXI ACNNNNNCTCC 8 cut(s) 426, 456, 483, 513, 803, 833, 995, 1025
Bsc4I CCNNNNNNNGG 4 cut(s) 227, 477, 1135, 1164
Bse1I ACTGG 5 cut(s) 104, 418, 882, 1268, 1465
Bse3DI GCAATG 3 cut(s) 522, 1206, 1392
Bse8I GATNNNNATC 1 cut(s) 1095
BseDI CCNNGG 4 cut(s) 21, 843, 1081, 1140
BseGI GGATG 2 cut(s) 328, 1174
BseJI GATNNNNATC 1 cut(s) 1095
BseLI CCNNNNNNNGG 4 cut(s) 227, 477, 1135, 1164
BseMI GCAATG 3 cut(s) 522, 1206, 1392
BseMII CTCAG 4 cut(s) 163, 762, 912, 1456
BseNI ACTGG 5 cut(s) 104, 418, 882, 1268, 1465
BseRI GAGGAG 1 cut(s) 447
BseXI GCAGC 6 cut(s) 337, 541, 569, 601, 788, 835
BseYI CCCAGC 1 cut(s) 1242
BsgI GTGCAG 2 cut(s) 549, 861
BshFI GGCC 8 cut(s) 290, 417, 746, 758, 860, 1073, 1139, 1292
BsiHKAI GWGCWC 1 cut(s) 659
BslI CCNNNNNNNGG 4 cut(s) 227, 477, 1135, 1164
BsmAI GTCTC 2 cut(s) 234, 306
BsmI GAATGC 1 cut(s) 824
BsnI GGCC 8 cut(s) 290, 417, 746, 758, 860, 1073, 1139, 1292
Bsp1286I GDGCHC 2 cut(s) 659, 1281
Bsp1407I TGTACA 1 cut(s) 690
Bsp143I GATC 6 cut(s) 88, 170, 391, 450, 985, 1171
Bsp1720I GCTNAGC 1 cut(s) 921
BspACI CCGC 2 cut(s) 474, 477
BspANI GGCC 8 cut(s) 290, 417, 746, 758, 860, 1073, 1139, 1292
BspCNI CTCAG 4 cut(s) 162, 761, 913, 1455
BspHI TCATGA 3 cut(s) 304, 447, 1273
BspLI GGNNCC 1 cut(s) 1465
BspMAI CTGCAG 2 cut(s) 327, 559
BspMI ACCTGC 1 cut(s) 959
BspPI GGATC 2 cut(s) 96, 445
BspQI GCTCTTC 1 cut(s) 910
BsrDI GCAATG 3 cut(s) 522, 1206, 1392
BsrGI TGTACA 1 cut(s) 690
BsrI ACTGG 5 cut(s) 104, 418, 882, 1268, 1465
BssECI CCNNGG 4 cut(s) 21, 843, 1081, 1140
BssMI GATC 6 cut(s) 88, 170, 391, 450, 985, 1171
BssNAI GTATAC 1 cut(s) 1200
BssSI CACGAG 1 cut(s) 1286
BssT1I CCWWGG 2 cut(s) 21, 1081
Bst1107I GTATAC 1 cut(s) 1200
Bst2BI CACGAG 1 cut(s) 1286
Bst4CI ACNGT 2 cut(s) 18, 374
Bst6I CTCTTC 2 cut(s) 46, 910
BstAPI GCANNNNNTGC 2 cut(s) 258, 563
BstAUI TGTACA 1 cut(s) 690
BstBAI YACGTR 1 cut(s) 94
BstC8I GCNNGC 3 cut(s) 472, 774, 1413
BstDEI CTNAG 5 cut(s) 149, 351, 748, 921, 1442
BstDSI CCRYGG 1 cut(s) 843
BstF5I GGATG 2 cut(s) 328, 1174
BstHHI GCGC 2 cut(s) 842, 912
BstKTI GATC 6 cut(s) 91, 173, 394, 453, 988, 1174
BstMAI GTCTC 2 cut(s) 234, 306
BstMBI GATC 6 cut(s) 88, 170, 391, 450, 985, 1171
BstMWI GCNNNNNNNGC 7 cut(s) 258, 554, 563, 821, 848, 857, 1026
BstSFI CTRYAG 2 cut(s) 323, 555
BstV1I GCAGC 6 cut(s) 337, 541, 569, 601, 788, 835
BstXI CCANNNNNNTGG 1 cut(s) 1460
BstZ17I GTATAC 1 cut(s) 1200
BsuI GTATCC 1 cut(s) 1315
BsuRI GGCC 8 cut(s) 290, 417, 746, 758, 860, 1073, 1139, 1292
BtgI CCRYGG 1 cut(s) 843
BtsCI GGATG 2 cut(s) 328, 1174
BtsI GCAGTG 3 cut(s) 561, 822, 906
BtsIMutI CAGTG 6 cut(s) 179, 387, 411, 561, 822, 906
BveI ACCTGC 1 cut(s) 959
Cac8I GCNNGC 3 cut(s) 472, 774, 1413
CaiI CAGNNNCTG 1 cut(s) 563
CciI TCATGA 3 cut(s) 304, 447, 1273
CfoI GCGC 2 cut(s) 842, 912
Cfr13I GGNCC 2 cut(s) 7, 1464
Csp6I GTAC 4 cut(s) 28, 153, 344, 691
CspCI CAANNNNNGTGG 2 cut(s) 789, 824
CviAII CATG 7 cut(s) 305, 448, 593, 679, 1100, 1135, 1274
CviQI GTAC 4 cut(s) 28, 153, 344, 691
DdeI CTNAG 5 cut(s) 149, 351, 748, 921, 1442
DpnI GATC 6 cut(s) 90, 172, 393, 452, 987, 1173
DpnII GATC 6 cut(s) 88, 170, 391, 450, 985, 1171
DraIII CACNNNGTG 1 cut(s) 901
EaeI YGGCCR 3 cut(s) 756, 1071, 1137
Eam1104I CTCTTC 2 cut(s) 46, 910
EarI CTCTTC 2 cut(s) 46, 910
Eco130I CCWWGG 2 cut(s) 21, 1081
Eco147I AGGCCT 2 cut(s) 746, 1292
Eco24I GRGCYC 1 cut(s) 1281
Eco47I GGWCC 2 cut(s) 7, 1464
Eco57I CTGAAG 1 cut(s) 1392
EcoO109I RGGNCCY 1 cut(s) 1464
EcoT14I CCWWGG 2 cut(s) 21, 1081
EcoT38I GRGCYC 1 cut(s) 1281
ErhI CCWWGG 2 cut(s) 21, 1081
FaeI CATG 7 cut(s) 308, 451, 596, 682, 1103, 1138, 1277
FatI CATG 7 cut(s) 304, 447, 592, 678, 1099, 1134, 1273
FauI CCCGC 1 cut(s) 470
FauNDI CATATG 1 cut(s) 507
FbaI TGATCA 2 cut(s) 985, 1171
FblI GTMKAC 1 cut(s) 1199
Fnu4HI GCNGC 7 cut(s) 326, 475, 555, 558, 615, 777, 849
FokI GGATG 2 cut(s) 315, 1181
FriOI GRGCYC 1 cut(s) 1281
Fsp4HI GCNGC 7 cut(s) 326, 475, 555, 558, 615, 777, 849
FspBI CTAG 6 cut(s) 159, 224, 419, 1367, 1434, 1468
GlaI GCGC 2 cut(s) 841, 911
GluI GCNGC 7 cut(s) 326, 475, 555, 558, 615, 777, 849
GsaI CCCAGC 1 cut(s) 1246
GsuI CTGGAG 2 cut(s) 87, 1239
HaeIII GGCC 8 cut(s) 290, 417, 746, 758, 860, 1073, 1139, 1292
HhaI GCGC 2 cut(s) 842, 912
Hin1II CATG 7 cut(s) 308, 451, 596, 682, 1103, 1138, 1277
Hin6I GCGC 2 cut(s) 840, 910
HinP1I GCGC 2 cut(s) 840, 910
HindIII AAGCTT 4 cut(s) 353, 546, 1018, 1353
HinfI GANTC 3 cut(s) 208, 234, 571
HphI GGTGA 3 cut(s) 135, 1036, 1073
Hpy166II GTNNAC 1 cut(s) 1200
Hpy188I TCNGA 6 cut(s) 199, 239, 316, 585, 993, 1445
Hpy8I GTNNAC 1 cut(s) 1200
Hpy99I CGWCG 1 cut(s) 269
HpyAV CCTTC 5 cut(s) 263, 416, 422, 708, 850
HpyCH4III ACNGT 2 cut(s) 18, 374
HpyCH4IV ACGT 1 cut(s) 93
HpyCH4V TGCA 9 cut(s) 252, 261, 325, 557, 566, 617, 878, 974, 1393
HpyF10VI GCNNNNNNNGC 7 cut(s) 258, 554, 563, 821, 848, 857, 1026
HpyF3I CTNAG 5 cut(s) 149, 351, 748, 921, 1442
HpySE526I ACGT 1 cut(s) 93
Hsp92II CATG 7 cut(s) 308, 451, 596, 682, 1103, 1138, 1277
HspAI GCGC 2 cut(s) 840, 910
Ksp22I TGATCA 2 cut(s) 985, 1171
Kzo9I GATC 6 cut(s) 88, 170, 391, 450, 985, 1171
LguI GCTCTTC 1 cut(s) 910
LmnI GCTCC 3 cut(s) 272, 434, 1083
Lsp1109I GCAGC 6 cut(s) 337, 541, 569, 601, 788, 835
LweI GCATC 4 cut(s) 261, 337, 601, 1219
MaeI CTAG 6 cut(s) 159, 224, 419, 1367, 1434, 1468
MaeII ACGT 1 cut(s) 93
MaeIII GTNAC 3 cut(s) 457, 1061, 1283
MalI GATC 6 cut(s) 90, 172, 393, 452, 987, 1173
MboI GATC 6 cut(s) 88, 170, 391, 450, 985, 1171
MboII GAAGA 4 cut(s) 33, 927, 1385, 1388
MhlI GDGCHC 2 cut(s) 659, 1281
MlsI TGGCCA 2 cut(s) 758, 1073
MluCI AATT 7 cut(s) 396, 535, 904, 928, 940, 952, 1052
MluNI TGGCCA 2 cut(s) 758, 1073
MlyI GAGTC 2 cut(s) 202, 580
Mox20I TGGCCA 2 cut(s) 758, 1073
MscI TGGCCA 2 cut(s) 758, 1073
MseI TTAA 3 cut(s) 543, 765, 1448
Msp20I TGGCCA 2 cut(s) 758, 1073
MspA1I CMGCKG 1 cut(s) 752
Mva1269I GAATGC 1 cut(s) 824
MwoI GCNNNNNNNGC 7 cut(s) 258, 554, 563, 821, 848, 857, 1026
NdeI CATATG 1 cut(s) 507
NdeII GATC 6 cut(s) 88, 170, 391, 450, 985, 1171
NlaIII CATG 7 cut(s) 308, 451, 596, 682, 1103, 1138, 1277
NlaIV GGNNCC 1 cut(s) 1465
NmeAIII GCCGAG 1 cut(s) 1165
NmuCI GTSAC 3 cut(s) 457, 1061, 1283
PagI TCATGA 3 cut(s) 304, 447, 1273
PaqCI CACCTGC 1 cut(s) 959
PceI AGGCCT 2 cut(s) 746, 1292
PciSI GCTCTTC 1 cut(s) 910
PcsI WCGNNNNNNNCGW 1 cut(s) 261
PctI GAATGC 1 cut(s) 824
PfeI GAWTC 1 cut(s) 234
PflMI CCANNNNNTGG 2 cut(s) 227, 1135
PkrI GCNGC 7 cut(s) 327, 476, 556, 559, 616, 778, 850
PleI GAGTC 2 cut(s) 202, 579
PpsI GAGTC 2 cut(s) 202, 579
Ppu21I YACGTR 1 cut(s) 94
PpuMI RGGWCCY 1 cut(s) 1464
Psp5II RGGWCCY 1 cut(s) 1464
PspFI CCCAGC 1 cut(s) 1242
PspN4I GGNNCC 1 cut(s) 1465
PspPI GGNCC 2 cut(s) 7, 1464
PspPPI RGGWCCY 1 cut(s) 1464
PstI CTGCAG 2 cut(s) 327, 559
PstNI CAGNNNCTG 1 cut(s) 563
PvuII CAGCTG 1 cut(s) 752
RsaI GTAC 4 cut(s) 29, 154, 345, 692
RsaNI GTAC 4 cut(s) 28, 153, 344, 691
SapI GCTCTTC 1 cut(s) 910
SaqAI TTAA 3 cut(s) 543, 765, 1448
SatI GCNGC 7 cut(s) 326, 475, 555, 558, 615, 777, 849
Sau3AI GATC 6 cut(s) 88, 170, 391, 450, 985, 1171
Sau96I GGNCC 2 cut(s) 7, 1464
ScaI AGTACT 2 cut(s) 154, 345
SchI GAGTC 2 cut(s) 202, 580
SduI GDGCHC 2 cut(s) 659, 1281
SfaNI GCATC 4 cut(s) 261, 337, 601, 1219
SfcI CTRYAG 2 cut(s) 323, 555
SinI GGWCC 2 cut(s) 7, 1464
Sse9I AATT 7 cut(s) 396, 535, 904, 928, 940, 952, 1052
SseBI AGGCCT 2 cut(s) 746, 1292
SsiI CCGC 2 cut(s) 474, 477
SspMI CTAG 6 cut(s) 159, 224, 419, 1367, 1434, 1468
StuI AGGCCT 2 cut(s) 746, 1292
StyI CCWWGG 2 cut(s) 21, 1081
TaaI ACNGT 2 cut(s) 18, 374
TaiI ACGT 1 cut(s) 96
TaqI TCGA 2 cut(s) 255, 1049
TaqII GACCGA 1 cut(s) 1288
TasI AATT 7 cut(s) 396, 535, 904, 928, 940, 952, 1052
TatI WGTACW 4 cut(s) 27, 152, 343, 690
TauI GCSGC 1 cut(s) 477
TfiI GAWTC 1 cut(s) 234
Tru1I TTAA 3 cut(s) 543, 765, 1448
Tru9I TTAA 3 cut(s) 543, 765, 1448
TscAI CASTG 6 cut(s) 186, 394, 418, 568, 822, 906
TseFI GTSAC 3 cut(s) 457, 1061, 1283
TseI GCWGC 6 cut(s) 325, 554, 557, 614, 776, 848
Tsp45I GTSAC 3 cut(s) 457, 1061, 1283
TspDTI ATGAA 5 cut(s) 581, 657, 817, 1199, 1262
TspRI CASTG 6 cut(s) 186, 394, 418, 568, 822, 906
Van91I CCANNNNNTGG 2 cut(s) 227, 1135
VpaK11BI GGWCC 2 cut(s) 7, 1464
XapI RAATTY 4 cut(s) 904, 928, 952, 1052
XcmI CCANNNNNNNNNTGG 1 cut(s) 1088
XmiI GTMKAC 1 cut(s) 1199
XspI CTAG 6 cut(s) 159, 224, 419, 1367, 1434, 1468
ZrmI AGTACT 2 cut(s) 154, 345
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.