RLG00000010998

Encoded by

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr3
OG0005901
Physical Location & Seq
Reverse (-)
5890538 .. 5891575
1038 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000010998

Sequence Viewer

Length: 930 bp
ATGTACCTATATCCTCTTCTAAAGCAATCCCTTTCAGAAACCTTGACTAGCTTCTACACACTTGCTGGAAGAATTAGAGACAATCTCTCTATCAATTGCAATGACAAGGGAGCTAGTTACACAGAGGCAGAAATTGAGTCCATAAATCTCTCTGAGTTCCTCACCCATCTTGATGTCACATTGCTCGGTCAGTTCCTTCCATCCGGTGCTAGTTTCACTGAATCAGCAAGTCCAGGAGCTCACCTAGCTATGATCCAAGTCACCAACTTTGCATGTGGTGGTTTTGCTTTTGGTGTCTTGGTTTCACATATGGTTGTTGATGGAACTGCATTGAGCACTTTTCTTAAAGCTTGGGCGGCAAGGTTTCGTAAGGCTCCTGAATCTGATATATGTAAGCCTAGTTTTGAAGCCTCATCTGTGTTTCCTCAAAGTGATGCATTCCCAAGAGAAGCAACTATTATGGCTTTGTGGATTCCCTTTCTGAGAATGGGAAAGTGTGCTTCAAGGAGATTTATGTTTGATGCCACAGCTATTGCCACACTCAAGGCCAAAGCAACAGCCAGTAGTGCCTCAAGCTCAAGCGTGCAAAATCCAACTCGTGTAGAGGTTGTTACAGCACTCATCTGGAAATGCATTATGGCTGCGTCTGCTTTCAACACCAAAAATACGGATGGTGGGCAGAGGCAGAAGAGCAGCAACGCTCAAGAGTTAGAACTGGGAAGCTTGGTGATTCGGATGAGGGAAGCAATAAAGAAACTCGATGGCAATGTTGTCCAAAGCCTACAAGGGGATGGAGGGGTCACCAAAATGTGTGAGCTCTCAAAAGAGATGGGTGATACTTGCTCTTATGCAGCATCTGATGGTGCTTTGGATTATATATGTTTTAGACTTTTACCAGCTGGAGCAACTTTGGTCTGTACTGTTGTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Transferase

Protein Analysis

310

Amino Acids

33.23

Weight (kDa)

6.82

Isoelectric Point (pI)

38.32

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Transferase PF02458 6 - 222 4.6e-47 Transferase family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 356
AclWI GGATC 1 cut(s) 247
AfaI GTAC 2 cut(s) 5, 919
AfiI CCNNNNNNNGG 1 cut(s) 787
AgsI TTSAA 3 cut(s) 407, 504, 655
AjnI CCWGG 1 cut(s) 232
Alw21I GWGCWC 3 cut(s) 241, 338, 819
Alw26I GTCTC 1 cut(s) 72
AlwI GGATC 1 cut(s) 247
AlwNI CAGNNNCTG 1 cut(s) 857
AoxI GGCC 1 cut(s) 546
ApeKI GCWGC 3 cut(s) 641, 693, 851
AsuHPI GGTGA 6 cut(s) 154, 233, 253, 739, 793, 845
BanII GRGCYC 2 cut(s) 241, 819
BauI CACGAG 1 cut(s) 597
Bbv12I GWGCWC 3 cut(s) 241, 338, 819
BbvI GCAGC 3 cut(s) 628, 705, 863
BccI CCATC 8 cut(s) 174, 208, 314, 665, 755, 785, 823, 854
BciT130I CCWGG 1 cut(s) 234
BcoDI GTCTC 1 cut(s) 72
BfaI CTAG 5 cut(s) 48, 114, 210, 245, 399
BisI GCNGC 4 cut(s) 357, 642, 694, 852
BlsI GCNGC 4 cut(s) 358, 643, 695, 853
Bme1390I CCNGG 1 cut(s) 234
BmiI GGNNCC 1 cut(s) 375
BmrFI CCNGG 1 cut(s) 234
BmrI ACTGGG 1 cut(s) 725
BmsI GCATC 3 cut(s) 424, 511, 863
BmuI ACTGGG 1 cut(s) 725
BplI GAGNNNNNCTC 2 cut(s) 69, 101
BpmI CTGGAG 1 cut(s) 921
BpuEI CTTGAG 4 cut(s) 527, 556, 562, 687
BsaWI WCCGGW 1 cut(s) 203
Bsc4I CCNNNNNNNGG 1 cut(s) 787
Bse1I ACTGG 2 cut(s) 561, 720
Bse3DI GCAATG 3 cut(s) 106, 179, 772
BseBI CCWGG 1 cut(s) 234
BseGI GGATG 4 cut(s) 200, 676, 741, 796
BseLI CCNNNNNNNGG 1 cut(s) 787
BseMI GCAATG 3 cut(s) 106, 179, 772
BseMII CTCAG 2 cut(s) 144, 473
BseNI ACTGG 2 cut(s) 561, 720
BseXI GCAGC 3 cut(s) 628, 705, 863
BshFI GGCC 1 cut(s) 548
BsiHKAI GWGCWC 3 cut(s) 241, 338, 819
BsiSI CCGG 1 cut(s) 204
BslI CCNNNNNNNGG 1 cut(s) 787
BsmAI GTCTC 1 cut(s) 72
BsmI GAATGC 1 cut(s) 437
BsnI GGCC 1 cut(s) 548
Bsp1286I GDGCHC 3 cut(s) 241, 338, 819
Bsp143I GATC 1 cut(s) 252
BspACI CCGC 1 cut(s) 356
BspANI GGCC 1 cut(s) 548
BspCNI CTCAG 2 cut(s) 145, 474
BspLI GGNNCC 1 cut(s) 375
BspPI GGATC 1 cut(s) 247
BspQI GCTCTTC 1 cut(s) 683
BsrDI GCAATG 3 cut(s) 106, 179, 772
BsrI ACTGG 2 cut(s) 561, 720
BssMI GATC 1 cut(s) 252
BssSI CACGAG 1 cut(s) 597
Bst2BI CACGAG 1 cut(s) 597
Bst2UI CCWGG 1 cut(s) 234
Bst4CI ACNGT 1 cut(s) 922
Bst6I CTCTTC 2 cut(s) 21, 683
BstC8I GCNNGC 1 cut(s) 584
BstDEI CTNAG 2 cut(s) 153, 482
BstEII GGTNACC 1 cut(s) 799
BstF5I GGATG 4 cut(s) 200, 676, 741, 796
BstKTI GATC 1 cut(s) 255
BstMAI GTCTC 1 cut(s) 72
BstMBI GATC 1 cut(s) 252
BstMWI GCNNNNNNNGC 4 cut(s) 245, 356, 566, 647
BstNI CCWGG 1 cut(s) 234
BstNSI RCATGY 1 cut(s) 276
BstPI GGTNACC 1 cut(s) 799
BstSCI CCNGG 1 cut(s) 232
BstV1I GCAGC 3 cut(s) 628, 705, 863
BsuRI GGCC 1 cut(s) 548
BtsCI GGATG 4 cut(s) 200, 676, 741, 796
BtsIMutI CAGTG 1 cut(s) 216
Cac8I GCNNGC 1 cut(s) 584
CaiI CAGNNNCTG 1 cut(s) 857
CseI GACGC 1 cut(s) 633
Csp6I GTAC 2 cut(s) 4, 918
CspCI CAANNNNNGTGG 2 cut(s) 514, 549
CviAII CATG 1 cut(s) 273
CviQI GTAC 2 cut(s) 4, 918
DdeI CTNAG 2 cut(s) 153, 482
DpnI GATC 1 cut(s) 254
DpnII GATC 1 cut(s) 252
Eam1104I CTCTTC 2 cut(s) 21, 683
EarI CTCTTC 2 cut(s) 21, 683
Ecl136II GAGCTC 2 cut(s) 239, 817
Eco24I GRGCYC 2 cut(s) 241, 819
Eco53kI GAGCTC 2 cut(s) 239, 817
Eco91I GGTNACC 1 cut(s) 799
EcoICRI GAGCTC 2 cut(s) 239, 817
EcoO65I GGTNACC 1 cut(s) 799
EcoRII CCWGG 1 cut(s) 232
EcoT22I ATGCAT 2 cut(s) 439, 635
EcoT38I GRGCYC 2 cut(s) 241, 819
FaeI CATG 1 cut(s) 276
FatI CATG 1 cut(s) 272
FauNDI CATATG 1 cut(s) 309
Fnu4HI GCNGC 4 cut(s) 357, 642, 694, 852
FokI GGATG 4 cut(s) 187, 683, 748, 803
FriOI GRGCYC 2 cut(s) 241, 819
Fsp4HI GCNGC 4 cut(s) 357, 642, 694, 852
FspBI CTAG 5 cut(s) 48, 114, 210, 245, 399
GluI GCNGC 4 cut(s) 357, 642, 694, 852
GsuI CTGGAG 1 cut(s) 921
HaeIII GGCC 1 cut(s) 548
HapII CCGG 1 cut(s) 204
HgaI GACGC 1 cut(s) 633
Hin1II CATG 1 cut(s) 276
HindIII AAGCTT 2 cut(s) 348, 721
HinfI GANTC 5 cut(s) 137, 221, 380, 472, 730
HpaII CCGG 1 cut(s) 204
HphI GGTGA 6 cut(s) 154, 233, 253, 739, 793, 845
Hpy188I TCNGA 6 cut(s) 37, 154, 385, 483, 735, 859
Hpy188III TCNNGA 4 cut(s) 170, 377, 625, 704
HpyAV CCTTC 1 cut(s) 206
HpyCH4III ACNGT 1 cut(s) 922
HpyCH4V TGCA 7 cut(s) 99, 272, 329, 437, 586, 633, 851
HpyF10VI GCNNNNNNNGC 4 cut(s) 245, 356, 566, 647
HpyF3I CTNAG 2 cut(s) 153, 482
Hsp92II CATG 1 cut(s) 276
Kzo9I GATC 1 cut(s) 252
LguI GCTCTTC 1 cut(s) 683
LmnI GCTCC 4 cut(s) 110, 236, 379, 902
Lsp1109I GCAGC 3 cut(s) 628, 705, 863
LweI GCATC 3 cut(s) 424, 511, 863
MaeI CTAG 5 cut(s) 48, 114, 210, 245, 399
MaeIII GTNAC 5 cut(s) 116, 175, 259, 610, 799
MalI GATC 1 cut(s) 254
MboI GATC 1 cut(s) 252
MboII GAAGA 3 cut(s) 8, 81, 700
MfeI CAATTG 1 cut(s) 94
MhlI GDGCHC 3 cut(s) 241, 338, 819
MluCI AATT 3 cut(s) 72, 94, 132
MlyI GAGTC 1 cut(s) 146
MmeI TCCRAC 1 cut(s) 617
Mph1103I ATGCAT 2 cut(s) 439, 635
MseI TTAA 1 cut(s) 345
MslI CAYNNNNRTG 2 cut(s) 171, 806
MspA1I CMGCKG 1 cut(s) 899
MspI CCGG 1 cut(s) 204
MspR9I CCNGG 1 cut(s) 234
MunI CAATTG 1 cut(s) 94
Mva1269I GAATGC 1 cut(s) 437
MvaI CCWGG 1 cut(s) 234
MwoI GCNNNNNNNGC 4 cut(s) 245, 356, 566, 647
NdeI CATATG 1 cut(s) 309
NdeII GATC 1 cut(s) 252
NlaIII CATG 1 cut(s) 276
NlaIV GGNNCC 1 cut(s) 375
NmuCI GTSAC 3 cut(s) 175, 259, 799
NsiI ATGCAT 2 cut(s) 439, 635
NspI RCATGY 1 cut(s) 276
PciSI GCTCTTC 1 cut(s) 683
PctI GAATGC 1 cut(s) 437
PfeI GAWTC 4 cut(s) 221, 380, 472, 730
PfoI TCCNGGA 1 cut(s) 232
PkrI GCNGC 4 cut(s) 358, 643, 695, 853
PleI GAGTC 1 cut(s) 145
PpsI GAGTC 1 cut(s) 145
Psp124BI GAGCTC 2 cut(s) 241, 819
Psp6I CCWGG 1 cut(s) 232
PspEI GGTNACC 1 cut(s) 799
PspGI CCWGG 1 cut(s) 232
PspN4I GGNNCC 1 cut(s) 375
PstNI CAGNNNCTG 1 cut(s) 857
PvuII CAGCTG 1 cut(s) 899
RsaI GTAC 2 cut(s) 5, 919
RsaNI GTAC 2 cut(s) 4, 918
RseI CAYNNNNRTG 2 cut(s) 171, 806
SacI GAGCTC 2 cut(s) 241, 819
SapI GCTCTTC 1 cut(s) 683
SaqAI TTAA 1 cut(s) 345
SatI GCNGC 4 cut(s) 357, 642, 694, 852
Sau3AI GATC 1 cut(s) 252
SchI GAGTC 1 cut(s) 146
ScrFI CCNGG 1 cut(s) 234
SduI GDGCHC 3 cut(s) 241, 338, 819
SfaNI GCATC 3 cut(s) 424, 511, 863
SmiMI CAYNNNNRTG 2 cut(s) 171, 806
SmlI CTYRAG 4 cut(s) 542, 571, 577, 702
SmoI CTYRAG 4 cut(s) 542, 571, 577, 702
Sse9I AATT 3 cut(s) 72, 94, 132
SsiI CCGC 1 cut(s) 356
SspMI CTAG 5 cut(s) 48, 114, 210, 245, 399
SstI GAGCTC 2 cut(s) 241, 819
StyD4I CCNGG 1 cut(s) 232
TaaI ACNGT 1 cut(s) 922
TaqI TCGA 1 cut(s) 759
TaqII GACCGA 1 cut(s) 176
TasI AATT 3 cut(s) 72, 94, 132
TatI WGTACW 1 cut(s) 917
TauI GCSGC 1 cut(s) 359
TfiI GAWTC 4 cut(s) 221, 380, 472, 730
Tru1I TTAA 1 cut(s) 345
Tru9I TTAA 1 cut(s) 345
TscAI CASTG 1 cut(s) 223
TseFI GTSAC 3 cut(s) 175, 259, 799
TseI GCWGC 3 cut(s) 641, 693, 851
Tsp45I GTSAC 3 cut(s) 175, 259, 799
TspGWI ACGGA 1 cut(s) 683
TspRI CASTG 1 cut(s) 223
XceI RCATGY 1 cut(s) 276
XspI CTAG 5 cut(s) 48, 114, 210, 245, 399
Zsp2I ATGCAT 2 cut(s) 439, 635
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.