FvH4_2g37490

Encoded by

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
OG0005901
Physical Location & Seq
Reverse (-)
27298113 .. 27299274
1162 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g37490.t1

Sequence Viewer

Length: 966 bp
ATGTGGGATCTCTCCTCTCCAACAGGTGTTGCCATGAGCACCTTTCTCAAAGCTTGGGCCGCAGCCACAGCACAGAGTCAATCAGGTACTGATCAGTGTATTCATGTGTTGCCTAGTTTTGATGGTGCAACATTGTTTCCTCCAATTCTTGATGAACAAGGACAGTGTGCACACCCAACACAAGCAACTATGAGGGGATTTTACAGGCGTTTTGCCAAGAAAGGAAGGAGTGTTACAAACAGGTTTGTATTTGAGGCCTCAGCTGTGGCCAAACTTAAAGAGGTAGCAGCAACATCATCATTACAGAATCCAAGTCGGGTGGAGGCAGTTTCAGCATTCATCTTGAAATGCGCAAGAGCTGCTTGGAAGGCCAAGTCTGGTCGATCTGCACCATGTTTGATAACTCACGCAGTGAATTTGCGCCGAAGAGCTGACCCGAATCTTCCACAAAATAGTATGGGGAATTTTGTTTGTTTGACAGGTGCAATAGCAAATGAATGTCACGGAGAAGAGGAGTTAGAGTTGTCAAGCTTGGTGAGCAAGATGAGGGAAGCAACATCGAAAGTCAATGGTGACTTGGTGGTGAAGCTACAAGGTCAAGGTGGGTTAGCAACTATTAGCAAGGTTTTCCAAGACATGAATGAGGCTATTGCAATCTCCACTACTGATGGGGAGATGAACTTTATTGGGTATACCAGTATTGCCTACTCTGGAGTGTATGATGCTGATTTCGGCTGGGGAAAACCTATGTGGGTCGTTCCAGTTCATAATGCCGGTCGCGAGGCCATTTCAATCAATGAGGTTCATTTGATGGATACAGGAGAATGGGAAACAATGCATTTGAAGCTTGGATTAATCTACATGAAGAAGAAATGGAATTGTTTCAAAGCAATCAAGAATTGCTTAATTTTGCTAGTCTCAATACTAGTATCCTCAAGTAAAACCGAAATACTGGTTTCTATTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Transferase

Protein Analysis

322

Amino Acids

34.97

Weight (kDa)

8.72

Isoelectric Point (pI)

41.39

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Transferase PF02458 9 - 263 4.6e-28 Transferase family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 352
AccI GTMKAC 1 cut(s) 692
AccII CGCG 1 cut(s) 780
AciI CCGC 1 cut(s) 60
AclWI GGATC 1 cut(s) 15
AcoI YGGCCR 1 cut(s) 267
AcsI RAATTY 2 cut(s) 415, 463
AdeI CACNNNGTG 1 cut(s) 412
AfaI GTAC 1 cut(s) 88
AgsI TTSAA 4 cut(s) 346, 792, 844, 886
AhlI ACTAGT 1 cut(s) 925
AluBI AGCT 7 cut(s) 53, 263, 359, 431, 531, 589, 847
AluI AGCT 7 cut(s) 53, 263, 359, 431, 531, 589, 847
Alw21I GWGCWC 2 cut(s) 41, 172
Alw26I GTCTC 1 cut(s) 922
Alw44I GTGCAC 1 cut(s) 168
AlwI GGATC 1 cut(s) 15
AlwNI CAGNNNCTG 1 cut(s) 89
AoxI GGCC 5 cut(s) 57, 255, 267, 369, 783
ApaLI GTGCAC 1 cut(s) 168
ApeKI GCWGC 3 cut(s) 62, 287, 359
ApoI RAATTY 2 cut(s) 415, 463
AseI ATTAAT 1 cut(s) 854
Asp700I GAANNNNTTC 1 cut(s) 881
AspLEI GCGC 2 cut(s) 353, 423
AspS9I GGNCC 1 cut(s) 57
AsuHPI GGTGA 3 cut(s) 547, 584, 595
BaeGI GKGCMC 1 cut(s) 172
BalI TGGCCA 1 cut(s) 269
BarI GAAGNNNNNNTAC 2 cut(s) 217, 249
Bbv12I GWGCWC 2 cut(s) 41, 172
BbvCI CCTCAGC 1 cut(s) 259
BbvI GCAGC 3 cut(s) 74, 299, 346
BccI CCATC 3 cut(s) 116, 662, 805
BciVI GTATCC 2 cut(s) 808, 940
BclI TGATCA 1 cut(s) 91
BcoDI GTCTC 1 cut(s) 922
BcuI ACTAGT 1 cut(s) 925
BfaI CTAG 3 cut(s) 114, 914, 926
BfuI GTATCC 2 cut(s) 808, 940
BisI GCNGC 4 cut(s) 60, 63, 288, 360
BlsI GCNGC 4 cut(s) 61, 64, 289, 361
BmgT120I GGNCC 1 cut(s) 57
BmsI GCATC 1 cut(s) 712
BpmI CTGGAG 1 cut(s) 732
Bpu10I CCTNAGC 1 cut(s) 259
BpuEI CTTGAG 1 cut(s) 919
BsaXI ACNNNNNCTCC 2 cut(s) 506, 536
Bse118I RCCGGY 1 cut(s) 773
Bse1I ACTGG 3 cut(s) 696, 761, 957
BseMII CTCAG 1 cut(s) 273
BseNI ACTGG 3 cut(s) 696, 761, 957
BseRI GAGGAG 2 cut(s) 4, 527
BseSI GKGCMC 1 cut(s) 172
BseXI GCAGC 3 cut(s) 74, 299, 346
BseYI CCCAGC 1 cut(s) 735
BsgI GTGCAG 1 cut(s) 372
Bsh1236I CGCG 1 cut(s) 780
Bsh1285I CGRYCG 1 cut(s) 778
BshFI GGCC 5 cut(s) 59, 257, 269, 371, 785
BsiEI CGRYCG 1 cut(s) 778
BsiHKAI GWGCWC 2 cut(s) 41, 172
BsiSI CCGG 1 cut(s) 774
BsmAI GTCTC 1 cut(s) 922
BsmI GAATGC 1 cut(s) 335
BsnI GGCC 5 cut(s) 59, 257, 269, 371, 785
Bsp1286I GDGCHC 2 cut(s) 41, 172
Bsp143I GATC 3 cut(s) 7, 91, 383
Bsp68I TCGCGA 1 cut(s) 780
BspACI CCGC 1 cut(s) 60
BspANI GGCC 5 cut(s) 59, 257, 269, 371, 785
BspCNI CTCAG 1 cut(s) 272
BspFNI CGCG 1 cut(s) 780
BspPI GGATC 1 cut(s) 15
BspQI GCTCTTC 1 cut(s) 421
BsrFI RCCGGY 1 cut(s) 773
BsrI ACTGG 3 cut(s) 696, 761, 957
BssAI RCCGGY 1 cut(s) 773
BssMI GATC 3 cut(s) 7, 91, 383
BssNAI GTATAC 1 cut(s) 693
Bst1107I GTATAC 1 cut(s) 693
Bst4CI ACNGT 1 cut(s) 165
Bst6I CTCTTC 2 cut(s) 421, 504
BstAPI GCANNNNNTGC 1 cut(s) 359
BstDEI CTNAG 1 cut(s) 259
BstFNI CGCG 1 cut(s) 780
BstHHI GCGC 2 cut(s) 353, 423
BstKTI GATC 3 cut(s) 10, 94, 386
BstMAI GTCTC 1 cut(s) 922
BstMBI GATC 3 cut(s) 7, 91, 383
BstMCI CGRYCG 1 cut(s) 778
BstMWI GCNNNNNNNGC 7 cut(s) 59, 68, 332, 359, 368, 537, 844
BstSLI GKGCMC 1 cut(s) 172
BstUI CGCG 1 cut(s) 780
BstV1I GCAGC 3 cut(s) 74, 299, 346
BstX2I RGATCY 1 cut(s) 7
BstYI RGATCY 1 cut(s) 7
BstZ17I GTATAC 1 cut(s) 693
BsuI GTATCC 2 cut(s) 808, 940
BsuRI GGCC 5 cut(s) 59, 257, 269, 371, 785
BtsI GCAGTG 1 cut(s) 417
BtsIMutI CAGTG 3 cut(s) 101, 170, 417
BtuMI TCGCGA 1 cut(s) 780
CaiI CAGNNNCTG 1 cut(s) 89
CfoI GCGC 2 cut(s) 353, 423
Cfr10I RCCGGY 1 cut(s) 773
Cfr13I GGNCC 1 cut(s) 57
Csp6I GTAC 1 cut(s) 87
CspCI CAANNNNNGTGG 2 cut(s) 300, 335
CviAII CATG 5 cut(s) 34, 104, 393, 637, 862
CviQI GTAC 1 cut(s) 87
DdeI CTNAG 1 cut(s) 259
DpnI GATC 3 cut(s) 9, 93, 385
DpnII GATC 3 cut(s) 7, 91, 383
DraIII CACNNNGTG 1 cut(s) 412
EaeI YGGCCR 1 cut(s) 267
Eam1104I CTCTTC 2 cut(s) 421, 504
EarI CTCTTC 2 cut(s) 421, 504
Eco147I AGGCCT 1 cut(s) 257
EcoT22I ATGCAT 1 cut(s) 840
FaeI CATG 5 cut(s) 37, 107, 396, 640, 865
FalI AAGNNNNNCTT 4 cut(s) 346, 378, 887, 919
FatI CATG 5 cut(s) 33, 103, 392, 636, 861
FbaI TGATCA 1 cut(s) 91
FblI GTMKAC 1 cut(s) 692
Fnu4HI GCNGC 4 cut(s) 60, 63, 288, 360
Fsp4HI GCNGC 4 cut(s) 60, 63, 288, 360
FspBI CTAG 3 cut(s) 114, 914, 926
FspI TGCGCA 1 cut(s) 352
GlaI GCGC 2 cut(s) 352, 422
GluI GCNGC 4 cut(s) 60, 63, 288, 360
GsaI CCCAGC 1 cut(s) 739
GsuI CTGGAG 1 cut(s) 732
HaeIII GGCC 5 cut(s) 59, 257, 269, 371, 785
HapII CCGG 1 cut(s) 774
HhaI GCGC 2 cut(s) 353, 423
Hin1II CATG 5 cut(s) 37, 107, 396, 640, 865
Hin6I GCGC 2 cut(s) 351, 421
HinP1I GCGC 2 cut(s) 351, 421
HindIII AAGCTT 3 cut(s) 51, 529, 845
HinfI GANTC 3 cut(s) 76, 307, 439
HpaII CCGG 1 cut(s) 774
HphI GGTGA 3 cut(s) 547, 584, 595
Hpy166II GTNNAC 2 cut(s) 170, 693
Hpy188III TCNNGA 5 cut(s) 149, 343, 711, 779, 895
Hpy8I GTNNAC 2 cut(s) 170, 693
HpyAV CCTTC 2 cut(s) 219, 361
HpyCH4III ACNGT 1 cut(s) 165
HpyCH4V TGCA 6 cut(s) 128, 170, 389, 485, 653, 838
HpyF10VI GCNNNNNNNGC 7 cut(s) 59, 68, 332, 359, 368, 537, 844
HpyF3I CTNAG 1 cut(s) 259
Hsp92II CATG 5 cut(s) 37, 107, 396, 640, 865
HspAI GCGC 2 cut(s) 351, 421
Ksp22I TGATCA 1 cut(s) 91
Kzo9I GATC 3 cut(s) 7, 91, 383
LguI GCTCTTC 1 cut(s) 421
Lsp1109I GCAGC 3 cut(s) 74, 299, 346
LweI GCATC 1 cut(s) 712
MaeI CTAG 3 cut(s) 114, 914, 926
MaeIII GTNAC 3 cut(s) 232, 500, 572
MalI GATC 3 cut(s) 9, 93, 385
MboI GATC 3 cut(s) 7, 91, 383
MboII GAAGA 5 cut(s) 434, 438, 521, 877, 880
MflI RGATCY 1 cut(s) 7
MhlI GDGCHC 2 cut(s) 41, 172
MlsI TGGCCA 1 cut(s) 269
MluCI AATT 6 cut(s) 144, 415, 463, 877, 898, 906
MluNI TGGCCA 1 cut(s) 269
MlyI GAGTC 1 cut(s) 85
MmeI TCCRAC 1 cut(s) 44
Mox20I TGGCCA 1 cut(s) 269
Mph1103I ATGCAT 1 cut(s) 840
MroXI GAANNNNTTC 1 cut(s) 881
MscI TGGCCA 1 cut(s) 269
MseI TTAA 3 cut(s) 276, 854, 905
Msp20I TGGCCA 1 cut(s) 269
MspA1I CMGCKG 1 cut(s) 263
MspI CCGG 1 cut(s) 774
Mva1269I GAATGC 1 cut(s) 335
MvnI CGCG 1 cut(s) 780
MwoI GCNNNNNNNGC 7 cut(s) 59, 68, 332, 359, 368, 537, 844
NdeII GATC 3 cut(s) 7, 91, 383
NlaIII CATG 5 cut(s) 37, 107, 396, 640, 865
NmuCI GTSAC 2 cut(s) 500, 572
NruI TCGCGA 1 cut(s) 780
NsbI TGCGCA 1 cut(s) 352
NsiI ATGCAT 1 cut(s) 840
PceI AGGCCT 1 cut(s) 257
PciSI GCTCTTC 1 cut(s) 421
PctI GAATGC 1 cut(s) 335
PdmI GAANNNNTTC 1 cut(s) 881
PfeI GAWTC 2 cut(s) 307, 439
PkrI GCNGC 4 cut(s) 61, 64, 289, 361
PleI GAGTC 1 cut(s) 84
PpsI GAGTC 1 cut(s) 84
PshBI ATTAAT 1 cut(s) 854
PspFI CCCAGC 1 cut(s) 735
PspPI GGNCC 1 cut(s) 57
PstNI CAGNNNCTG 1 cut(s) 89
PsuI RGATCY 1 cut(s) 7
PvuII CAGCTG 1 cut(s) 263
RruI TCGCGA 1 cut(s) 780
RsaI GTAC 1 cut(s) 88
RsaNI GTAC 1 cut(s) 87
SapI GCTCTTC 1 cut(s) 421
SaqAI TTAA 3 cut(s) 276, 854, 905
SatI GCNGC 4 cut(s) 60, 63, 288, 360
Sau3AI GATC 3 cut(s) 7, 91, 383
Sau96I GGNCC 1 cut(s) 57
SchI GAGTC 1 cut(s) 85
SduI GDGCHC 2 cut(s) 41, 172
SfaNI GCATC 1 cut(s) 712
SmlI CTYRAG 1 cut(s) 934
SmoI CTYRAG 1 cut(s) 934
SpeI ACTAGT 1 cut(s) 925
Sse9I AATT 6 cut(s) 144, 415, 463, 877, 898, 906
SseBI AGGCCT 1 cut(s) 257
SsiI CCGC 1 cut(s) 60
SspMI CTAG 3 cut(s) 114, 914, 926
StuI AGGCCT 1 cut(s) 257
TaaI ACNGT 1 cut(s) 165
TaqI TCGA 2 cut(s) 382, 560
TasI AATT 6 cut(s) 144, 415, 463, 877, 898, 906
TauI GCSGC 1 cut(s) 62
TfiI GAWTC 2 cut(s) 307, 439
Tru1I TTAA 3 cut(s) 276, 854, 905
Tru9I TTAA 3 cut(s) 276, 854, 905
TscAI CASTG 3 cut(s) 101, 170, 417
TseFI GTSAC 2 cut(s) 500, 572
TseI GCWGC 3 cut(s) 62, 287, 359
Tsp45I GTSAC 2 cut(s) 500, 572
TspDTI ATGAA 9 cut(s) 92, 168, 328, 510, 653, 692, 755, 794, 878
TspGWI ACGGA 1 cut(s) 519
TspRI CASTG 3 cut(s) 101, 170, 417
VneI GTGCAC 1 cut(s) 168
VspI ATTAAT 1 cut(s) 854
XapI RAATTY 2 cut(s) 415, 463
XmiI GTMKAC 1 cut(s) 692
XmnI GAANNNNTTC 1 cut(s) 881
XspI CTAG 3 cut(s) 114, 914, 926
Zsp2I ATGCAT 1 cut(s) 840
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.