Rroxscaffold_7G00163920

Encoded by

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
OG0005901
Physical Location & Seq
Reverse (-)
6049484 .. 6052049
2566 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_7G00163920.1

Sequence Viewer

Length: 1527 bp
ATGGCTATATTAGAACATGATGACAGCTTACTTGCTTTTGCTTGTATCGATCCTACTGTCAACATTGAGCTGATCAGAATGACGAACATGGTCGTAAAAATCATCTCAAAAGAGTGCATCAAACCCTCTTCCCCAACACCTCAGCACCTGAAAACCCACAAGCTCTCCCTCTTGGACCAGTTCATTCCTTCCATTTATGTACCTATGATCCTCTTCTATCCCATCCACCCAAACCCAACAGCTTCTGCTAATTCTGCTAATACTTCCCAAAGGTCACAACAGCTAAAGCAATCCCTTTCAGAAACCTTGACTAGCTTCTACACACTTGCTGGAAGAATTAGAGACAATCTCTCTATCGATTGCAATGACGAGGGAGCTAGTTACACAGAGGCAGAAATTGAGTCCATAAATCTCTCCGAGTTCCTCACCCATCCTGATGTCACATTGCTCGGCCAGTTCCTTCCTTCCGGTGCTAGTTTCACTGAATCAGCAGGTCCAGGAGCTCACCTAGCTATGATCCAAGTCACCAACTTTGCATGCGGTGGTTTTGCTGTTGGTGTCTTGGTTTCACATATGGTTGTTGATGGAACTGCGTTGAGCACTTTTCTTAAAGCTTGGGCTGCAAGGTTTCGTAAGGCTCCTGAATCTGATATATGTAAGCCTAGTTTTGTTGCCTCATCTGTGTTTCCTCAAAGTGATGCATTCCCAAGAGAAGCAACTATTATGGCTTTGTGGATCCCCTTTCTGAGAATGGGAAAGTGTGCTTCAAGGAGATTTTTGTTTGATGCCACAGCTATTGCCGCACTCAAGGCCAAAGCAACAGCCAGTAGTGCCTCAAGCTCAAGCGTGCAAAATCCAACTCGTGTAGAGGTTGTTACAGCACTCATCTGGAAATGCATTATGGCTGCGTCTGCTTTCAACACCGAAAATACTGATGGTGGGCAGAGGCAGAAGAGGTCAAGTTTGATAACTCACGCAGTCAATTTGCGTCGAAGAGCTGTGCCACCCTTTTCAGAAAACTGTATGGGAAATTTTCTCTTCACAGCTGCAGCTACTTCATGCAGCAGCAACGCTCAAGAGTTAGAACTGGGAAGCTTGGTGATTCGGATGAGGGAAGCAATAAAGAAACTCGATGGCAATGTTGTCCAAAGCCTACAAGGGGATGGAGGGGTCGCCAAAATGTGTGAGCTTTCAAAAGAGATGGGTGATACTTGCTCTCATGCAGCATCTGATGGTGCTTTGGATTATATATGTTTTACCAGCTGGTGCAACTTTGGTCTGTACGACGTTGATTTCGGGTGGGGAAAGCCTATATGGATGTCTTGTGTTGGTGCAGACAATGCTCCACAATCCGTGTTCATGAATTCAGTCCTTTTAACAGATACGAGGTCTCGTGATGGAGTTGAGGCCTGGATTTATCTAGGTGAACAAGAGATGGCTATATTAGAACATGATGACAGCTTTCTTGCTTTTGCTTCTATTGATCATAGTCCTCTTGAACTTGGTAACACTGTTTCTCATCCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Transferase

Protein Analysis

508

Amino Acids

55.14

Weight (kDa)

5.49

Isoelectric Point (pI)

45.79

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Transferase PF02458 31 - 488 3.2e-84 Transferase family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 482
AciI CCGC 2 cut(s) 540, 801
AclWI GGATC 5 cut(s) 44, 202, 511, 730, 743
AcoI YGGCCR 1 cut(s) 451
AcsI RAATTY 2 cut(s) 1030, 1363
AfaI GTAC 2 cut(s) 201, 1283
AfiI CCNNNNNNNGG 1 cut(s) 1159
AgsI TTSAA 4 cut(s) 768, 919, 1194, 1499
AjnI CCWGG 2 cut(s) 496, 1409
Alw21I GWGCWC 2 cut(s) 505, 602
Alw26I GTCTC 2 cut(s) 336, 1395
AlwI GGATC 5 cut(s) 44, 202, 511, 730, 743
AlwNI CAGNNNCTG 3 cut(s) 148, 245, 1229
AoxI GGCC 3 cut(s) 451, 810, 1407
ApeKI GCWGC 7 cut(s) 620, 905, 1046, 1049, 1062, 1065, 1223
ApoI RAATTY 2 cut(s) 1030, 1363
ArsI GACNNNNNNTTYG 2 cut(s) 1277, 1309
AspS9I GGNCC 2 cut(s) 175, 494
AsuHPI GGTGA 6 cut(s) 418, 497, 517, 1111, 1217, 1436
AvaII GGWCC 2 cut(s) 175, 494
BamHI GGATCC 1 cut(s) 735
BanII GRGCYC 1 cut(s) 505
BauI CACGAG 2 cut(s) 861, 1392
Bbv12I GWGCWC 2 cut(s) 505, 602
BbvCI CCTCAGC 1 cut(s) 141
BbvI GCAGC 7 cut(s) 607, 892, 1033, 1061, 1074, 1077, 1235
BciT130I CCWGG 2 cut(s) 498, 1411
BclI TGATCA 2 cut(s) 72, 1483
BcoDI GTCTC 2 cut(s) 336, 1395
BfaI CTAG 6 cut(s) 312, 378, 474, 509, 663, 1421
BfmI CTRYAG 1 cut(s) 1047
BfuAI ACCTGC 1 cut(s) 482
BisI GCNGC 8 cut(s) 621, 801, 906, 1047, 1050, 1063, 1066, 1224
BlsI GCNGC 8 cut(s) 622, 802, 907, 1048, 1051, 1064, 1067, 1225
Bme1390I CCNGG 2 cut(s) 498, 1411
Bme18I GGWCC 2 cut(s) 175, 494
BmgT120I GGNCC 2 cut(s) 175, 494
BmiI GGNNCC 2 cut(s) 639, 737
BmrFI CCNGG 2 cut(s) 498, 1411
BmrI ACTGGG 1 cut(s) 1097
BmsI GCATC 4 cut(s) 126, 688, 775, 1235
BmuI ACTGGG 1 cut(s) 1097
BplI GAGNNNNNCTC 2 cut(s) 333, 365
Bpu10I CCTNAGC 1 cut(s) 141
BpuEI CTTGAG 4 cut(s) 791, 820, 826, 1059
Bsa29I ATCGAT 2 cut(s) 48, 357
BsaI GGTCTC 1 cut(s) 1395
BsaWI WCCGGW 1 cut(s) 467
BsaXI ACNNNNNCTCC 2 cut(s) 149, 179
Bsc4I CCNNNNNNNGG 1 cut(s) 1159
Bse1I ACTGG 4 cut(s) 178, 454, 825, 1092
Bse3DI GCAATG 3 cut(s) 370, 443, 1144
BseBI CCWGG 2 cut(s) 498, 1411
BseCI ATCGAT 2 cut(s) 48, 357
BseGI GGATG 6 cut(s) 222, 430, 1113, 1168, 1323, 1519
BseLI CCNNNNNNNGG 1 cut(s) 1159
BseMI GCAATG 3 cut(s) 370, 443, 1144
BseMII CTCAG 2 cut(s) 155, 737
BseNI ACTGG 4 cut(s) 178, 454, 825, 1092
BseXI GCAGC 7 cut(s) 607, 892, 1033, 1061, 1074, 1077, 1235
BsgI GTGCAG 1 cut(s) 1353
BshFI GGCC 3 cut(s) 453, 812, 1409
BshVI ATCGAT 2 cut(s) 48, 357
BsiHKAI GWGCWC 2 cut(s) 505, 602
BsiSI CCGG 1 cut(s) 468
BslI CCNNNNNNNGG 1 cut(s) 1159
BsmAI GTCTC 2 cut(s) 336, 1395
BsmI GAATGC 1 cut(s) 701
BsnI GGCC 3 cut(s) 453, 812, 1409
Bso31I GGTCTC 1 cut(s) 1395
Bsp1286I GDGCHC 2 cut(s) 505, 602
Bsp143I GATC 6 cut(s) 49, 72, 207, 516, 735, 1483
BspACI CCGC 2 cut(s) 540, 801
BspANI GGCC 3 cut(s) 453, 812, 1409
BspCNI CTCAG 2 cut(s) 154, 738
BspDI ATCGAT 2 cut(s) 48, 357
BspHI TCATGA 1 cut(s) 1359
BspLI GGNNCC 2 cut(s) 639, 737
BspMAI CTGCAG 1 cut(s) 1051
BspMI ACCTGC 1 cut(s) 482
BspPI GGATC 5 cut(s) 44, 202, 511, 730, 743
BspQI GCTCTTC 1 cut(s) 988
BspTNI GGTCTC 1 cut(s) 1395
BsrDI GCAATG 3 cut(s) 370, 443, 1144
BsrI ACTGG 4 cut(s) 178, 454, 825, 1092
BssMI GATC 6 cut(s) 49, 72, 207, 516, 735, 1483
BssSI CACGAG 2 cut(s) 861, 1392
Bst2BI CACGAG 2 cut(s) 861, 1392
Bst2UI CCWGG 2 cut(s) 498, 1411
Bst4CI ACNGT 3 cut(s) 58, 1022, 1513
Bst6I CTCTTC 5 cut(s) 133, 218, 947, 988, 1043
BstAPI GCANNNNNTGC 1 cut(s) 1340
BstC8I GCNNGC 2 cut(s) 538, 848
BstDEI CTNAG 2 cut(s) 141, 746
BstF5I GGATG 6 cut(s) 222, 430, 1113, 1168, 1323, 1519
BstKTI GATC 6 cut(s) 52, 75, 210, 519, 738, 1486
BstMAI GTCTC 2 cut(s) 336, 1395
BstMBI GATC 6 cut(s) 49, 72, 207, 516, 735, 1483
BstMWI GCNNNNNNNGC 8 cut(s) 254, 509, 620, 800, 809, 830, 911, 1340
BstNI CCWGG 2 cut(s) 498, 1411
BstNSI RCATGY 1 cut(s) 540
BstSCI CCNGG 2 cut(s) 496, 1409
BstSFI CTRYAG 1 cut(s) 1047
BstV1I GCAGC 7 cut(s) 607, 892, 1033, 1061, 1074, 1077, 1235
BstX2I RGATCY 1 cut(s) 735
BstYI RGATCY 1 cut(s) 735
Bsu15I ATCGAT 2 cut(s) 48, 357
BsuRI GGCC 3 cut(s) 453, 812, 1409
BsuTUI ATCGAT 2 cut(s) 48, 357
BtsCI GGATG 6 cut(s) 222, 430, 1113, 1168, 1323, 1519
BtsIMutI CAGTG 2 cut(s) 480, 1509
BveI ACCTGC 1 cut(s) 482
Cac8I GCNNGC 2 cut(s) 538, 848
CaiI CAGNNNCTG 3 cut(s) 148, 245, 1229
CciI TCATGA 1 cut(s) 1359
Cfr13I GGNCC 2 cut(s) 175, 494
ClaI ATCGAT 2 cut(s) 48, 357
CseI GACGC 2 cut(s) 897, 977
Csp6I GTAC 2 cut(s) 200, 1282
CspCI CAANNNNNGTGG 2 cut(s) 778, 813
CviAII CATG 8 cut(s) 17, 88, 537, 1059, 1220, 1360, 1451, 1524
CviQI GTAC 2 cut(s) 200, 1282
DdeI CTNAG 2 cut(s) 141, 746
DpnI GATC 6 cut(s) 51, 74, 209, 518, 737, 1485
DpnII GATC 6 cut(s) 49, 72, 207, 516, 735, 1483
EaeI YGGCCR 1 cut(s) 451
Eam1104I CTCTTC 5 cut(s) 133, 218, 947, 988, 1043
EarI CTCTTC 5 cut(s) 133, 218, 947, 988, 1043
Ecl136II GAGCTC 1 cut(s) 503
Eco147I AGGCCT 1 cut(s) 1409
Eco24I GRGCYC 1 cut(s) 505
Eco31I GGTCTC 1 cut(s) 1395
Eco47I GGWCC 2 cut(s) 175, 494
Eco53kI GAGCTC 1 cut(s) 503
EcoICRI GAGCTC 1 cut(s) 503
EcoRI GAATTC 1 cut(s) 1363
EcoRII CCWGG 2 cut(s) 496, 1409
EcoT22I ATGCAT 2 cut(s) 703, 899
EcoT38I GRGCYC 1 cut(s) 505
FaeI CATG 8 cut(s) 20, 91, 540, 1062, 1223, 1363, 1454, 1527
FatI CATG 8 cut(s) 16, 87, 536, 1058, 1219, 1359, 1450, 1523
FauNDI CATATG 1 cut(s) 573
FbaI TGATCA 2 cut(s) 72, 1483
Fnu4HI GCNGC 8 cut(s) 621, 801, 906, 1047, 1050, 1063, 1066, 1224
FokI GGATG 6 cut(s) 209, 417, 1120, 1175, 1330, 1506
FriOI GRGCYC 1 cut(s) 505
Fsp4HI GCNGC 8 cut(s) 621, 801, 906, 1047, 1050, 1063, 1066, 1224
FspBI CTAG 6 cut(s) 312, 378, 474, 509, 663, 1421
GluI GCNGC 8 cut(s) 621, 801, 906, 1047, 1050, 1063, 1066, 1224
HaeIII GGCC 3 cut(s) 453, 812, 1409
HapII CCGG 1 cut(s) 468
HgaI GACGC 2 cut(s) 897, 977
Hin1II CATG 8 cut(s) 20, 91, 540, 1062, 1223, 1363, 1454, 1527
HincII GTYRAC 1 cut(s) 61
HindII GTYRAC 1 cut(s) 61
HindIII AAGCTT 2 cut(s) 612, 1093
HinfI GANTC 4 cut(s) 401, 485, 644, 1102
HpaII CCGG 1 cut(s) 468
HphI GGTGA 6 cut(s) 418, 497, 517, 1111, 1217, 1436
Hpy166II GTNNAC 2 cut(s) 61, 1427
Hpy188I TCNGA 8 cut(s) 77, 301, 418, 649, 747, 1015, 1107, 1231
Hpy188III TCNNGA 7 cut(s) 434, 641, 889, 1076, 1360, 1394, 1496
Hpy8I GTNNAC 2 cut(s) 61, 1427
Hpy99I CGWCG 2 cut(s) 993, 1289
HpyAV CCTTC 3 cut(s) 198, 470, 474
HpyCH4III ACNGT 3 cut(s) 58, 1022, 1513
HpyCH4IV ACGT 1 cut(s) 1287
HpyF10VI GCNNNNNNNGC 8 cut(s) 254, 509, 620, 800, 809, 830, 911, 1340
HpyF3I CTNAG 2 cut(s) 141, 746
HpySE526I ACGT 1 cut(s) 1287
Hsp92II CATG 8 cut(s) 20, 91, 540, 1062, 1223, 1363, 1454, 1527
Ksp22I TGATCA 2 cut(s) 72, 1483
Kzo9I GATC 6 cut(s) 49, 72, 207, 516, 735, 1483
LguI GCTCTTC 1 cut(s) 988
LmnI GCTCC 4 cut(s) 374, 500, 643, 1348
Lsp1109I GCAGC 7 cut(s) 607, 892, 1033, 1061, 1074, 1077, 1235
LweI GCATC 4 cut(s) 126, 688, 775, 1235
MaeI CTAG 6 cut(s) 312, 378, 474, 509, 663, 1421
MaeII ACGT 1 cut(s) 1287
MaeIII GTNAC 6 cut(s) 273, 380, 439, 523, 874, 1505
MalI GATC 6 cut(s) 51, 74, 209, 518, 737, 1485
MboI GATC 6 cut(s) 49, 72, 207, 516, 735, 1483
MboII GAAGA 6 cut(s) 120, 205, 345, 964, 1005, 1030
MflI RGATCY 1 cut(s) 735
MhlI GDGCHC 2 cut(s) 505, 602
MluCI AATT 6 cut(s) 250, 336, 396, 982, 1030, 1363
MlyI GAGTC 1 cut(s) 410
MmeI TCCRAC 1 cut(s) 881
Mph1103I ATGCAT 2 cut(s) 703, 899
MseI TTAA 2 cut(s) 609, 1376
MslI CAYNNNNRTG 1 cut(s) 435
MspA1I CMGCKG 2 cut(s) 1046, 1263
MspI CCGG 1 cut(s) 468
MspR9I CCNGG 2 cut(s) 498, 1411
Mva1269I GAATGC 1 cut(s) 701
MvaI CCWGG 2 cut(s) 498, 1411
MwoI GCNNNNNNNGC 8 cut(s) 254, 509, 620, 800, 809, 830, 911, 1340
NdeI CATATG 1 cut(s) 573
NdeII GATC 6 cut(s) 49, 72, 207, 516, 735, 1483
NlaIII CATG 8 cut(s) 20, 91, 540, 1062, 1223, 1363, 1454, 1527
NlaIV GGNNCC 2 cut(s) 639, 737
NmeAIII GCCGAG 1 cut(s) 429
NmuCI GTSAC 3 cut(s) 273, 439, 523
NsiI ATGCAT 2 cut(s) 703, 899
NspI RCATGY 1 cut(s) 540
PaeI GCATGC 1 cut(s) 540
PagI TCATGA 1 cut(s) 1359
PceI AGGCCT 1 cut(s) 1409
PciSI GCTCTTC 1 cut(s) 988
PctI GAATGC 1 cut(s) 701
PfeI GAWTC 3 cut(s) 485, 644, 1102
PfoI TCCNGGA 1 cut(s) 496
PkrI GCNGC 8 cut(s) 622, 802, 907, 1048, 1051, 1064, 1067, 1225
PleI GAGTC 1 cut(s) 409
PpsI GAGTC 1 cut(s) 409
Psp124BI GAGCTC 1 cut(s) 505
Psp6I CCWGG 2 cut(s) 496, 1409
PspGI CCWGG 2 cut(s) 496, 1409
PspN4I GGNNCC 2 cut(s) 639, 737
PspPI GGNCC 2 cut(s) 175, 494
PstI CTGCAG 1 cut(s) 1051
PstNI CAGNNNCTG 3 cut(s) 148, 245, 1229
PsuI RGATCY 1 cut(s) 735
PvuII CAGCTG 2 cut(s) 1046, 1263
RsaI GTAC 2 cut(s) 201, 1283
RsaNI GTAC 2 cut(s) 200, 1282
RseI CAYNNNNRTG 1 cut(s) 435
SacI GAGCTC 1 cut(s) 505
SapI GCTCTTC 1 cut(s) 988
SaqAI TTAA 2 cut(s) 609, 1376
SatI GCNGC 8 cut(s) 621, 801, 906, 1047, 1050, 1063, 1066, 1224
Sau3AI GATC 6 cut(s) 49, 72, 207, 516, 735, 1483
Sau96I GGNCC 2 cut(s) 175, 494
SchI GAGTC 1 cut(s) 410
ScrFI CCNGG 2 cut(s) 498, 1411
SduI GDGCHC 2 cut(s) 505, 602
SfaNI GCATC 4 cut(s) 126, 688, 775, 1235
SfcI CTRYAG 1 cut(s) 1047
SinI GGWCC 2 cut(s) 175, 494
SmiMI CAYNNNNRTG 1 cut(s) 435
SmlI CTYRAG 4 cut(s) 806, 835, 841, 1074
SmoI CTYRAG 4 cut(s) 806, 835, 841, 1074
SphI GCATGC 1 cut(s) 540
Sse9I AATT 6 cut(s) 250, 336, 396, 982, 1030, 1363
SseBI AGGCCT 1 cut(s) 1409
SsiI CCGC 2 cut(s) 540, 801
SspMI CTAG 6 cut(s) 312, 378, 474, 509, 663, 1421
SstI GAGCTC 1 cut(s) 505
StuI AGGCCT 1 cut(s) 1409
StyD4I CCNGG 2 cut(s) 496, 1409
TaaI ACNGT 3 cut(s) 58, 1022, 1513
TaiI ACGT 1 cut(s) 1290
TaqI TCGA 4 cut(s) 48, 357, 991, 1131
TasI AATT 6 cut(s) 250, 336, 396, 982, 1030, 1363
TauI GCSGC 1 cut(s) 803
TfiI GAWTC 3 cut(s) 485, 644, 1102
Tru1I TTAA 2 cut(s) 609, 1376
Tru9I TTAA 2 cut(s) 609, 1376
TscAI CASTG 2 cut(s) 487, 1516
TseFI GTSAC 3 cut(s) 273, 439, 523
TseI GCWGC 7 cut(s) 620, 905, 1046, 1049, 1062, 1065, 1223
Tsp45I GTSAC 3 cut(s) 273, 439, 523
TspDTI ATGAA 4 cut(s) 172, 1047, 1348, 1376
TspGWI ACGGA 1 cut(s) 1342
TspRI CASTG 2 cut(s) 487, 1516
VpaK11BI GGWCC 2 cut(s) 175, 494
XapI RAATTY 2 cut(s) 1030, 1363
XceI RCATGY 1 cut(s) 540
XspI CTAG 6 cut(s) 312, 378, 474, 509, 663, 1421
Zsp2I ATGCAT 2 cut(s) 703, 899
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.