Rw6G038400

Encoded by

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr6
OG0005901
Physical Location & Seq
Forward (+)
62530041 .. 62531625
1585 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw6G038400.1

Sequence Viewer

Length: 1428 bp
ATGGAGGTCCAAATACTGTCCAAGGAGTACATCAAGCCCTCTTCCCCAACGCCTCCACACATTAACACATACAGATTTTCCCTCTTGGATCACGTAATGCCTCCAGTTTATGTTCCCATGGTCATGTTCTATCCTCCTATCACAAGCACTAAACAATCTCTCTCGGAAACCCTGACTCGCTTTTACCCACTAGCTGGAAGAATCAGAGACTACCTTTGCATCCATTGCAACGACGAAGGAGCTTGTTACATAGAGGCCGATGTCAAGTCTCATGGCCTCTCGGAGTTTCTGCAGCATCCTGACTTGTCAGTACTCCCTAAGCTTCTTCCAACTTTCAACAGTTTGCTTGATTACACTGATCTAATTTCAAATGCCACCACTGGCCTAGAAGGAGAAGGAGGAGCTGATGTAGTCATGATCCAAGTGACTAACTTTGCCTGCGGCGGGTTTGTGATTGGAGTGTTTGTTTCTCATATGATTGTTGATGGCATTGCCATCAGCAATTTTCTTAAAGCTTGGGCTGCAGCCACTGCACACAGTCTATCAGGTCAGAGTGTTCATGAATTGCCTGATTTTGATGCTGCAACATTGTTCCCTCCTATTCTTGATGAACAAGGTAAGAGAACACACCCAAGTGAAGCAACCATGAGGGGATTGTACAGGCGTTTCGCCAAGAGAGGAAGGTGTGTTACGAACAGATTTGTATTTGAGGCCTCAGCTGTGGCCAAACTTAAAGATCAAGCAGCAACATCATCATTACAAAATCCAAGTCGGGTGGAGGCAGTGTCAGCATTCATCTGGAAATGCGCCACGGCTGCTTGGAAGGCCAAGTCTGGTCAATCTGCACCAAGTTTGATAACCCACGCAGTGAATTTGCGCCGAAGAGCTGAGCCGAATTTTTCCCAAAATTGTATGGGGAATTTTGTTTGTTTGGCAGGTGCAATAGCAAATGGTCATCAGAGAGAACAGGAGTTAGAGTTGTCAAGCTTGGTGAGCAAGATGAGGGAAGCAACATCGAAATTCAATGGTGACTTGGTGGCGAAGCTACAAGGTCAAGATGGGTTAGCCACTATTAGTAAGGTTTTCCAAGACATGGCCGAGGCTATCACACTCTCCACTAATGGGGATGATCAGGTGGAGATGAACTTTATTGGGTATACCAGCATTGCCTACTCTGGAGTGTATGATGCCGATTTCGGCTGGGGAAAGCCTCTGTGGGTCGTTCCAGTTCATGAGCCCTGTCACGAGGCCTTCTCGGTCAATGTGGTTCGTTTGATGGATACAGGAGAATGGGGAAACAATGGTTTTGAAGCTTGGATTTCTCTAGCTGAAGAAGAAATGGCCATGTTGCAAATCAATCAGGACTTGCTTGCTTTTGCTTCTCTCAATCCTAGTCCTCTCAGGTGGAGCCAAAACACTGGGTCCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Transferase

Protein Analysis

475

Amino Acids

52.19

Weight (kDa)

5.56

Isoelectric Point (pI)

37.74

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Transferase PF02458 1 - 455 2.1e-73 Transferase family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 926
Acc36I ACCTGC 1 cut(s) 926
AccB7I CCANNNNNTGG 2 cut(s) 194, 1093
AccI GTMKAC 1 cut(s) 1157
AciI CCGC 2 cut(s) 441, 444
AclWI GGATC 2 cut(s) 96, 412
AcoI YGGCCR 3 cut(s) 723, 1095, 1341
AcsI RAATTY 4 cut(s) 871, 895, 919, 1019
AcuI CTGAAG 1 cut(s) 1350
AdeI CACNNNGTG 1 cut(s) 868
AfaI GTAC 3 cut(s) 29, 312, 659
AfiI CCNNNNNNNGG 4 cut(s) 194, 444, 1093, 1122
AgsI TTSAA 4 cut(s) 337, 369, 1024, 1310
AleI CACNNNNGTG 1 cut(s) 633
Alw26I GTCTC 2 cut(s) 201, 273
AlwI GGATC 2 cut(s) 96, 412
AlwNI CAGNNNCTG 1 cut(s) 530
AoxI GGCC 9 cut(s) 255, 274, 382, 711, 723, 825, 1095, 1248, 1341
ApeKI GCWGC 6 cut(s) 292, 521, 524, 581, 743, 815
ApoI RAATTY 4 cut(s) 871, 895, 919, 1019
ArsI GACNNNNNNTTYG 2 cut(s) 754, 786
AspLEI GCGC 2 cut(s) 809, 879
AspS9I GGNCC 2 cut(s) 7, 1422
AsuHPI GGTGA 2 cut(s) 1003, 1040
AvaII GGWCC 2 cut(s) 7, 1422
BalI TGGCCA 2 cut(s) 725, 1343
BanII GRGCYC 1 cut(s) 1239
BarI GAAGNNNNNNTAC 2 cut(s) 673, 705
BauI CACGAG 1 cut(s) 1244
BbvCI CCTCAGC 1 cut(s) 715
BbvI GCAGC 6 cut(s) 304, 508, 536, 568, 755, 802
BccI CCATC 4 cut(s) 479, 503, 1052, 1270
BceAI ACGGC 1 cut(s) 828
BciVI GTATCC 1 cut(s) 1273
BclI TGATCA 1 cut(s) 1129
BcoDI GTCTC 2 cut(s) 201, 273
BfaI CTAG 4 cut(s) 191, 386, 1325, 1392
BfmI CTRYAG 2 cut(s) 290, 522
BfuAI ACCTGC 1 cut(s) 926
BfuI GTATCC 1 cut(s) 1273
BisI GCNGC 7 cut(s) 293, 442, 522, 525, 582, 744, 816
BlpI GCTNAGC 1 cut(s) 888
BlsI GCNGC 7 cut(s) 294, 443, 523, 526, 583, 745, 817
BmcAI AGTACT 1 cut(s) 312
Bme18I GGWCC 2 cut(s) 7, 1422
BmgT120I GGNCC 2 cut(s) 7, 1422
BmiI GGNNCC 2 cut(s) 1409, 1423
BmrI ACTGGG 1 cut(s) 1428
BmsI GCATC 4 cut(s) 228, 304, 568, 1177
BmuI ACTGGG 1 cut(s) 1428
BplI GAGNNNNNCTC 2 cut(s) 1238, 1270
BpmI CTGGAG 2 cut(s) 87, 1197
Bpu10I CCTNAGC 2 cut(s) 318, 715
Bpu1102I GCTNAGC 1 cut(s) 888
BsaAI YACGTR 1 cut(s) 94
BsaJI CCNNGG 4 cut(s) 21, 117, 810, 1098
BsaXI ACNNNNNCTCC 8 cut(s) 393, 423, 450, 480, 770, 800, 962, 992
Bsc4I CCNNNNNNNGG 4 cut(s) 194, 444, 1093, 1122
Bse1I ACTGG 4 cut(s) 104, 385, 1226, 1423
Bse3DI GCAATG 3 cut(s) 223, 489, 1164
BseDI CCNNGG 4 cut(s) 21, 117, 810, 1098
BseGI GGATG 3 cut(s) 219, 295, 1132
BseLI CCNNNNNNNGG 4 cut(s) 194, 444, 1093, 1122
BseMI GCAATG 3 cut(s) 223, 489, 1164
BseMII CTCAG 3 cut(s) 729, 879, 1414
BseNI ACTGG 4 cut(s) 104, 385, 1226, 1423
BseRI GAGGAG 1 cut(s) 414
BseXI GCAGC 6 cut(s) 304, 508, 536, 568, 755, 802
BseYI CCCAGC 1 cut(s) 1200
BsgI GTGCAG 2 cut(s) 516, 828
BshFI GGCC 9 cut(s) 257, 276, 384, 713, 725, 827, 1097, 1250, 1343
BslI CCNNNNNNNGG 4 cut(s) 194, 444, 1093, 1122
BsmAI GTCTC 2 cut(s) 201, 273
BsmI GAATGC 1 cut(s) 791
BsnI GGCC 9 cut(s) 257, 276, 384, 713, 725, 827, 1097, 1250, 1343
Bsp1286I GDGCHC 1 cut(s) 1239
Bsp1407I TGTACA 1 cut(s) 657
Bsp143I GATC 5 cut(s) 88, 358, 417, 736, 1129
Bsp1720I GCTNAGC 1 cut(s) 888
Bsp19I CCATGG 1 cut(s) 117
BspACI CCGC 2 cut(s) 441, 444
BspANI GGCC 9 cut(s) 257, 276, 384, 713, 725, 827, 1097, 1250, 1343
BspCNI CTCAG 3 cut(s) 728, 880, 1413
BspHI TCATGA 3 cut(s) 414, 559, 1231
BspLI GGNNCC 2 cut(s) 1409, 1423
BspMAI CTGCAG 2 cut(s) 294, 526
BspMI ACCTGC 1 cut(s) 926
BspPI GGATC 2 cut(s) 96, 412
BspQI GCTCTTC 1 cut(s) 877
BsrDI GCAATG 3 cut(s) 223, 489, 1164
BsrGI TGTACA 1 cut(s) 657
BsrI ACTGG 4 cut(s) 104, 385, 1226, 1423
BssECI CCNNGG 4 cut(s) 21, 117, 810, 1098
BssMI GATC 5 cut(s) 88, 358, 417, 736, 1129
BssNAI GTATAC 1 cut(s) 1158
BssSI CACGAG 1 cut(s) 1244
BssT1I CCWWGG 2 cut(s) 21, 117
Bst1107I GTATAC 1 cut(s) 1158
Bst2BI CACGAG 1 cut(s) 1244
Bst4CI ACNGT 3 cut(s) 18, 341, 539
Bst6I CTCTTC 2 cut(s) 46, 877
BstAPI GCANNNNNTGC 2 cut(s) 225, 530
BstAUI TGTACA 1 cut(s) 657
BstBAI YACGTR 1 cut(s) 94
BstC8I GCNNGC 2 cut(s) 439, 1371
BstDEI CTNAG 4 cut(s) 318, 715, 888, 1400
BstDSI CCRYGG 2 cut(s) 117, 810
BstF5I GGATG 3 cut(s) 219, 295, 1132
BstHHI GCGC 2 cut(s) 809, 879
BstKTI GATC 5 cut(s) 91, 361, 420, 739, 1132
BstMAI GTCTC 2 cut(s) 201, 273
BstMBI GATC 5 cut(s) 88, 358, 417, 736, 1129
BstMWI GCNNNNNNNGC 7 cut(s) 225, 521, 530, 788, 815, 824, 993
BstSFI CTRYAG 2 cut(s) 290, 522
BstV1I GCAGC 6 cut(s) 304, 508, 536, 568, 755, 802
BstXI CCANNNNNNTGG 1 cut(s) 1418
BstZ17I GTATAC 1 cut(s) 1158
BsuI GTATCC 1 cut(s) 1273
BsuRI GGCC 9 cut(s) 257, 276, 384, 713, 725, 827, 1097, 1250, 1343
BtgI CCRYGG 2 cut(s) 117, 810
BtsCI GGATG 3 cut(s) 219, 295, 1132
BtsI GCAGTG 3 cut(s) 528, 789, 873
BtsIMutI CAGTG 6 cut(s) 354, 378, 528, 789, 873, 1416
BveI ACCTGC 1 cut(s) 926
Cac8I GCNNGC 2 cut(s) 439, 1371
CaiI CAGNNNCTG 1 cut(s) 530
CciI TCATGA 3 cut(s) 414, 559, 1231
CfoI GCGC 2 cut(s) 809, 879
Cfr13I GGNCC 2 cut(s) 7, 1422
Csp6I GTAC 3 cut(s) 28, 311, 658
CspCI CAANNNNNGTGG 2 cut(s) 756, 791
CviAII CATG 9 cut(s) 118, 124, 272, 415, 560, 646, 1093, 1232, 1345
CviQI GTAC 3 cut(s) 28, 311, 658
DdeI CTNAG 4 cut(s) 318, 715, 888, 1400
DpnI GATC 5 cut(s) 90, 360, 419, 738, 1131
DpnII GATC 5 cut(s) 88, 358, 417, 736, 1129
DraIII CACNNNGTG 1 cut(s) 868
EaeI YGGCCR 3 cut(s) 723, 1095, 1341
Eam1104I CTCTTC 2 cut(s) 46, 877
EarI CTCTTC 2 cut(s) 46, 877
Eco130I CCWWGG 2 cut(s) 21, 117
Eco147I AGGCCT 2 cut(s) 713, 1250
Eco24I GRGCYC 1 cut(s) 1239
Eco47I GGWCC 2 cut(s) 7, 1422
Eco57I CTGAAG 1 cut(s) 1350
EcoO109I RGGNCCY 1 cut(s) 1422
EcoT14I CCWWGG 2 cut(s) 21, 117
EcoT38I GRGCYC 1 cut(s) 1239
ErhI CCWWGG 2 cut(s) 21, 117
FaeI CATG 9 cut(s) 121, 127, 275, 418, 563, 649, 1096, 1235, 1348
FatI CATG 9 cut(s) 117, 123, 271, 414, 559, 645, 1092, 1231, 1344
FauI CCCGC 1 cut(s) 437
FauNDI CATATG 1 cut(s) 474
FbaI TGATCA 1 cut(s) 1129
FblI GTMKAC 1 cut(s) 1157
Fnu4HI GCNGC 7 cut(s) 293, 442, 522, 525, 582, 744, 816
FokI GGATG 3 cut(s) 206, 282, 1139
FriOI GRGCYC 1 cut(s) 1239
Fsp4HI GCNGC 7 cut(s) 293, 442, 522, 525, 582, 744, 816
FspBI CTAG 4 cut(s) 191, 386, 1325, 1392
GlaI GCGC 2 cut(s) 808, 878
GluI GCNGC 7 cut(s) 293, 442, 522, 525, 582, 744, 816
GsaI CCCAGC 1 cut(s) 1204
GsuI CTGGAG 2 cut(s) 87, 1197
HaeIII GGCC 9 cut(s) 257, 276, 384, 713, 725, 827, 1097, 1250, 1343
HhaI GCGC 2 cut(s) 809, 879
Hin1II CATG 9 cut(s) 121, 127, 275, 418, 563, 649, 1096, 1235, 1348
Hin6I GCGC 2 cut(s) 807, 877
HinP1I GCGC 2 cut(s) 807, 877
HindIII AAGCTT 4 cut(s) 320, 513, 985, 1311
HinfI GANTC 2 cut(s) 175, 201
HphI GGTGA 2 cut(s) 1003, 1040
Hpy166II GTNNAC 1 cut(s) 1158
Hpy188I TCNGA 5 cut(s) 166, 206, 283, 552, 960
Hpy8I GTNNAC 1 cut(s) 1158
Hpy99I CGWCG 1 cut(s) 236
HpyAV CCTTC 6 cut(s) 230, 383, 389, 675, 817, 1261
HpyCH4III ACNGT 3 cut(s) 18, 341, 539
HpyCH4IV ACGT 1 cut(s) 93
HpyCH4V TGCA 9 cut(s) 219, 228, 292, 524, 533, 584, 845, 941, 1351
HpyF10VI GCNNNNNNNGC 7 cut(s) 225, 521, 530, 788, 815, 824, 993
HpyF3I CTNAG 4 cut(s) 318, 715, 888, 1400
HpySE526I ACGT 1 cut(s) 93
Hsp92II CATG 9 cut(s) 121, 127, 275, 418, 563, 649, 1096, 1235, 1348
HspAI GCGC 2 cut(s) 807, 877
Ksp22I TGATCA 1 cut(s) 1129
Kzo9I GATC 5 cut(s) 88, 358, 417, 736, 1129
LguI GCTCTTC 1 cut(s) 877
LmnI GCTCC 3 cut(s) 239, 401, 1407
Lsp1109I GCAGC 6 cut(s) 304, 508, 536, 568, 755, 802
LweI GCATC 4 cut(s) 228, 304, 568, 1177
MaeI CTAG 4 cut(s) 191, 386, 1325, 1392
MaeII ACGT 1 cut(s) 93
MaeIII GTNAC 5 cut(s) 245, 424, 688, 1028, 1241
MalI GATC 5 cut(s) 90, 360, 419, 738, 1131
MboI GATC 5 cut(s) 88, 358, 417, 736, 1129
MboII GAAGA 6 cut(s) 33, 210, 317, 894, 1343, 1346
MhlI GDGCHC 1 cut(s) 1239
MlsI TGGCCA 2 cut(s) 725, 1343
MluCI AATT 8 cut(s) 363, 502, 563, 871, 895, 907, 919, 1019
MluNI TGGCCA 2 cut(s) 725, 1343
MlyI GAGTC 1 cut(s) 169
MmeI TCCRAC 1 cut(s) 353
Mox20I TGGCCA 2 cut(s) 725, 1343
MscI TGGCCA 2 cut(s) 725, 1343
MseI TTAA 3 cut(s) 63, 510, 732
MslI CAYNNNNRTG 2 cut(s) 122, 633
Msp20I TGGCCA 2 cut(s) 725, 1343
MspA1I CMGCKG 1 cut(s) 719
Mva1269I GAATGC 1 cut(s) 791
MwoI GCNNNNNNNGC 7 cut(s) 225, 521, 530, 788, 815, 824, 993
NcoI CCATGG 1 cut(s) 117
NdeI CATATG 1 cut(s) 474
NdeII GATC 5 cut(s) 88, 358, 417, 736, 1129
NlaIII CATG 9 cut(s) 121, 127, 275, 418, 563, 649, 1096, 1235, 1348
NlaIV GGNNCC 2 cut(s) 1409, 1423
NmeAIII GCCGAG 1 cut(s) 1123
NmuCI GTSAC 3 cut(s) 424, 1028, 1241
OliI CACNNNNGTG 1 cut(s) 633
PagI TCATGA 3 cut(s) 414, 559, 1231
PaqCI CACCTGC 1 cut(s) 926
PceI AGGCCT 2 cut(s) 713, 1250
PciSI GCTCTTC 1 cut(s) 877
PctI GAATGC 1 cut(s) 791
PfeI GAWTC 1 cut(s) 201
PflMI CCANNNNNTGG 2 cut(s) 194, 1093
PkrI GCNGC 7 cut(s) 294, 443, 523, 526, 583, 745, 817
PleI GAGTC 1 cut(s) 169
PpsI GAGTC 1 cut(s) 169
Ppu21I YACGTR 1 cut(s) 94
PpuMI RGGWCCY 1 cut(s) 1422
Psp5II RGGWCCY 1 cut(s) 1422
PspFI CCCAGC 1 cut(s) 1200
PspN4I GGNNCC 2 cut(s) 1409, 1423
PspPI GGNCC 2 cut(s) 7, 1422
PspPPI RGGWCCY 1 cut(s) 1422
PstI CTGCAG 2 cut(s) 294, 526
PstNI CAGNNNCTG 1 cut(s) 530
PvuII CAGCTG 1 cut(s) 719
RsaI GTAC 3 cut(s) 29, 312, 659
RsaNI GTAC 3 cut(s) 28, 311, 658
RseI CAYNNNNRTG 2 cut(s) 122, 633
SapI GCTCTTC 1 cut(s) 877
SaqAI TTAA 3 cut(s) 63, 510, 732
SatI GCNGC 7 cut(s) 293, 442, 522, 525, 582, 744, 816
Sau3AI GATC 5 cut(s) 88, 358, 417, 736, 1129
Sau96I GGNCC 2 cut(s) 7, 1422
ScaI AGTACT 1 cut(s) 312
SchI GAGTC 1 cut(s) 169
SduI GDGCHC 1 cut(s) 1239
SfaNI GCATC 4 cut(s) 228, 304, 568, 1177
SfcI CTRYAG 2 cut(s) 290, 522
SinI GGWCC 2 cut(s) 7, 1422
SmiMI CAYNNNNRTG 2 cut(s) 122, 633
Sse9I AATT 8 cut(s) 363, 502, 563, 871, 895, 907, 919, 1019
SseBI AGGCCT 2 cut(s) 713, 1250
SsiI CCGC 2 cut(s) 441, 444
SspMI CTAG 4 cut(s) 191, 386, 1325, 1392
StuI AGGCCT 2 cut(s) 713, 1250
StyI CCWWGG 2 cut(s) 21, 117
TaaI ACNGT 3 cut(s) 18, 341, 539
TaiI ACGT 1 cut(s) 96
TaqI TCGA 1 cut(s) 1016
TaqII GACCGA 1 cut(s) 1246
TasI AATT 8 cut(s) 363, 502, 563, 871, 895, 907, 919, 1019
TatI WGTACW 3 cut(s) 27, 310, 657
TauI GCSGC 1 cut(s) 444
TfiI GAWTC 1 cut(s) 201
Tru1I TTAA 3 cut(s) 63, 510, 732
Tru9I TTAA 3 cut(s) 63, 510, 732
TscAI CASTG 6 cut(s) 361, 385, 535, 789, 873, 1423
TseFI GTSAC 3 cut(s) 424, 1028, 1241
TseI GCWGC 6 cut(s) 292, 521, 524, 581, 743, 815
Tsp45I GTSAC 3 cut(s) 424, 1028, 1241
TspDTI ATGAA 6 cut(s) 548, 576, 624, 784, 1157, 1220
TspRI CASTG 6 cut(s) 361, 385, 535, 789, 873, 1423
Van91I CCANNNNNTGG 2 cut(s) 194, 1093
VpaK11BI GGWCC 2 cut(s) 7, 1422
XapI RAATTY 4 cut(s) 871, 895, 919, 1019
XmiI GTMKAC 1 cut(s) 1157
XspI CTAG 4 cut(s) 191, 386, 1325, 1392
ZrmI AGTACT 1 cut(s) 312
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.