FvH4_2g37500

Encoded by

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
OG0005901
Physical Location & Seq
Reverse (-)
27306258 .. 27307700
1443 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g37500.t1

Sequence Viewer

Length: 1443 bp
ATGGAGGTCCAAATAATTTCCCAGGAGTACATCAAGCCCTCTTCCCCAACACCTCCACACTTGAACACTTACAAATTTTCTCTCTTGGATCACTTAATGCCTCCAGTTTATGTTCCCATGATCTTGTTCTATCCTCCTGTTTCACCTCCCATTTCTACTAGCAGTGAAAGATCACAAGCTCTCAAACAATCTCTCTCGGAAACCCTGACTCGCTTTTACCCGCTTGCAGGAAGAATCAGAAGCAATCTTTGCATAGATTGCAACGATGAAGGAGCTTATTACATAGAGGCTAAGGTTGAGTCTCATGACCTCTCGGAGTTTCTGCAGCATCCGGATTTGTCACTATTCCCTAAGCTCGTTCCACCTTTCAACAGTTTGCTAGATTACACTGATCAACTTACGAATCCCACCACCACCCCAGGAGGAGGACCTGATGTAGTCATGGTACAAGTGACCAACTTCGCCTGCGGCGGCTTTGTGATTGGAGTGTATGTTTCTCACATGATTGTTGATGGTGTTGCCATTAGCACTTTTCTCCAGGCTTGGGCTGCAGCCACAGCACAGAATCAATCAGGTGATCAGTGTATTCATGTGTTGCCTAGTTTTGATGGTGCAACATTGTTCCCTCCGATTCATGATGAACAAGGAAAGTTTGCACACCCAACAGAAGCAACTATGAGGGGCTTGTACAGGCGTTTTGCCAAGAAAGGAAGGTGTGTTAATAAGAGATTTGTATTTGAGGCCTCAGCTGTGGCCAAACTTAAAGAGCTAGCAGCAACATCATCATTACAGAATCCAAGTCGGGTGGAGGCAGTTTCGGCATTCATCTGGAAATGCGCCAGAGCTGCTTGGAAGGCCAAGTCTGGTCGATCTGCACCAAGTTTGATAACACACGCAGTGAATTTGCGCCGAAGAGCTGACCCGAATCTTCCACAAAATAGTATGGGGAATTTTGTTTGTTTGACAGGTGCAATAGCAAATGAATGTCACGGAGAAGAGGAGTTAGAGTTGTCAAGCTTGGTGAGCAAGATGAGGGAAGCGACATCGAAAGTCAATGGTGACTTGGTGGCGAAGCTACAAGATCAGGGCAGGTTGGAGACTTTGAGTAAGGTTTTCCAAGACATGGCTGATGCTATTGCACTCTCCACTACTAATGGGGATGATAAGGTGGAGATGAACTTTATTGGGTATACAAGCATTGCCTACTCTGGAGTGTATGATGCCGATTTCGGCTGGGGAAAGCCTCTGTGGGTCGCTCCAGTTCATGAGCCCTGCCACGAGGCCTTTTCGGTCAATGTGGTTCGTTTGATGGATACAGGAGAATGGGGAAACAATGGATTTGAAGCTTGGATTTCTCTAGCTGAGGAAGAAATGATATTATTGCAAAGCAATCAGGACTTGCTTGCTTTTGCTTCTCTTAATCCTAGTATTCTCCTCAGGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Transferase

Protein Analysis

481

Amino Acids

52.81

Weight (kDa)

5.51

Isoelectric Point (pI)

44.86

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Transferase PF02458 1 - 466 1.2e-83 Transferase family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 1080
AccB7I CCANNNNNTGG 1 cut(s) 1123
AccI GTMKAC 1 cut(s) 1190
AccIII TCCGGA 1 cut(s) 331
AciI CCGC 3 cut(s) 221, 468, 471
AclWI GGATC 1 cut(s) 96
AcoI YGGCCR 1 cut(s) 753
AcsI RAATTY 3 cut(s) 74, 901, 949
AdeI CACNNNGTG 1 cut(s) 898
AfaI GTAC 3 cut(s) 29, 447, 689
AfiI CCNNNNNNNGG 4 cut(s) 227, 425, 544, 1123
AgsI TTSAA 3 cut(s) 64, 370, 1343
AjnI CCWGG 3 cut(s) 21, 418, 537
Alw26I GTCTC 2 cut(s) 306, 1091
AlwI GGATC 1 cut(s) 96
Aor13HI TCCGGA 1 cut(s) 331
AoxI GGCC 4 cut(s) 741, 753, 855, 1281
ApeKI GCWGC 5 cut(s) 325, 548, 551, 773, 845
ApoI RAATTY 3 cut(s) 74, 901, 949
AspLEI GCGC 2 cut(s) 839, 909
AspS9I GGNCC 2 cut(s) 7, 428
AsuHPI GGTGA 4 cut(s) 135, 587, 1033, 1070
AsuNHI GCTAGC 1 cut(s) 769
AvaII GGWCC 2 cut(s) 7, 428
AxyI CCTNAGG 1 cut(s) 1436
BalI TGGCCA 1 cut(s) 755
BanII GRGCYC 1 cut(s) 1272
BauI CACGAG 1 cut(s) 1277
BbvCI CCTCAGC 2 cut(s) 745, 1362
BbvI GCAGC 5 cut(s) 337, 535, 563, 785, 832
BccI CCATC 3 cut(s) 506, 602, 1303
BciT130I CCWGG 3 cut(s) 23, 420, 539
BciVI GTATCC 1 cut(s) 1306
BclI TGATCA 2 cut(s) 391, 577
BcoDI GTCTC 2 cut(s) 306, 1091
BfaI CTAG 6 cut(s) 159, 380, 600, 770, 1358, 1425
BfmI CTRYAG 2 cut(s) 323, 549
BfuAI ACCTGC 1 cut(s) 1080
BfuI GTATCC 1 cut(s) 1306
BisI GCNGC 7 cut(s) 326, 469, 472, 549, 552, 774, 846
BlsI GCNGC 7 cut(s) 327, 470, 473, 550, 553, 775, 847
Bme1390I CCNGG 3 cut(s) 23, 420, 539
Bme18I GGWCC 2 cut(s) 7, 428
BmgT120I GGNCC 2 cut(s) 7, 428
BmrFI CCNGG 3 cut(s) 23, 420, 539
BmsI GCATC 3 cut(s) 337, 1120, 1210
BmtI GCTAGC 1 cut(s) 773
BpmI CTGGAG 4 cut(s) 87, 521, 1230, 1242
Bpu10I CCTNAGC 4 cut(s) 291, 351, 745, 1362
BsaJI CCNNGG 2 cut(s) 21, 418
BsaWI WCCGGW 1 cut(s) 331
BsaXI ACNNNNNCTCC 4 cut(s) 477, 507, 992, 1022
Bsc4I CCNNNNNNNGG 4 cut(s) 227, 425, 544, 1123
Bse1I ACTGG 2 cut(s) 104, 1259
Bse21I CCTNAGG 1 cut(s) 1436
Bse3DI GCAATG 1 cut(s) 1197
BseAI TCCGGA 1 cut(s) 331
BseBI CCWGG 3 cut(s) 23, 420, 539
BseDI CCNNGG 2 cut(s) 21, 418
BseGI GGATG 2 cut(s) 328, 1165
BseLI CCNNNNNNNGG 4 cut(s) 227, 425, 544, 1123
BseMI GCAATG 1 cut(s) 1197
BseMII CTCAG 2 cut(s) 759, 1353
BseNI ACTGG 2 cut(s) 104, 1259
BseRI GAGGAG 3 cut(s) 438, 1013, 1424
BseXI GCAGC 5 cut(s) 337, 535, 563, 785, 832
BseYI CCCAGC 1 cut(s) 1233
BsgI GTGCAG 1 cut(s) 858
BshFI GGCC 4 cut(s) 743, 755, 857, 1283
BsiSI CCGG 1 cut(s) 332
BslI CCNNNNNNNGG 4 cut(s) 227, 425, 544, 1123
BsmAI GTCTC 2 cut(s) 306, 1091
BsmI GAATGC 1 cut(s) 821
BsnI GGCC 4 cut(s) 743, 755, 857, 1283
Bsp1286I GDGCHC 1 cut(s) 1272
Bsp13I TCCGGA 1 cut(s) 331
Bsp1407I TGTACA 1 cut(s) 687
Bsp143I GATC 7 cut(s) 88, 120, 170, 391, 577, 869, 1081
BspACI CCGC 3 cut(s) 221, 468, 471
BspANI GGCC 4 cut(s) 743, 755, 857, 1283
BspCNI CTCAG 2 cut(s) 758, 1354
BspEI TCCGGA 1 cut(s) 331
BspHI TCATGA 3 cut(s) 304, 634, 1264
BspMAI CTGCAG 2 cut(s) 327, 553
BspMI ACCTGC 1 cut(s) 1080
BspOI GCTAGC 1 cut(s) 773
BspPI GGATC 1 cut(s) 96
BspQI GCTCTTC 1 cut(s) 907
BsrDI GCAATG 1 cut(s) 1197
BsrGI TGTACA 1 cut(s) 687
BsrI ACTGG 2 cut(s) 104, 1259
BssECI CCNNGG 2 cut(s) 21, 418
BssMI GATC 7 cut(s) 88, 120, 170, 391, 577, 869, 1081
BssNAI GTATAC 1 cut(s) 1191
BssSI CACGAG 1 cut(s) 1277
Bst1107I GTATAC 1 cut(s) 1191
Bst2BI CACGAG 1 cut(s) 1277
Bst2UI CCWGG 3 cut(s) 23, 420, 539
Bst4CI ACNGT 1 cut(s) 374
Bst6I CTCTTC 3 cut(s) 46, 907, 990
BstAPI GCANNNNNTGC 2 cut(s) 249, 258
BstAUI TGTACA 1 cut(s) 687
BstC8I GCNNGC 4 cut(s) 225, 466, 771, 1404
BstDEI CTNAG 5 cut(s) 291, 351, 745, 1362, 1436
BstF5I GGATG 2 cut(s) 328, 1165
BstHHI GCGC 2 cut(s) 839, 909
BstKTI GATC 7 cut(s) 91, 123, 173, 394, 580, 872, 1084
BstMAI GTCTC 2 cut(s) 306, 1091
BstMBI GATC 7 cut(s) 88, 120, 170, 391, 577, 869, 1081
BstMWI GCNNNNNNNGC 8 cut(s) 249, 258, 548, 557, 818, 845, 854, 1023
BstNI CCWGG 3 cut(s) 23, 420, 539
BstSCI CCNGG 3 cut(s) 21, 418, 537
BstSFI CTRYAG 2 cut(s) 323, 549
BstV1I GCAGC 5 cut(s) 337, 535, 563, 785, 832
BstZ17I GTATAC 1 cut(s) 1191
Bsu36I CCTNAGG 1 cut(s) 1436
BsuI GTATCC 1 cut(s) 1306
BsuRI GGCC 4 cut(s) 743, 755, 857, 1283
BtsCI GGATG 2 cut(s) 328, 1165
BtsI GCAGTG 2 cut(s) 169, 903
BtsIMutI CAGTG 4 cut(s) 169, 387, 587, 903
BveI ACCTGC 1 cut(s) 1080
Cac8I GCNNGC 4 cut(s) 225, 466, 771, 1404
CciI TCATGA 3 cut(s) 304, 634, 1264
CfoI GCGC 2 cut(s) 839, 909
Cfr13I GGNCC 2 cut(s) 7, 428
Csp6I GTAC 3 cut(s) 28, 446, 688
CspCI CAANNNNNGTGG 2 cut(s) 786, 821
CviAII CATG 8 cut(s) 118, 305, 442, 502, 590, 635, 1123, 1265
CviQI GTAC 3 cut(s) 28, 446, 688
DdeI CTNAG 5 cut(s) 291, 351, 745, 1362, 1436
DpnI GATC 7 cut(s) 90, 122, 172, 393, 579, 871, 1083
DpnII GATC 7 cut(s) 88, 120, 170, 391, 577, 869, 1081
DraIII CACNNNGTG 1 cut(s) 898
EaeI YGGCCR 1 cut(s) 753
Eam1104I CTCTTC 3 cut(s) 46, 907, 990
EarI CTCTTC 3 cut(s) 46, 907, 990
Eco147I AGGCCT 2 cut(s) 743, 1283
Eco24I GRGCYC 1 cut(s) 1272
Eco47I GGWCC 2 cut(s) 7, 428
Eco81I CCTNAGG 1 cut(s) 1436
EcoO109I RGGNCCY 1 cut(s) 428
EcoRII CCWGG 3 cut(s) 21, 418, 537
EcoT38I GRGCYC 1 cut(s) 1272
FaeI CATG 8 cut(s) 121, 308, 445, 505, 593, 638, 1126, 1268
FatI CATG 8 cut(s) 117, 304, 441, 501, 589, 634, 1122, 1264
FauI CCCGC 1 cut(s) 228
FbaI TGATCA 2 cut(s) 391, 577
FblI GTMKAC 1 cut(s) 1190
Fnu4HI GCNGC 7 cut(s) 326, 469, 472, 549, 552, 774, 846
FokI GGATG 2 cut(s) 315, 1172
FriOI GRGCYC 1 cut(s) 1272
Fsp4HI GCNGC 7 cut(s) 326, 469, 472, 549, 552, 774, 846
FspBI CTAG 6 cut(s) 159, 380, 600, 770, 1358, 1425
GlaI GCGC 2 cut(s) 838, 908
GluI GCNGC 7 cut(s) 326, 469, 472, 549, 552, 774, 846
GsaI CCCAGC 1 cut(s) 1237
GsuI CTGGAG 4 cut(s) 87, 521, 1230, 1242
HaeIII GGCC 4 cut(s) 743, 755, 857, 1283
HapII CCGG 1 cut(s) 332
HhaI GCGC 2 cut(s) 839, 909
Hin1II CATG 8 cut(s) 121, 308, 445, 505, 593, 638, 1126, 1268
Hin6I GCGC 2 cut(s) 837, 907
HinP1I GCGC 2 cut(s) 837, 907
HindIII AAGCTT 2 cut(s) 1015, 1344
HinfI GANTC 8 cut(s) 208, 234, 299, 403, 565, 631, 793, 925
HpaII CCGG 1 cut(s) 332
HphI GGTGA 4 cut(s) 135, 587, 1033, 1070
Hpy166II GTNNAC 1 cut(s) 1191
Hpy188I TCNGA 4 cut(s) 199, 239, 316, 630
Hpy188III TCNNGA 7 cut(s) 305, 332, 635, 829, 1209, 1265, 1394
Hpy8I GTNNAC 1 cut(s) 1191
HpyAV CCTTC 3 cut(s) 263, 705, 847
HpyCH4III ACNGT 1 cut(s) 374
HpyF10VI GCNNNNNNNGC 8 cut(s) 249, 258, 548, 557, 818, 845, 854, 1023
HpyF3I CTNAG 5 cut(s) 291, 351, 745, 1362, 1436
Hsp92II CATG 8 cut(s) 121, 308, 445, 505, 593, 638, 1126, 1268
HspAI GCGC 2 cut(s) 837, 907
Kpn2I TCCGGA 1 cut(s) 331
Ksp22I TGATCA 2 cut(s) 391, 577
Kzo9I GATC 7 cut(s) 88, 120, 170, 391, 577, 869, 1081
LguI GCTCTTC 1 cut(s) 907
LmnI GCTCC 2 cut(s) 272, 1261
Lsp1109I GCAGC 5 cut(s) 337, 535, 563, 785, 832
LweI GCATC 3 cut(s) 337, 1120, 1210
MaeI CTAG 6 cut(s) 159, 380, 600, 770, 1358, 1425
MaeIII GTNAC 4 cut(s) 339, 451, 986, 1058
MalI GATC 7 cut(s) 90, 122, 172, 393, 579, 871, 1083
MboI GATC 7 cut(s) 88, 120, 170, 391, 577, 869, 1081
MboII GAAGA 6 cut(s) 33, 243, 920, 924, 1007, 1379
MhlI GDGCHC 1 cut(s) 1272
MlsI TGGCCA 1 cut(s) 755
MluCI AATT 4 cut(s) 15, 74, 901, 949
MluNI TGGCCA 1 cut(s) 755
MlyI GAGTC 2 cut(s) 202, 308
MmeI TCCRAC 1 cut(s) 1074
Mox20I TGGCCA 1 cut(s) 755
MroI TCCGGA 1 cut(s) 331
MscI TGGCCA 1 cut(s) 755
MseI TTAA 4 cut(s) 95, 720, 762, 1419
Msp20I TGGCCA 1 cut(s) 755
MspA1I CMGCKG 1 cut(s) 749
MspI CCGG 1 cut(s) 332
MspR9I CCNGG 3 cut(s) 23, 420, 539
Mva1269I GAATGC 1 cut(s) 821
MvaI CCWGG 3 cut(s) 23, 420, 539
MwoI GCNNNNNNNGC 8 cut(s) 249, 258, 548, 557, 818, 845, 854, 1023
NdeII GATC 7 cut(s) 88, 120, 170, 391, 577, 869, 1081
NheI GCTAGC 1 cut(s) 769
NlaIII CATG 8 cut(s) 121, 308, 445, 505, 593, 638, 1126, 1268
NmuCI GTSAC 4 cut(s) 339, 451, 986, 1058
PagI TCATGA 3 cut(s) 304, 634, 1264
PceI AGGCCT 2 cut(s) 743, 1283
PciSI GCTCTTC 1 cut(s) 907
PctI GAATGC 1 cut(s) 821
PfeI GAWTC 6 cut(s) 234, 403, 565, 631, 793, 925
PflMI CCANNNNNTGG 1 cut(s) 1123
PkrI GCNGC 7 cut(s) 327, 470, 473, 550, 553, 775, 847
PleI GAGTC 2 cut(s) 202, 307
PpsI GAGTC 2 cut(s) 202, 307
PpuMI RGGWCCY 1 cut(s) 428
Psp5II RGGWCCY 1 cut(s) 428
Psp6I CCWGG 3 cut(s) 21, 418, 537
PspFI CCCAGC 1 cut(s) 1233
PspGI CCWGG 3 cut(s) 21, 418, 537
PspPI GGNCC 2 cut(s) 7, 428
PspPPI RGGWCCY 1 cut(s) 428
PstI CTGCAG 2 cut(s) 327, 553
PvuII CAGCTG 1 cut(s) 749
RsaI GTAC 3 cut(s) 29, 447, 689
RsaNI GTAC 3 cut(s) 28, 446, 688
SapI GCTCTTC 1 cut(s) 907
SaqAI TTAA 4 cut(s) 95, 720, 762, 1419
SatI GCNGC 7 cut(s) 326, 469, 472, 549, 552, 774, 846
Sau3AI GATC 7 cut(s) 88, 120, 170, 391, 577, 869, 1081
Sau96I GGNCC 2 cut(s) 7, 428
SchI GAGTC 2 cut(s) 202, 308
ScrFI CCNGG 3 cut(s) 23, 420, 539
SduI GDGCHC 1 cut(s) 1272
SfaNI GCATC 3 cut(s) 337, 1120, 1210
SfcI CTRYAG 2 cut(s) 323, 549
SinI GGWCC 2 cut(s) 7, 428
Sse9I AATT 4 cut(s) 15, 74, 901, 949
SseBI AGGCCT 2 cut(s) 743, 1283
SsiI CCGC 3 cut(s) 221, 468, 471
SspMI CTAG 6 cut(s) 159, 380, 600, 770, 1358, 1425
StuI AGGCCT 2 cut(s) 743, 1283
StyD4I CCNGG 3 cut(s) 21, 418, 537
TaaI ACNGT 1 cut(s) 374
TaqI TCGA 2 cut(s) 868, 1046
TaqII GACCGA 1 cut(s) 1279
TasI AATT 4 cut(s) 15, 74, 901, 949
TatI WGTACW 2 cut(s) 27, 687
TauI GCSGC 2 cut(s) 471, 474
TfiI GAWTC 6 cut(s) 234, 403, 565, 631, 793, 925
Tru1I TTAA 4 cut(s) 95, 720, 762, 1419
Tru9I TTAA 4 cut(s) 95, 720, 762, 1419
TscAI CASTG 4 cut(s) 169, 394, 587, 903
TseFI GTSAC 4 cut(s) 339, 451, 986, 1058
TseI GCWGC 5 cut(s) 325, 548, 551, 773, 845
Tsp45I GTSAC 4 cut(s) 339, 451, 986, 1058
TspDTI ATGAA 8 cut(s) 282, 578, 623, 654, 814, 996, 1190, 1253
TspGWI ACGGA 1 cut(s) 1005
TspRI CASTG 4 cut(s) 169, 394, 587, 903
Van91I CCANNNNNTGG 1 cut(s) 1123
VpaK11BI GGWCC 2 cut(s) 7, 428
XapI RAATTY 3 cut(s) 74, 901, 949
XmiI GTMKAC 1 cut(s) 1190
XspI CTAG 6 cut(s) 159, 380, 600, 770, 1358, 1425
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.