RLG00000011003

Encoded by

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr3
OG0005901
Physical Location & Seq
Reverse (-)
5956337 .. 5957800
1464 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000011003

Sequence Viewer

Length: 1464 bp
ATGGAGGTCAAAATACTGTCCAAGGAGTACATCAAGCCCTCTTCCCCAACGCCTCCACACATTAACACATACAGATTTTCCCTCTTGGATCATGTAATGCCTCCAGTTTATGTTCCCATGGTCTTGTTCTATCCTCCTGTTTCACCTATCATCAATACTACTAGAAGTGAAAGATCACAAGCACTAAAACAATCTCTCTCAGAAACCCTGACTCGCTTTTACCCACTAGCTGGAAGAATCAGAGACTACCTTTGCATCCATTGCAACGACGAAGGAGCTTATTACATAGAGGCCGATGTCAAGTCTCATGACCTCTCGGAGTTTCTGCAGCATCCTGACTTGTCAGTACTCCCTCAGCTTCTTCCCACTTTCAACAGTTTGCTTGATTACACTGATCTAATTTCAAATGCCACCACTGGCCTAGAAGGAGAAGGAGGAGCTGATGTAGTTATGATCCAAGTGACTAACTTTGCCTGCGGCGGGTTTGTGATTGGAGTGTTTGTTTCTCATATGATTGTCGATGGCATTGCCATCAGCAATTTTCTTAAAGCTTGGGCTGCAGCCACTGCACACAGTCTATCAGGTCAGAGTGTTCATGTATTGCCTGATTTTGATGCTGCAATATTGTTCCCTCCTATTCTTGATGAACAAGGTAAGAGCACACACCCAAGAGAAGCAACCATGAGGGCATTGTACAGGCGTTTTGCCAAGAGAGGAAGGTGTGTTACGAACAGATTTGTATTTGAGGCCTCAGCTGTGGCCAAACTTAAAGAGCAAGCAGCAGCAACATCATTACAAAATCCAAGTCGTGTGGAGGCAGTGTCAGCATTCATCTGGAAATGCGCCACGGCTGCTTGGAAGGCCAAGTCTGGTCAATCTGCACCAAGTTTGATAACCCACGCAGTGAATTTGCGCCGAAGAGCTGAGCCAAATTTTTCACAAAATTGTATGGGGAATTTTGTTTGTTTAGCAGGTGCAATAGCAAATGATCATCAGAGAGAACAGGAGTTAGAGTTGTCAAGCTTGGTGAGCAAGATGAGGGAAGCAACATCGAAATTCAATGGTGACTTGGTGGCCAAGCTCCAAGGTCAAGATGGGTTAGCCACTATTAGTAAGGTTTTCCAAGACATGGCCCAGGCTATCACACTCTCCACTAATGGGGATGATCAGGTGGAGATGAACTTTATTGGGTATACCAGCATTGCCTACTCTGGAGTGTATGATGCCGATTTCGGCTGGGGAAAGCCTCTGTGGGTCGTTCCAGTTCATGAGCCCTGTCACGAGGCCTTTTCAGTCAATGTGGTTCGTTTGATGGATACAGGAGAATGGGGAAACAATGGTTTTGAAGCTTGGATTTCTCTAGCTGAAGAAGAAATGGCAATGTTGCAAATCAATCAGGACTTGCTTGCTTTTGCTTCTCTCAATCCTAGTCCTCTCAGACTAAGCCAAAATATTGTGTCCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Transferase

Protein Analysis

488

Amino Acids

53.67

Weight (kDa)

5.65

Isoelectric Point (pI)

39.66

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Transferase PF02458 1 - 467 1.3e-78 Transferase family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 962
Acc36I ACCTGC 1 cut(s) 962
AccB7I CCANNNNNTGG 2 cut(s) 230, 1129
AccI GTMKAC 1 cut(s) 1193
AciI CCGC 2 cut(s) 477, 480
AclWI GGATC 2 cut(s) 96, 448
AcoI YGGCCR 2 cut(s) 759, 1074
AcsI RAATTY 4 cut(s) 907, 931, 955, 1055
AcuI CTGAAG 1 cut(s) 1386
AdeI CACNNNGTG 1 cut(s) 904
AfaI GTAC 3 cut(s) 29, 348, 695
AfiI CCNNNNNNNGG 4 cut(s) 230, 480, 1129, 1158
AgsI TTSAA 4 cut(s) 373, 405, 1060, 1346
AjnI CCWGG 1 cut(s) 1134
Alw21I GWGCWC 1 cut(s) 662
Alw26I GTCTC 2 cut(s) 237, 309
AlwI GGATC 2 cut(s) 96, 448
AlwNI CAGNNNCTG 1 cut(s) 566
AoxI GGCC 8 cut(s) 291, 418, 747, 759, 861, 1074, 1131, 1284
ApeKI GCWGC 7 cut(s) 328, 557, 560, 617, 779, 782, 851
ApoI RAATTY 4 cut(s) 907, 931, 955, 1055
ArsI GACNNNNNNTTYG 2 cut(s) 790, 822
AspLEI GCGC 2 cut(s) 845, 915
AspS9I GGNCC 1 cut(s) 1132
AsuHPI GGTGA 3 cut(s) 135, 1039, 1076
BalI TGGCCA 2 cut(s) 761, 1076
BanII GRGCYC 1 cut(s) 1275
BarI GAAGNNNNNNTAC 2 cut(s) 709, 741
BauI CACGAG 1 cut(s) 1280
Bbv12I GWGCWC 1 cut(s) 662
BbvCI CCTCAGC 2 cut(s) 354, 751
BbvI GCAGC 7 cut(s) 340, 544, 572, 604, 791, 794, 838
BccI CCATC 4 cut(s) 515, 539, 1088, 1306
BceAI ACGGC 1 cut(s) 864
BcgI CGANNNNNNTGC 2 cut(s) 509, 543
BciT130I CCWGG 1 cut(s) 1136
BciVI GTATCC 1 cut(s) 1309
BclI TGATCA 2 cut(s) 988, 1165
BcoDI GTCTC 2 cut(s) 237, 309
BfaI CTAG 6 cut(s) 162, 227, 422, 1361, 1428, 1462
BfmI CTRYAG 2 cut(s) 326, 558
BfuAI ACCTGC 1 cut(s) 962
BfuI GTATCC 1 cut(s) 1309
BisI GCNGC 8 cut(s) 329, 478, 558, 561, 618, 780, 783, 852
BlpI GCTNAGC 1 cut(s) 924
BlsI GCNGC 8 cut(s) 330, 479, 559, 562, 619, 781, 784, 853
BmcAI AGTACT 1 cut(s) 348
Bme1390I CCNGG 1 cut(s) 1136
BmgT120I GGNCC 1 cut(s) 1132
BmrFI CCNGG 1 cut(s) 1136
BmsI GCATC 4 cut(s) 264, 340, 604, 1213
BpmI CTGGAG 2 cut(s) 87, 1233
Bpu10I CCTNAGC 2 cut(s) 354, 751
Bpu1102I GCTNAGC 1 cut(s) 924
BsaJI CCNNGG 5 cut(s) 21, 117, 846, 1084, 1134
BsaXI ACNNNNNCTCC 8 cut(s) 429, 459, 486, 516, 806, 836, 998, 1028
Bsc4I CCNNNNNNNGG 4 cut(s) 230, 480, 1129, 1158
Bse1I ACTGG 3 cut(s) 104, 421, 1262
Bse3DI GCAATG 4 cut(s) 259, 525, 1200, 1386
BseBI CCWGG 1 cut(s) 1136
BseDI CCNNGG 5 cut(s) 21, 117, 846, 1084, 1134
BseGI GGATG 3 cut(s) 255, 331, 1168
BseLI CCNNNNNNNGG 4 cut(s) 230, 480, 1129, 1158
BseMI GCAATG 4 cut(s) 259, 525, 1200, 1386
BseMII CTCAG 5 cut(s) 213, 368, 765, 915, 1450
BseNI ACTGG 3 cut(s) 104, 421, 1262
BseRI GAGGAG 1 cut(s) 450
BseXI GCAGC 7 cut(s) 340, 544, 572, 604, 791, 794, 838
BseYI CCCAGC 1 cut(s) 1236
BsgI GTGCAG 2 cut(s) 552, 864
BshFI GGCC 8 cut(s) 293, 420, 749, 761, 863, 1076, 1133, 1286
BsiHKAI GWGCWC 1 cut(s) 662
BslI CCNNNNNNNGG 4 cut(s) 230, 480, 1129, 1158
BsmAI GTCTC 2 cut(s) 237, 309
BsmI GAATGC 1 cut(s) 827
BsnI GGCC 8 cut(s) 293, 420, 749, 761, 863, 1076, 1133, 1286
Bsp1286I GDGCHC 2 cut(s) 662, 1275
Bsp1407I TGTACA 1 cut(s) 693
Bsp143I GATC 6 cut(s) 88, 173, 394, 453, 988, 1165
Bsp1720I GCTNAGC 1 cut(s) 924
Bsp19I CCATGG 1 cut(s) 117
BspACI CCGC 2 cut(s) 477, 480
BspANI GGCC 8 cut(s) 293, 420, 749, 761, 863, 1076, 1133, 1286
BspCNI CTCAG 5 cut(s) 212, 367, 764, 916, 1449
BspHI TCATGA 2 cut(s) 307, 1267
BspMAI CTGCAG 2 cut(s) 330, 562
BspMI ACCTGC 1 cut(s) 962
BspPI GGATC 2 cut(s) 96, 448
BspQI GCTCTTC 1 cut(s) 913
BsrDI GCAATG 4 cut(s) 259, 525, 1200, 1386
BsrGI TGTACA 1 cut(s) 693
BsrI ACTGG 3 cut(s) 104, 421, 1262
BssECI CCNNGG 5 cut(s) 21, 117, 846, 1084, 1134
BssMI GATC 6 cut(s) 88, 173, 394, 453, 988, 1165
BssNAI GTATAC 1 cut(s) 1194
BssSI CACGAG 1 cut(s) 1280
BssT1I CCWWGG 3 cut(s) 21, 117, 1084
Bst1107I GTATAC 1 cut(s) 1194
Bst2BI CACGAG 1 cut(s) 1280
Bst2UI CCWGG 1 cut(s) 1136
Bst4CI ACNGT 3 cut(s) 18, 377, 575
Bst6I CTCTTC 2 cut(s) 46, 913
BstAPI GCANNNNNTGC 2 cut(s) 261, 566
BstAUI TGTACA 1 cut(s) 693
BstC8I GCNNGC 3 cut(s) 475, 777, 1407
BstDEI CTNAG 6 cut(s) 199, 354, 751, 924, 1436, 1442
BstDSI CCRYGG 2 cut(s) 117, 846
BstF5I GGATG 3 cut(s) 255, 331, 1168
BstHHI GCGC 2 cut(s) 845, 915
BstKTI GATC 6 cut(s) 91, 176, 397, 456, 991, 1168
BstMAI GTCTC 2 cut(s) 237, 309
BstMBI GATC 6 cut(s) 88, 173, 394, 453, 988, 1165
BstMWI GCNNNNNNNGC 7 cut(s) 261, 557, 566, 824, 851, 860, 1029
BstNI CCWGG 1 cut(s) 1136
BstSCI CCNGG 1 cut(s) 1134
BstSFI CTRYAG 2 cut(s) 326, 558
BstV1I GCAGC 7 cut(s) 340, 544, 572, 604, 791, 794, 838
BstZ17I GTATAC 1 cut(s) 1194
BsuI GTATCC 1 cut(s) 1309
BsuRI GGCC 8 cut(s) 293, 420, 749, 761, 863, 1076, 1133, 1286
BtgI CCRYGG 2 cut(s) 117, 846
BtsCI GGATG 3 cut(s) 255, 331, 1168
BtsI GCAGTG 3 cut(s) 564, 825, 909
BtsIMutI CAGTG 5 cut(s) 390, 414, 564, 825, 909
BveI ACCTGC 1 cut(s) 962
Cac8I GCNNGC 3 cut(s) 475, 777, 1407
CaiI CAGNNNCTG 1 cut(s) 566
CciI TCATGA 2 cut(s) 307, 1267
CfoI GCGC 2 cut(s) 845, 915
Cfr13I GGNCC 1 cut(s) 1132
Csp6I GTAC 3 cut(s) 28, 347, 694
CspCI CAANNNNNGTGG 2 cut(s) 792, 827
CviAII CATG 7 cut(s) 92, 118, 308, 596, 682, 1129, 1268
CviQI GTAC 3 cut(s) 28, 347, 694
DdeI CTNAG 6 cut(s) 199, 354, 751, 924, 1436, 1442
DpnI GATC 6 cut(s) 90, 175, 396, 455, 990, 1167
DpnII GATC 6 cut(s) 88, 173, 394, 453, 988, 1165
DraIII CACNNNGTG 1 cut(s) 904
EaeI YGGCCR 2 cut(s) 759, 1074
Eam1104I CTCTTC 2 cut(s) 46, 913
EarI CTCTTC 2 cut(s) 46, 913
Eco130I CCWWGG 3 cut(s) 21, 117, 1084
Eco147I AGGCCT 2 cut(s) 749, 1286
Eco24I GRGCYC 1 cut(s) 1275
Eco57I CTGAAG 1 cut(s) 1386
EcoRII CCWGG 1 cut(s) 1134
EcoT14I CCWWGG 3 cut(s) 21, 117, 1084
EcoT38I GRGCYC 1 cut(s) 1275
ErhI CCWWGG 3 cut(s) 21, 117, 1084
FaeI CATG 7 cut(s) 95, 121, 311, 599, 685, 1132, 1271
FatI CATG 7 cut(s) 91, 117, 307, 595, 681, 1128, 1267
FauI CCCGC 1 cut(s) 473
FauNDI CATATG 1 cut(s) 510
FbaI TGATCA 2 cut(s) 988, 1165
FblI GTMKAC 1 cut(s) 1193
Fnu4HI GCNGC 8 cut(s) 329, 478, 558, 561, 618, 780, 783, 852
FokI GGATG 3 cut(s) 242, 318, 1175
FriOI GRGCYC 1 cut(s) 1275
Fsp4HI GCNGC 8 cut(s) 329, 478, 558, 561, 618, 780, 783, 852
FspBI CTAG 6 cut(s) 162, 227, 422, 1361, 1428, 1462
GlaI GCGC 2 cut(s) 844, 914
GluI GCNGC 8 cut(s) 329, 478, 558, 561, 618, 780, 783, 852
GsaI CCCAGC 1 cut(s) 1240
GsuI CTGGAG 2 cut(s) 87, 1233
HaeIII GGCC 8 cut(s) 293, 420, 749, 761, 863, 1076, 1133, 1286
HhaI GCGC 2 cut(s) 845, 915
Hin1II CATG 7 cut(s) 95, 121, 311, 599, 685, 1132, 1271
Hin6I GCGC 2 cut(s) 843, 913
HinP1I GCGC 2 cut(s) 843, 913
HindIII AAGCTT 3 cut(s) 549, 1021, 1347
HinfI GANTC 2 cut(s) 211, 237
HphI GGTGA 3 cut(s) 135, 1039, 1076
Hpy166II GTNNAC 1 cut(s) 1194
Hpy188I TCNGA 6 cut(s) 202, 242, 319, 588, 996, 1439
Hpy188III TCNNGA 9 cut(s) 308, 335, 641, 835, 1091, 1212, 1268, 1280, 1397
Hpy8I GTNNAC 1 cut(s) 1194
Hpy99I CGWCG 1 cut(s) 272
HpyAV CCTTC 5 cut(s) 266, 419, 425, 711, 853
HpyCH4III ACNGT 3 cut(s) 18, 377, 575
HpyCH4V TGCA 9 cut(s) 255, 264, 328, 560, 569, 620, 881, 977, 1387
HpyF10VI GCNNNNNNNGC 7 cut(s) 261, 557, 566, 824, 851, 860, 1029
HpyF3I CTNAG 6 cut(s) 199, 354, 751, 924, 1436, 1442
Hsp92II CATG 7 cut(s) 95, 121, 311, 599, 685, 1132, 1271
HspAI GCGC 2 cut(s) 843, 913
Ksp22I TGATCA 2 cut(s) 988, 1165
Kzo9I GATC 6 cut(s) 88, 173, 394, 453, 988, 1165
LguI GCTCTTC 1 cut(s) 913
LmnI GCTCC 3 cut(s) 275, 437, 1086
Lsp1109I GCAGC 7 cut(s) 340, 544, 572, 604, 791, 794, 838
LweI GCATC 4 cut(s) 264, 340, 604, 1213
MaeI CTAG 6 cut(s) 162, 227, 422, 1361, 1428, 1462
MaeIII GTNAC 4 cut(s) 460, 724, 1064, 1277
MalI GATC 6 cut(s) 90, 175, 396, 455, 990, 1167
MboI GATC 6 cut(s) 88, 173, 394, 453, 988, 1165
MboII GAAGA 6 cut(s) 33, 246, 353, 930, 1379, 1382
MhlI GDGCHC 2 cut(s) 662, 1275
MlsI TGGCCA 2 cut(s) 761, 1076
MluCI AATT 7 cut(s) 399, 538, 907, 931, 943, 955, 1055
MluNI TGGCCA 2 cut(s) 761, 1076
MlyI GAGTC 1 cut(s) 205
Mox20I TGGCCA 2 cut(s) 761, 1076
MscI TGGCCA 2 cut(s) 761, 1076
MseI TTAA 3 cut(s) 63, 546, 768
Msp20I TGGCCA 2 cut(s) 761, 1076
MspA1I CMGCKG 1 cut(s) 755
MspR9I CCNGG 1 cut(s) 1136
Mva1269I GAATGC 1 cut(s) 827
MvaI CCWGG 1 cut(s) 1136
MwoI GCNNNNNNNGC 7 cut(s) 261, 557, 566, 824, 851, 860, 1029
NcoI CCATGG 1 cut(s) 117
NdeI CATATG 1 cut(s) 510
NdeII GATC 6 cut(s) 88, 173, 394, 453, 988, 1165
NlaIII CATG 7 cut(s) 95, 121, 311, 599, 685, 1132, 1271
NmuCI GTSAC 3 cut(s) 460, 1064, 1277
PagI TCATGA 2 cut(s) 307, 1267
PaqCI CACCTGC 1 cut(s) 962
PceI AGGCCT 2 cut(s) 749, 1286
PciSI GCTCTTC 1 cut(s) 913
PctI GAATGC 1 cut(s) 827
PfeI GAWTC 1 cut(s) 237
PflMI CCANNNNNTGG 2 cut(s) 230, 1129
PkrI GCNGC 8 cut(s) 330, 479, 559, 562, 619, 781, 784, 853
PleI GAGTC 1 cut(s) 205
PpsI GAGTC 1 cut(s) 205
Psp6I CCWGG 1 cut(s) 1134
PspFI CCCAGC 1 cut(s) 1236
PspGI CCWGG 1 cut(s) 1134
PspPI GGNCC 1 cut(s) 1132
PstI CTGCAG 2 cut(s) 330, 562
PstNI CAGNNNCTG 1 cut(s) 566
PvuII CAGCTG 1 cut(s) 755
RsaI GTAC 3 cut(s) 29, 348, 695
RsaNI GTAC 3 cut(s) 28, 347, 694
SapI GCTCTTC 1 cut(s) 913
SaqAI TTAA 3 cut(s) 63, 546, 768
SatI GCNGC 8 cut(s) 329, 478, 558, 561, 618, 780, 783, 852
Sau3AI GATC 6 cut(s) 88, 173, 394, 453, 988, 1165
Sau96I GGNCC 1 cut(s) 1132
ScaI AGTACT 1 cut(s) 348
SchI GAGTC 1 cut(s) 205
ScrFI CCNGG 1 cut(s) 1136
SduI GDGCHC 2 cut(s) 662, 1275
SfaNI GCATC 4 cut(s) 264, 340, 604, 1213
SfcI CTRYAG 2 cut(s) 326, 558
Sse9I AATT 7 cut(s) 399, 538, 907, 931, 943, 955, 1055
SseBI AGGCCT 2 cut(s) 749, 1286
SsiI CCGC 2 cut(s) 477, 480
SspI AATATT 2 cut(s) 624, 1453
SspMI CTAG 6 cut(s) 162, 227, 422, 1361, 1428, 1462
StuI AGGCCT 2 cut(s) 749, 1286
StyD4I CCNGG 1 cut(s) 1134
StyI CCWWGG 3 cut(s) 21, 117, 1084
TaaI ACNGT 3 cut(s) 18, 377, 575
TaqI TCGA 2 cut(s) 519, 1052
TasI AATT 7 cut(s) 399, 538, 907, 931, 943, 955, 1055
TatI WGTACW 3 cut(s) 27, 346, 693
TauI GCSGC 1 cut(s) 480
TfiI GAWTC 1 cut(s) 237
Tru1I TTAA 3 cut(s) 63, 546, 768
Tru9I TTAA 3 cut(s) 63, 546, 768
TscAI CASTG 5 cut(s) 397, 421, 571, 825, 909
TseFI GTSAC 3 cut(s) 460, 1064, 1277
TseI GCWGC 7 cut(s) 328, 557, 560, 617, 779, 782, 851
Tsp45I GTSAC 3 cut(s) 460, 1064, 1277
TspDTI ATGAA 5 cut(s) 584, 660, 820, 1193, 1256
TspRI CASTG 5 cut(s) 397, 421, 571, 825, 909
Van91I CCANNNNNTGG 2 cut(s) 230, 1129
XapI RAATTY 4 cut(s) 907, 931, 955, 1055
XcmI CCANNNNNNNNNTGG 1 cut(s) 1091
XmiI GTMKAC 1 cut(s) 1193
XspI CTAG 6 cut(s) 162, 227, 422, 1361, 1428, 1462
ZrmI AGTACT 1 cut(s) 348
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.