Rh6CG455300

Encoded by

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6C
OG0005901
Physical Location & Seq
Forward (+)
63082850 .. 63111965
29116 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6CG455300.1

Sequence Viewer

Length: 1167 bp
ATGATCCAAGTGACTAACTTTGCCTGCGGCGGGTTTGTGATTGGAGTGTTTGTTTCTCATATGATTGTTGATGGCATTGCCATCAGCAATTTTCTTAAAGCTTGGGCTGCAGCCACTGCACAGAGTCTATCAGGTCAGAGTGTTCATGTATTGCCTGATTTTGATGCTGCAACATTGTTCCCTCCTATTCTTGATGAACAAGGTAAGAGCACACACCCAAGAGAAGCAACCATGAGGGGATTGTACAGGCGTTTTGCCAAGAGAGGAAGGTGTATTACGAACAGATTTGTGTTTGAGGCCTCAGCTGTGGCCAAACTTAAAGAGCAAGCAGCAACATCATCATTACAAAATCCAAGTCGGGTGGAGGCAGTGTCAGCATTCATCTGGAAATGCGCCACGGCTGCTTGGAAGGCCAAGTCTGGTCAATCTGCACCGAGTTTGATAACCCACGCAGTGAATTTGCGCCGAAGAGCTGAGCCGAATTTTTCCCAAAATTGTATGGGGAATTTTGTTTGTTTGGCAGGTGCAATAGCAAATGATCATCAGAGAGAACAGGAGTTAGAGTTGTCAAGCTTGGTGAGCAAGATGAGGGAAGCAACATCGAAATTCAATGGTGACTTGGTGGCCAAGCTCCAAGGTCAAGATGGTGATGTATTCCCACAAGAAGCAACTATGATGGCTTTCTGGAGCTGGTTTCTTAGAATGGGTAAGTGTGCTACAAGAAGAGCTATATTTGATTCCATAGCTATTGCCGAACTTAAGGCCAAAGCAGCAGCAACCTCAAGCGTGCCAAACCCATGCCAACAAGTGTGGAGGTTGTTACGGCACTCATTTGGAAATGTGATGCGGCTGCACTTGCCTTCAATGCCAAAAGTACTGATCAGAGGTCATCATCCCTTGAACAGCCACACAGTCAATCTGCGCCGAAGAGCTGTGCCACCATTCTCAGAGAACTACAGACTGCTCTTTGTTAATTCTCACTGTGTTGTAAGTGGAACTCAGGAGGCAGGAGCTGATAATTGCAATGTACCTGCAGAGCAAGAAATAATAATATTAAGCCAGTTTTCCAGCTGGATTTCTTTAGATGAAGAAGAAACGGCTTTGTTGCAAAGCAACCAGGACTTGCTTGCTATCGCATCTCTCAATATCCTAGTCTTCTCAGGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Transferase

Protein Analysis

388

Amino Acids

42.67

Weight (kDa)

9.11

Isoelectric Point (pI)

45.91

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Transferase PF02458 2 - 202 2.1e-34 Transferase family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 512
Acc36I ACCTGC 2 cut(s) 512, 1039
AciI CCGC 3 cut(s) 27, 30, 847
AcoI YGGCCR 2 cut(s) 309, 624
AcsI RAATTY 4 cut(s) 457, 481, 505, 605
AdeI CACNNNGTG 1 cut(s) 454
AfaI GTAC 3 cut(s) 245, 876, 1029
AfiI CCNNNNNNNGG 1 cut(s) 30
AflII CTTAAG 1 cut(s) 758
AgsI TTSAA 3 cut(s) 610, 864, 901
AjnI CCWGG 1 cut(s) 1116
Alw21I GWGCWC 1 cut(s) 212
AlwNI CAGNNNCTG 2 cut(s) 116, 1013
AoxI GGCC 5 cut(s) 297, 309, 411, 624, 762
ApeKI GCWGC 8 cut(s) 107, 110, 167, 329, 401, 770, 773, 850
ApoI RAATTY 4 cut(s) 457, 481, 505, 605
ArsI GACNNNNNNTTYG 2 cut(s) 340, 372
AspLEI GCGC 3 cut(s) 395, 465, 924
AsuHPI GGTGA 3 cut(s) 589, 626, 659
BalI TGGCCA 2 cut(s) 311, 626
BarI GAAGNNNNNNTAC 2 cut(s) 259, 291
BbsI GAAGAC 1 cut(s) 1147
Bbv12I GWGCWC 1 cut(s) 212
BbvCI CCTCAGC 1 cut(s) 301
BbvI GCAGC 8 cut(s) 94, 122, 154, 341, 388, 782, 785, 837
BccI CCATC 4 cut(s) 65, 89, 638, 670
BceAI ACGGC 3 cut(s) 414, 839, 1113
BciT130I CCWGG 1 cut(s) 1118
BclI TGATCA 2 cut(s) 538, 879
BfaI CTAG 1 cut(s) 1151
BfmI CTRYAG 3 cut(s) 108, 955, 1032
BfrI CTTAAG 1 cut(s) 758
BfuAI ACCTGC 2 cut(s) 512, 1039
BlpI GCTNAGC 1 cut(s) 474
BmcAI AGTACT 1 cut(s) 876
Bme1390I CCNGG 1 cut(s) 1118
BmrFI CCNGG 1 cut(s) 1118
BmsI GCATC 3 cut(s) 154, 834, 1145
BpiI GAAGAC 1 cut(s) 1147
BpmI CTGGAG 1 cut(s) 706
Bpu10I CCTNAGC 1 cut(s) 301
Bpu1102I GCTNAGC 1 cut(s) 474
BpuEI CTTGAG 1 cut(s) 766
BsaJI CCNNGG 2 cut(s) 396, 634
BsaXI ACNNNNNCTCC 6 cut(s) 36, 66, 356, 386, 548, 578
Bsc4I CCNNNNNNNGG 1 cut(s) 30
Bse1I ACTGG 1 cut(s) 1060
Bse3DI GCAATG 2 cut(s) 75, 1030
BseBI CCWGG 1 cut(s) 1118
BseDI CCNNGG 2 cut(s) 396, 634
BseGI GGATG 1 cut(s) 892
BseLI CCNNNNNNNGG 1 cut(s) 30
BseMI GCAATG 2 cut(s) 75, 1030
BseMII CTCAG 4 cut(s) 315, 465, 960, 1013
BseNI ACTGG 1 cut(s) 1060
BseXI GCAGC 8 cut(s) 94, 122, 154, 341, 388, 782, 785, 837
BsgI GTGCAG 3 cut(s) 102, 414, 836
BshFI GGCC 5 cut(s) 299, 311, 413, 626, 764
BsiHKAI GWGCWC 1 cut(s) 212
BslI CCNNNNNNNGG 1 cut(s) 30
BsmI GAATGC 1 cut(s) 377
BsnI GGCC 5 cut(s) 299, 311, 413, 626, 764
Bsp1286I GDGCHC 1 cut(s) 212
Bsp1407I TGTACA 1 cut(s) 243
Bsp143I GATC 3 cut(s) 3, 538, 879
Bsp1720I GCTNAGC 1 cut(s) 474
BspACI CCGC 3 cut(s) 27, 30, 847
BspANI GGCC 5 cut(s) 299, 311, 413, 626, 764
BspCNI CTCAG 4 cut(s) 314, 466, 959, 1012
BspMAI CTGCAG 2 cut(s) 112, 1036
BspMI ACCTGC 2 cut(s) 512, 1039
BspQI GCTCTTC 3 cut(s) 463, 718, 922
BspTI CTTAAG 1 cut(s) 758
BsrDI GCAATG 2 cut(s) 75, 1030
BsrGI TGTACA 1 cut(s) 243
BsrI ACTGG 1 cut(s) 1060
BssECI CCNNGG 2 cut(s) 396, 634
BssMI GATC 3 cut(s) 3, 538, 879
BssT1I CCWWGG 1 cut(s) 634
Bst2UI CCWGG 1 cut(s) 1118
Bst4CI ACNGT 2 cut(s) 913, 983
Bst6I CTCTTC 3 cut(s) 463, 718, 922
BstAFI CTTAAG 1 cut(s) 758
BstAPI GCANNNNNTGC 1 cut(s) 116
BstAUI TGTACA 1 cut(s) 243
BstC8I GCNNGC 4 cut(s) 25, 327, 788, 1128
BstDEI CTNAG 6 cut(s) 301, 474, 698, 946, 999, 1159
BstDSI CCRYGG 1 cut(s) 396
BstF5I GGATG 1 cut(s) 892
BstHHI GCGC 3 cut(s) 395, 465, 924
BstKTI GATC 3 cut(s) 6, 541, 882
BstMBI GATC 3 cut(s) 3, 538, 879
BstMWI GCNNNNNNNGC 9 cut(s) 107, 116, 374, 401, 410, 579, 770, 856, 865
BstNI CCWGG 1 cut(s) 1118
BstSCI CCNGG 1 cut(s) 1116
BstSFI CTRYAG 3 cut(s) 108, 955, 1032
BstV1I GCAGC 8 cut(s) 94, 122, 154, 341, 388, 782, 785, 837
BstV2I GAAGAC 1 cut(s) 1147
BsuRI GGCC 5 cut(s) 299, 311, 413, 626, 764
BtgI CCRYGG 1 cut(s) 396
BtsCI GGATG 1 cut(s) 892
BtsI GCAGTG 3 cut(s) 114, 375, 459
BtsIMutI CAGTG 4 cut(s) 114, 375, 459, 979
BveI ACCTGC 2 cut(s) 512, 1039
Cac8I GCNNGC 4 cut(s) 25, 327, 788, 1128
CaiI CAGNNNCTG 2 cut(s) 116, 1013
CfoI GCGC 3 cut(s) 395, 465, 924
Csp6I GTAC 3 cut(s) 244, 875, 1028
CspCI CAANNNNNGTGG 4 cut(s) 342, 377, 791, 826
CviAII CATG 3 cut(s) 146, 232, 798
CviQI GTAC 3 cut(s) 244, 875, 1028
DdeI CTNAG 6 cut(s) 301, 474, 698, 946, 999, 1159
DpnI GATC 3 cut(s) 5, 540, 881
DpnII GATC 3 cut(s) 3, 538, 879
DraIII CACNNNGTG 1 cut(s) 454
EaeI YGGCCR 2 cut(s) 309, 624
Eam1104I CTCTTC 3 cut(s) 463, 718, 922
EarI CTCTTC 3 cut(s) 463, 718, 922
Eco130I CCWWGG 1 cut(s) 634
Eco147I AGGCCT 1 cut(s) 299
EcoRII CCWGG 1 cut(s) 1116
EcoT14I CCWWGG 1 cut(s) 634
ErhI CCWWGG 1 cut(s) 634
FaeI CATG 3 cut(s) 149, 235, 801
FaiI YATR 9 cut(s) 60, 62, 147, 233, 500, 674, 731, 743, 799
FatI CATG 3 cut(s) 145, 231, 797
FauI CCCGC 1 cut(s) 23
FauNDI CATATG 1 cut(s) 60
FbaI TGATCA 2 cut(s) 538, 879
FokI GGATG 1 cut(s) 879
FspBI CTAG 1 cut(s) 1151
GlaI GCGC 3 cut(s) 394, 464, 923
GsuI CTGGAG 1 cut(s) 706
HaeIII GGCC 5 cut(s) 299, 311, 413, 626, 764
HhaI GCGC 3 cut(s) 395, 465, 924
Hin1II CATG 3 cut(s) 149, 235, 801
Hin6I GCGC 3 cut(s) 393, 463, 922
HinP1I GCGC 3 cut(s) 393, 463, 922
HindIII AAGCTT 2 cut(s) 99, 571
HinfI GANTC 2 cut(s) 124, 737
HphI GGTGA 3 cut(s) 589, 626, 659
Hpy188I TCNGA 4 cut(s) 138, 546, 884, 949
Hpy188III TCNNGA 5 cut(s) 191, 385, 641, 685, 1001
HpyAV CCTTC 3 cut(s) 261, 403, 870
HpyCH4III ACNGT 2 cut(s) 913, 983
HpyCH4V TGCA 9 cut(s) 110, 119, 170, 431, 527, 853, 1023, 1034, 1108
HpyF10VI GCNNNNNNNGC 9 cut(s) 107, 116, 374, 401, 410, 579, 770, 856, 865
HpyF3I CTNAG 6 cut(s) 301, 474, 698, 946, 999, 1159
Hsp92II CATG 3 cut(s) 149, 235, 801
HspAI GCGC 3 cut(s) 393, 463, 922
Ksp22I TGATCA 2 cut(s) 538, 879
Kzo9I GATC 3 cut(s) 3, 538, 879
LguI GCTCTTC 3 cut(s) 463, 718, 922
LmnI GCTCC 3 cut(s) 636, 687, 1010
Lsp1109I GCAGC 8 cut(s) 94, 122, 154, 341, 388, 782, 785, 837
LweI GCATC 3 cut(s) 154, 834, 1145
MaeI CTAG 1 cut(s) 1151
MaeIII GTNAC 3 cut(s) 10, 614, 819
MalI GATC 3 cut(s) 5, 540, 881
MboI GATC 3 cut(s) 3, 538, 879
MboII GAAGA 6 cut(s) 480, 735, 939, 1100, 1103, 1147
MhlI GDGCHC 1 cut(s) 212
MlsI TGGCCA 2 cut(s) 311, 626
MluCI AATT 8 cut(s) 88, 457, 481, 493, 505, 605, 973, 1018
MluNI TGGCCA 2 cut(s) 311, 626
MlyI GAGTC 1 cut(s) 133
Mox20I TGGCCA 2 cut(s) 311, 626
MscI TGGCCA 2 cut(s) 311, 626
MseI TTAA 6 cut(s) 96, 318, 759, 972, 1055, 1165
Msp20I TGGCCA 2 cut(s) 311, 626
MspA1I CMGCKG 2 cut(s) 305, 1071
MspCI CTTAAG 1 cut(s) 758
MspR9I CCNGG 1 cut(s) 1118
Mva1269I GAATGC 1 cut(s) 377
MvaI CCWGG 1 cut(s) 1118
MwoI GCNNNNNNNGC 9 cut(s) 107, 116, 374, 401, 410, 579, 770, 856, 865
NdeI CATATG 1 cut(s) 60
NdeII GATC 3 cut(s) 3, 538, 879
NlaIII CATG 3 cut(s) 149, 235, 801
NmuCI GTSAC 2 cut(s) 10, 614
PaqCI CACCTGC 1 cut(s) 512
PceI AGGCCT 1 cut(s) 299
PciSI GCTCTTC 3 cut(s) 463, 718, 922
PctI GAATGC 1 cut(s) 377
PfeI GAWTC 1 cut(s) 737
PleI GAGTC 1 cut(s) 132
PpsI GAGTC 1 cut(s) 132
Psp6I CCWGG 1 cut(s) 1116
PspGI CCWGG 1 cut(s) 1116
PstI CTGCAG 2 cut(s) 112, 1036
PstNI CAGNNNCTG 2 cut(s) 116, 1013
PvuII CAGCTG 2 cut(s) 305, 1071
RsaI GTAC 3 cut(s) 245, 876, 1029
RsaNI GTAC 3 cut(s) 244, 875, 1028
SapI GCTCTTC 3 cut(s) 463, 718, 922
SaqAI TTAA 6 cut(s) 96, 318, 759, 972, 1055, 1165
Sau3AI GATC 3 cut(s) 3, 538, 879
ScaI AGTACT 1 cut(s) 876
SchI GAGTC 1 cut(s) 133
ScrFI CCNGG 1 cut(s) 1118
SduI GDGCHC 1 cut(s) 212
SfaNI GCATC 3 cut(s) 154, 834, 1145
SfcI CTRYAG 3 cut(s) 108, 955, 1032
SmlI CTYRAG 2 cut(s) 758, 781
SmoI CTYRAG 2 cut(s) 758, 781
Sse9I AATT 8 cut(s) 88, 457, 481, 493, 505, 605, 973, 1018
SseBI AGGCCT 1 cut(s) 299
SsiI CCGC 3 cut(s) 27, 30, 847
SspI AATATT 1 cut(s) 1053
SspMI CTAG 1 cut(s) 1151
StuI AGGCCT 1 cut(s) 299
StyD4I CCNGG 1 cut(s) 1116
StyI CCWWGG 1 cut(s) 634
TaaI ACNGT 2 cut(s) 913, 983
TaqI TCGA 1 cut(s) 602
TasI AATT 8 cut(s) 88, 457, 481, 493, 505, 605, 973, 1018
TatI WGTACW 2 cut(s) 243, 874
TauI GCSGC 2 cut(s) 30, 850
TfiI GAWTC 1 cut(s) 737
Tru1I TTAA 6 cut(s) 96, 318, 759, 972, 1055, 1165
Tru9I TTAA 6 cut(s) 96, 318, 759, 972, 1055, 1165
TscAI CASTG 4 cut(s) 121, 375, 459, 986
TseFI GTSAC 2 cut(s) 10, 614
TseI GCWGC 8 cut(s) 107, 110, 167, 329, 401, 770, 773, 850
Tsp45I GTSAC 2 cut(s) 10, 614
TspDTI ATGAA 4 cut(s) 134, 210, 370, 1101
TspRI CASTG 4 cut(s) 121, 375, 459, 986
Vha464I CTTAAG 1 cut(s) 758
XapI RAATTY 4 cut(s) 457, 481, 505, 605
XcmI CCANNNNNNNNNTGG 1 cut(s) 641
XspI CTAG 1 cut(s) 1151
ZrmI AGTACT 1 cut(s) 876
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.