Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb3

Orthogroup ID

OG0006877

Physical Location & Seq

Genomic Coordinates Forward (+)

693682 .. 695791

Gene Structure 2110 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_3g01370.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 966 bp

ATGGAAGACAGCCGTAGATTCAAACCCAAAACCGAGAGAAGACGACGAGCCACCACCGACTCCAGCTCGCCGGAATTCGACTTCTGGAGGCTGCAGAACCCGTCTTGCCCGCAACCTGATCTCGTCTCCGCCGATGAGCTCTTCGTCGACGGCGTCATTCTCCCACTCCGCCTCGTCCCCGCCTACAAAAACCCGCCCGACCCGAACCCGCGACCCGACCCGGAGGAGATTTCTGCTCCGGACCCAGAACCCGAAGCCCAGGTGGCGACCGGAGCTCCGGCGATGACGGCTTCGAAGCGGTGGAGGGACATGTTCAAGAAGAAGAGCGAGGGCGGTGAGAAGGAGAAGAAGAAGGAGCGGAAGAGCGGCGGCGGAGCAGCCGCCGGAGCTAGCTCGGCGGAGCTGAACATAAATCTGTGGCCGTTTTCGCGGAGCAGATCCGCCGGGAATGCTTGTACCCGACCCAAATCAGCTTTCGGGGCTCCGGGGACCCGGAAGGTGAACAGCGCGCCGTGCTCGAGGAGCAACTCAACGGGCGAGTCCAAGTCGACGAGGAAGTGGCCGGCGAGTCCGGGTCGGGGCGGGGTCCACTTGGGTCGGAGCAGCCCGGTTTGGCAAGTCCGGCGTGGAGCCTCCGGTTTGAGCAAAACCGCCGACAGAAATGCCGAAAAAAGCGCCAAAACAGAAGCGCCCGAAACTCGCCGGAGTAAAACCACCGTAGGAGGTGGCGGAGGTGGTGCAAAGCCTAGAGTCTTGAACTTGAATGTTCCAACTTGTATTGGGTATAGAAGCCATTTGATGAGTTGTAGGAATGACGTCATGAATAGTGCTGTAGGAGTCCGTGGAGGTAGCAACACCAACAACCGTGGCGCCGCCGCCGCTGACGGTGGTGGAGTTAGTAATGCTGCTGGGGCTGGTAGTAATCTTTTTAATCTGCGCAGCCTTTTCTCTAAGAAGGTGTACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

322

Amino Acids

34.14

Weight (kDa)

10.32

Isoelectric Point (pI)

66.43

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006877)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G22190
fragaria_vesca	FvH4_3g01370
malus_domestica	MD05G1352700.v1.1 MD10G1327300.v1.1
prunus_persica	Prupe.4G014700_v2.0.a1
pyrus_communis	pycom05g31990 pycom10g27680
rosa_chinensis	RchiOBHm_Chr5g0001991
rosa_laevigata	RLG00000019620 RLG00000030987
rosa_multiflora	Rmu_co8161534.1_g000001 Rmu_sc0000279.1_g000042 Rmu_sc0000737.1_g000017 Rmu_sc0001248.1_g000004 Rmu_sc0002451.1_g000040 Rmu_sc0003473.1_g000004 Rmu_sc0022192.1_g000001 Rmu_sc0023655.1_g000001
rosa_roxburghii	Rroxscaffold_1G00074360 Rroxscaffold_4G00295310
rosa_rugosa	Rorug04G0394200
rosa_samantha	Rh5AG015400 Rh5BG019000 Rh5CG016700 Rh5DG017300
rosa_wichuraiana	Rw5G001510

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	819
Acc16I	TGCGCA	1 cut(s)	938
AccB1I	GGYRCC	1 cut(s)	869
AccBSI	CCGCTC	2 cut(s)	358, 366
AccI	GTMKAC	2 cut(s)	147, 548
AccII	CGCG	3 cut(s)	211, 430, 509
AccIII	TCCGGA	1 cut(s)	238
AclWI	GGATC	1 cut(s)	432
AcoI	YGGCCR	2 cut(s)	419, 560
AcsI	RAATTY	1 cut(s)	74
AcyI	GRCGYC	3 cut(s)	153, 816, 870
AfaI	GTAC	2 cut(s)	457, 962
AfiI	CCNNNNNNNGG	1 cut(s)	578
AflIII	ACRYGT	1 cut(s)	309
AgsI	TTSAA	4 cut(s)	22, 316, 757, 763
AjnI	CCWGG	1 cut(s)	258
AjuI	GAANNNNNNNTTGG	2 cut(s)	458, 490
AluBI	AGCT	7 cut(s)	66, 139, 275, 389, 393, 403, 473
AluI	AGCT	7 cut(s)	66, 139, 275, 389, 393, 403, 473
Alw21I	GWGCWC	3 cut(s)	141, 277, 518
Alw26I	GTCTC	1 cut(s)	130
AlwI	GGATC	1 cut(s)	432
Ama87I	CYCGRG	1 cut(s)	517
Aor13HI	TCCGGA	1 cut(s)	238
AoxI	GGCC	2 cut(s)	419, 560
ApeKI	GCWGC	5 cut(s)	91, 377, 603, 905, 939
ApoI	RAATTY	1 cut(s)	74
AspLEI	GCGC	6 cut(s)	509, 511, 677, 691, 872, 939
AspS9I	GGNCC	3 cut(s)	241, 489, 586
AsuC2I	CCSGG	6 cut(s)	221, 445, 486, 493, 573, 608
AsuHPI	GGTGA	2 cut(s)	347, 511
AsuII	TTCGAA	1 cut(s)	293
AsuNHI	GCTAGC	1 cut(s)	389
AvaI	CYCGRG	1 cut(s)	517
AvaII	GGWCC	3 cut(s)	241, 489, 586
BanI	GGYRCC	1 cut(s)	869
BanII	GRGCYC	3 cut(s)	141, 277, 484
BbsI	GAAGAC	2 cut(s)	12, 46
Bbv12I	GWGCWC	3 cut(s)	141, 277, 518
BbvI	GCAGC	5 cut(s)	78, 389, 615, 892, 951
BceAI	ACGGC	4 cut(s)	166, 303, 406, 496
BcgI	CGANNNNNNTGC	2 cut(s)	644, 678
BciT130I	CCWGG	1 cut(s)	260
BcnI	CCSGG	6 cut(s)	221, 445, 486, 493, 573, 608
BcoDI	GTCTC	1 cut(s)	130
BfaI	CTAG	2 cut(s)	390, 747
BfmI	CTRYAG	2 cut(s)	92, 831
BfoI	RGCGCY	3 cut(s)	678, 692, 873
BglI	GCCNNNNNGGC	1 cut(s)	263
Bme1390I	CCNGG	7 cut(s)	221, 260, 445, 486, 493, 573, 608
Bme18I	GGWCC	3 cut(s)	241, 489, 586
BmeT110I	CYCGRG	1 cut(s)	517
BmgT120I	GGNCC	3 cut(s)	241, 489, 586
BmiI	GGNNCC	7 cut(s)	243, 483, 490, 491, 587, 631, 871
BmrFI	CCNGG	7 cut(s)	221, 260, 445, 486, 493, 573, 608
BmtI	GCTAGC	1 cut(s)	393
BpiI	GAAGAC	2 cut(s)	12, 46
BpmI	CTGGAG	2 cut(s)	46, 106
Bpu14I	TTCGAA	1 cut(s)	293
BpuMI	CCSGG	6 cut(s)	221, 445, 486, 493, 573, 608
BsaHI	GRCGYC	3 cut(s)	153, 816, 870
BsaJI	CCNNGG	4 cut(s)	258, 485, 841, 865
BsaWI	WCCGGW	3 cut(s)	238, 269, 635
BsaXI	ACNNNNNCTCC	2 cut(s)	259, 289
Bsc4I	CCNNNNNNNGG	1 cut(s)	578
Bse118I	RCCGGY	1 cut(s)	562
BseAI	TCCGGA	1 cut(s)	238
BseBI	CCWGG	1 cut(s)	260
BseDI	CCNNGG	4 cut(s)	258, 485, 841, 865
BseLI	CCNNNNNNNGG	1 cut(s)	578
BsePI	GCGCGC	1 cut(s)	507
BseRI	GAGGAG	2 cut(s)	239, 535
BseXI	GCAGC	5 cut(s)	78, 389, 615, 892, 951
BseYI	CCCAGC	1 cut(s)	908
Bsh1236I	CGCG	3 cut(s)	211, 430, 509
Bsh1285I	CGRYCG	1 cut(s)	270
BshFI	GGCC	2 cut(s)	421, 562
BshNI	GGYRCC	1 cut(s)	869
BsiEI	CGRYCG	1 cut(s)	270
BsiHKAI	GWGCWC	3 cut(s)	141, 277, 518
BsiHKCI	CYCGRG	1 cut(s)	517
BslFI	GGGAC	3 cut(s)	161, 320, 502
BslI	CCNNNNNNNGG	1 cut(s)	578
BsmAI	GTCTC	1 cut(s)	130
BsmBI	CGTCTC	1 cut(s)	130
BsmFI	GGGAC	3 cut(s)	161, 320, 502
BsmI	GAATGC	1 cut(s)	454
BsnI	GGCC	2 cut(s)	421, 562
BsoBI	CYCGRG	1 cut(s)	517
Bsp119I	TTCGAA	1 cut(s)	293
Bsp1286I	GDGCHC	4 cut(s)	141, 277, 484, 518
Bsp13I	TCCGGA	1 cut(s)	238
Bsp143I	GATC	2 cut(s)	118, 437
BspANI	GGCC	2 cut(s)	421, 562
BspEI	TCCGGA	1 cut(s)	238
BspFNI	CGCG	3 cut(s)	211, 430, 509
BspHI	TCATGA	1 cut(s)	819
BspLI	GGNNCC	7 cut(s)	243, 483, 490, 491, 587, 631, 871
BspMAI	CTGCAG	1 cut(s)	96
BspOI	GCTAGC	1 cut(s)	393
BspPI	GGATC	1 cut(s)	432
BspQI	GCTCTTC	3 cut(s)	146, 317, 356
BspT104I	TTCGAA	1 cut(s)	293
BspT107I	GGYRCC	1 cut(s)	869
BsrBI	CCGCTC	2 cut(s)	358, 366
BsrFI	RCCGGY	1 cut(s)	562
BssAI	RCCGGY	1 cut(s)	562
BssECI	CCNNGG	4 cut(s)	258, 485, 841, 865
BssHII	GCGCGC	1 cut(s)	507
BssMI	GATC	2 cut(s)	118, 437
BssNI	GRCGYC	3 cut(s)	153, 816, 870
Bst2UI	CCWGG	1 cut(s)	260
Bst4CI	ACNGT	3 cut(s)	718, 866, 887
Bst6I	CTCTTC	3 cut(s)	146, 317, 356
BstACI	GRCGYC	3 cut(s)	153, 816, 870
BstBI	TTCGAA	1 cut(s)	293
BstC8I	GCNNGC	5 cut(s)	68, 110, 391, 509, 564
BstDEI	CTNAG	1 cut(s)	951
BstDSI	CCRYGG	2 cut(s)	841, 865
BstFNI	CGCG	3 cut(s)	211, 430, 509
BstH2I	RGCGCY	3 cut(s)	678, 692, 873
BstHHI	GCGC	6 cut(s)	509, 511, 677, 691, 872, 939
BstKTI	GATC	2 cut(s)	121, 440
BstMAI	GTCTC	1 cut(s)	130
BstMBI	GATC	2 cut(s)	118, 437
BstMCI	CGRYCG	1 cut(s)	270
BstNI	CCWGG	1 cut(s)	260
BstNSI	RCATGY	1 cut(s)	313
BstSCI	CCNGG	7 cut(s)	219, 258, 443, 484, 491, 571, 606
BstSFI	CTRYAG	2 cut(s)	92, 831
BstUI	CGCG	3 cut(s)	211, 430, 509
BstV1I	GCAGC	5 cut(s)	78, 389, 615, 892, 951
BstV2I	GAAGAC	2 cut(s)	12, 46
BstX2I	RGATCY	1 cut(s)	437
BstYI	RGATCY	1 cut(s)	437
BsuRI	GGCC	2 cut(s)	421, 562
BtgI	CCRYGG	2 cut(s)	841, 865
BtgZI	GCGATG	1 cut(s)	296
Cac8I	GCNNGC	5 cut(s)	68, 110, 391, 509, 564
CciI	TCATGA	1 cut(s)	819
CfoI	GCGC	6 cut(s)	509, 511, 677, 691, 872, 939
Cfr10I	RCCGGY	1 cut(s)	562
Cfr13I	GGNCC	3 cut(s)	241, 489, 586
CseI	GACGC	1 cut(s)	142
Csp6I	GTAC	2 cut(s)	456, 961
CspCI	CAANNNNNGTGG	2 cut(s)	847, 882
CviAII	CATG	2 cut(s)	310, 820
CviQI	GTAC	2 cut(s)	456, 961
DdeI	CTNAG	1 cut(s)	951
DinI	GGCGCC	1 cut(s)	871
DpnI	GATC	2 cut(s)	120, 439
DpnII	GATC	2 cut(s)	118, 437
EaeI	YGGCCR	2 cut(s)	419, 560
Eam1104I	CTCTTC	3 cut(s)	146, 317, 356
EarI	CTCTTC	3 cut(s)	146, 317, 356
EciI	GGCGGA	6 cut(s)	118, 158, 387, 413, 430, 744
Ecl136II	GAGCTC	2 cut(s)	139, 275
Eco24I	GRGCYC	3 cut(s)	141, 277, 484
Eco47I	GGWCC	3 cut(s)	241, 489, 586
Eco53kI	GAGCTC	2 cut(s)	139, 275
Eco88I	CYCGRG	1 cut(s)	517
EcoICRI	GAGCTC	2 cut(s)	139, 275
EcoO109I	RGGNCCY	1 cut(s)	489
EcoRI	GAATTC	1 cut(s)	74
EcoRII	CCWGG	1 cut(s)	258
EcoT38I	GRGCYC	3 cut(s)	141, 277, 484
EgeI	GGCGCC	1 cut(s)	871
EheI	GGCGCC	1 cut(s)	871
Esp3I	CGTCTC	1 cut(s)	130
FaeI	CATG	2 cut(s)	313, 823
FaiI	YATR	4 cut(s)	311, 410, 786, 821
FaqI	GGGAC	3 cut(s)	161, 320, 502
FatI	CATG	2 cut(s)	309, 819
FauI	CCCGC	5 cut(s)	117, 187, 201, 216, 575
FblI	GTMKAC	2 cut(s)	147, 548
FriOI	GRGCYC	3 cut(s)	141, 277, 484
FspBI	CTAG	2 cut(s)	390, 747
FspI	TGCGCA	1 cut(s)	938
GlaI	GCGC	6 cut(s)	508, 510, 676, 690, 871, 938
GsaI	CCCAGC	1 cut(s)	912
GsuI	CTGGAG	2 cut(s)	46, 106
HaeII	RGCGCY	3 cut(s)	678, 692, 873
HaeIII	GGCC	2 cut(s)	421, 562
HgaI	GACGC	1 cut(s)	142
HhaI	GCGC	6 cut(s)	509, 511, 677, 691, 872, 939
Hin1I	GRCGYC	3 cut(s)	153, 816, 870
Hin1II	CATG	2 cut(s)	313, 823
Hin6I	GCGC	6 cut(s)	507, 509, 675, 689, 870, 937
HinP1I	GCGC	6 cut(s)	507, 509, 675, 689, 870, 937
HincII	GTYRAC	2 cut(s)	148, 549
HindII	GTYRAC	2 cut(s)	148, 549
HinfI	GANTC	6 cut(s)	18, 59, 539, 568, 750, 837
HphI	GGTGA	2 cut(s)	347, 511
Hpy166II	GTNNAC	5 cut(s)	148, 502, 549, 589, 961
Hpy188I	TCNGA	1 cut(s)	600
Hpy188III	TCNNGA	5 cut(s)	85, 239, 316, 754, 820
Hpy8I	GTNNAC	5 cut(s)	148, 502, 549, 589, 961
Hpy99I	CGWCG	4 cut(s)	48, 149, 152, 553
HpyAV	CCTTC	4 cut(s)	334, 346, 490, 949
HpyCH4III	ACNGT	3 cut(s)	718, 866, 887
HpyCH4IV	ACGT	1 cut(s)	816
HpyCH4V	TGCA	2 cut(s)	94, 740
HpyF3I	CTNAG	1 cut(s)	951
HpySE526I	ACGT	1 cut(s)	816
Hsp92I	GRCGYC	3 cut(s)	153, 816, 870
Hsp92II	CATG	2 cut(s)	313, 823
HspAI	GCGC	6 cut(s)	507, 509, 675, 689, 870, 937
KasI	GGCGCC	1 cut(s)	869
KflI	GGGWCCC	1 cut(s)	489
Kpn2I	TCCGGA	1 cut(s)	238
KroI	GCCGGC	1 cut(s)	562
KroNI	GCCGGC	1 cut(s)	564
Kzo9I	GATC	2 cut(s)	118, 437
LguI	GCTCTTC	3 cut(s)	146, 317, 356
Lsp1109I	GCAGC	5 cut(s)	78, 389, 615, 892, 951
MaeI	CTAG	2 cut(s)	390, 747
MaeII	ACGT	1 cut(s)	816
MalI	GATC	2 cut(s)	120, 439
MbiI	CCGCTC	2 cut(s)	358, 366
MboI	GATC	2 cut(s)	118, 437
MboII	GAAGA	8 cut(s)	17, 51, 133, 331, 334, 358, 361, 373
MflI	RGATCY	1 cut(s)	437
MhlI	GDGCHC	4 cut(s)	141, 277, 484, 518
MluCI	AATT	1 cut(s)	74
Mly113I	GGCGCC	1 cut(s)	870
MlyI	GAGTC	5 cut(s)	53, 548, 577, 759, 846
MmeI	TCCRAC	2 cut(s)	578, 794
MroI	TCCGGA	1 cut(s)	238
MroNI	GCCGGC	1 cut(s)	562
MseI	TTAA	1 cut(s)	930
MspA1I	CMGCKG	1 cut(s)	881
MspR9I	CCNGG	7 cut(s)	221, 260, 445, 486, 493, 573, 608
Mva1269I	GAATGC	1 cut(s)	454
MvaI	CCWGG	1 cut(s)	260
MvnI	CGCG	3 cut(s)	211, 430, 509
NaeI	GCCGGC	1 cut(s)	564
NarI	GGCGCC	1 cut(s)	870
NciI	CCSGG	6 cut(s)	221, 445, 486, 493, 573, 608
NdeII	GATC	2 cut(s)	118, 437
NgoMIV	GCCGGC	1 cut(s)	562
NheI	GCTAGC	1 cut(s)	389
NlaIII	CATG	2 cut(s)	313, 823
NlaIV	GGNNCC	7 cut(s)	243, 483, 490, 491, 587, 631, 871
NmeAIII	GCCGAG	1 cut(s)	374
NsbI	TGCGCA	1 cut(s)	938
NspI	RCATGY	1 cut(s)	313
NspV	TTCGAA	1 cut(s)	293
PaeR7I	CTCGAG	1 cut(s)	517
PagI	TCATGA	1 cut(s)	819
PauI	GCGCGC	1 cut(s)	507
PciI	ACATGT	1 cut(s)	309
PciSI	GCTCTTC	3 cut(s)	146, 317, 356
PcsI	WCGNNNNNNNCGW	2 cut(s)	129, 150
PctI	GAATGC	1 cut(s)	454
PdiI	GCCGGC	1 cut(s)	564
PfeI	GAWTC	1 cut(s)	18
PflFI	GACNNNGTC	1 cut(s)	152
PleI	GAGTC	5 cut(s)	53, 547, 576, 758, 845
PluTI	GGCGCC	1 cut(s)	873
PpsI	GAGTC	5 cut(s)	53, 547, 576, 758, 845
PpuMI	RGGWCCY	1 cut(s)	489
PscI	ACATGT	1 cut(s)	309
Psp124BI	GAGCTC	2 cut(s)	141, 277
Psp5II	RGGWCCY	1 cut(s)	489
Psp6I	CCWGG	1 cut(s)	258
PspFI	CCCAGC	1 cut(s)	908
PspGI	CCWGG	1 cut(s)	258
PspN4I	GGNNCC	7 cut(s)	243, 483, 490, 491, 587, 631, 871
PspPI	GGNCC	3 cut(s)	241, 489, 586
PspPPI	RGGWCCY	1 cut(s)	489
PspXI	VCTCGAGB	1 cut(s)	517
PstI	CTGCAG	1 cut(s)	96
PsuI	RGATCY	1 cut(s)	437
PsyI	GACNNNGTC	1 cut(s)	152
PteI	GCGCGC	1 cut(s)	507
RsaI	GTAC	2 cut(s)	457, 962
RsaNI	GTAC	2 cut(s)	456, 961
SacI	GAGCTC	2 cut(s)	141, 277
SalI	GTCGAC	2 cut(s)	146, 547
SapI	GCTCTTC	3 cut(s)	146, 317, 356
SaqAI	TTAA	1 cut(s)	930
Sau3AI	GATC	2 cut(s)	118, 437
Sau96I	GGNCC	3 cut(s)	241, 489, 586
SchI	GAGTC	5 cut(s)	53, 548, 577, 759, 846
ScrFI	CCNGG	7 cut(s)	221, 260, 445, 486, 493, 573, 608
SduI	GDGCHC	4 cut(s)	141, 277, 484, 518
SfcI	CTRYAG	2 cut(s)	92, 831
SfoI	GGCGCC	1 cut(s)	871
Sfr274I	CTCGAG	1 cut(s)	517
SfuI	TTCGAA	1 cut(s)	293
SgrDI	CGTCGACG	1 cut(s)	146
SinI	GGWCC	3 cut(s)	241, 489, 586
SlaI	CTCGAG	1 cut(s)	517
SmlI	CTYRAG	1 cut(s)	517
SmoI	CTYRAG	1 cut(s)	517
Sse9I	AATT	1 cut(s)	74
SspDI	GGCGCC	1 cut(s)	869
SspMI	CTAG	2 cut(s)	390, 747
SstI	GAGCTC	2 cut(s)	141, 277
StyD4I	CCNGG	7 cut(s)	219, 258, 443, 484, 491, 571, 606
TaaI	ACNGT	3 cut(s)	718, 866, 887
TaiI	ACGT	1 cut(s)	819
TaqI	TCGA	5 cut(s)	78, 147, 293, 518, 548
TasI	AATT	1 cut(s)	74
TatI	WGTACW	1 cut(s)	960
TauI	GCSGC	6 cut(s)	369, 372, 383, 875, 878, 881
TfiI	GAWTC	1 cut(s)	18
Tru1I	TTAA	1 cut(s)	930
Tru9I	TTAA	1 cut(s)	930
TseI	GCWGC	5 cut(s)	91, 377, 603, 905, 939
TspDTI	ATGAA	1 cut(s)	836
TspGWI	ACGGA	1 cut(s)	830
Tth111I	GACNNNGTC	1 cut(s)	152
VpaK11BI	GGWCC	3 cut(s)	241, 489, 586
XapI	RAATTY	1 cut(s)	74
XceI	RCATGY	1 cut(s)	313
XhoI	CTCGAG	1 cut(s)	517
XmiI	GTMKAC	2 cut(s)	147, 548
XspI	CTAG	2 cut(s)	390, 747
ZraI	GACGTC	1 cut(s)	817

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.