Rmu_sc0003473.1_g000004

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0003473.1
OG0006877
Physical Location & Seq
Forward (+)
10165 .. 13215
3051 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0003473.1_g000004.1.cds

Sequence Viewer

Length: 801 bp
atgcaattacatgcggtggacgcgcatctgcacccgcaaatgctcgtccggtccaacgccgattaccacttaaagcagtcagaccccactggcccaagcttttccaccttgaaagcctacaggtatccgacagtcagaccttgtgatgacccagaatctctctcaccggaattctacttctggaggctccaaaatccgtcttgcctccaacctgatctcacctcttctgataagctattcgttgatggtgtcattctccctctccgccttgtccccgcccacgagaatccgcttgacccgaacctgggaactaactcggaagagatttctactccggacccagaaccagaagcccatgtgtcaactgcagctccggtgctaactgcatcgaaatggtggagggacatgttcaagaagaagagtgagggtagtgagaaagagaagggaaagggagaagaagaaggatcggaagataagcggagcagcagccaccggaacgagctcggtggagctgaacatcaatctgtggctgttttcgcagatcagatccgctggaaatgcttgtacccaacccaaattaggggctccgggagcctggaaggtgaacaacacgccgtgttcaaagagcaactcgacggttgtagaagtgatgtaatgaatagtgctatagaaatcggtggcagtagtggtagcaacaacaacaaccgtggcggtgcggcggtgccggagatagtaacattgctggggctgctagtaatctttttaataatcgagttttggattcctaagaaggtgtattaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

266

Amino Acids

29.51

Weight (kDa)

5.4

Isoelectric Point (pI)

51.96

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 721
AccII CGCG 1 cut(s) 23
AccIII TCCGGA 1 cut(s) 334
AclWI GGATC 2 cut(s) 472, 541
AcsI RAATTY 1 cut(s) 170
AdeI CACNNNGTG 1 cut(s) 616
AfaI GTAC 1 cut(s) 566
AfiI CCNNNNNNNGG 4 cut(s) 304, 305, 579, 580
AflIII ACRYGT 1 cut(s) 405
AgsI TTSAA 3 cut(s) 112, 412, 622
AjnI CCWGG 2 cut(s) 303, 594
AluBI AGCT 5 cut(s) 99, 235, 371, 502, 512
AluI AGCT 5 cut(s) 99, 235, 371, 502, 512
Alw21I GWGCWC 1 cut(s) 504
AlwI GGATC 2 cut(s) 472, 541
Aor13HI TCCGGA 1 cut(s) 334
AoxI GGCC 1 cut(s) 91
ApeKI GCWGC 4 cut(s) 368, 483, 486, 748
ApoI RAATTY 1 cut(s) 170
AspLEI GCGC 1 cut(s) 25
AspS9I GGNCC 3 cut(s) 51, 92, 337
AsuC2I CCSGG 1 cut(s) 589
AsuHPI GGTGA 3 cut(s) 156, 211, 614
AvaII GGWCC 2 cut(s) 51, 337
BanI GGYRCC 1 cut(s) 721
BanII GRGCYC 2 cut(s) 504, 587
BauI CACGAG 1 cut(s) 281
Bbv12I GWGCWC 1 cut(s) 504
BbvI GCAGC 4 cut(s) 380, 495, 498, 735
BccI CCATC 1 cut(s) 239
BceAI ACGGC 1 cut(s) 599
BciT130I CCWGG 2 cut(s) 305, 596
BciVI GTATCC 1 cut(s) 135
BcnI CCSGG 1 cut(s) 589
BfaI CTAG 1 cut(s) 752
BfmI CTRYAG 3 cut(s) 118, 366, 666
BfuI GTATCC 1 cut(s) 135
BisI GCNGC 5 cut(s) 369, 484, 487, 717, 749
BlsI GCNGC 5 cut(s) 370, 485, 488, 718, 750
Bme1390I CCNGG 3 cut(s) 305, 589, 596
Bme18I GGWCC 2 cut(s) 51, 337
BmgT120I GGNCC 3 cut(s) 51, 92, 337
BmiI GGNNCC 5 cut(s) 188, 339, 586, 593, 723
BmrFI CCNGG 3 cut(s) 305, 589, 596
BmsI GCATC 2 cut(s) 34, 395
BpmI CTGGAG 1 cut(s) 202
BpuMI CCSGG 1 cut(s) 589
BsaJI CCNNGG 2 cut(s) 304, 706
BsaWI WCCGGW 5 cut(s) 48, 166, 334, 373, 492
BsaXI ACNNNNNCTCC 2 cut(s) 355, 385
Bsc4I CCNNNNNNNGG 4 cut(s) 304, 305, 579, 580
Bse1I ACTGG 1 cut(s) 94
Bse3DI GCAATG 1 cut(s) 737
BseAI TCCGGA 1 cut(s) 334
BseBI CCWGG 2 cut(s) 305, 596
BseDI CCNNGG 2 cut(s) 304, 706
BseLI CCNNNNNNNGG 4 cut(s) 304, 305, 579, 580
BseMI GCAATG 1 cut(s) 737
BseNI ACTGG 1 cut(s) 94
BseXI GCAGC 4 cut(s) 380, 495, 498, 735
BseYI CCCAGC 1 cut(s) 742
BsgI GTGCAG 1 cut(s) 14
Bsh1236I CGCG 1 cut(s) 23
BshFI GGCC 1 cut(s) 93
BshNI GGYRCC 1 cut(s) 721
BsiHKAI GWGCWC 1 cut(s) 504
BsiSI CCGG 7 cut(s) 49, 167, 335, 374, 493, 588, 725
BslFI GGGAC 2 cut(s) 257, 416
BslI CCNNNNNNNGG 4 cut(s) 304, 305, 579, 580
BsmFI GGGAC 2 cut(s) 257, 416
BsnI GGCC 1 cut(s) 93
Bsp1286I GDGCHC 2 cut(s) 504, 587
Bsp13I TCCGGA 1 cut(s) 334
Bsp143I GATC 4 cut(s) 214, 464, 541, 546
BspANI GGCC 1 cut(s) 93
BspEI TCCGGA 1 cut(s) 334
BspFNI CGCG 1 cut(s) 23
BspLI GGNNCC 5 cut(s) 188, 339, 586, 593, 723
BspMAI CTGCAG 1 cut(s) 370
BspPI GGATC 2 cut(s) 472, 541
BspT107I GGYRCC 1 cut(s) 721
BsrDI GCAATG 1 cut(s) 737
BsrI ACTGG 1 cut(s) 94
BssECI CCNNGG 2 cut(s) 304, 706
BssMI GATC 4 cut(s) 214, 464, 541, 546
BssSI CACGAG 1 cut(s) 281
Bst2BI CACGAG 1 cut(s) 281
Bst2UI CCWGG 2 cut(s) 305, 596
Bst4CI ACNGT 3 cut(s) 133, 638, 707
Bst6I CTCTTC 3 cut(s) 229, 315, 413
BstDEI CTNAG 1 cut(s) 786
BstDSI CCRYGG 1 cut(s) 706
BstFNI CGCG 1 cut(s) 23
BstHHI GCGC 1 cut(s) 25
BstKTI GATC 4 cut(s) 217, 467, 544, 549
BstMBI GATC 4 cut(s) 214, 464, 541, 546
BstMWI GCNNNNNNNGC 5 cut(s) 20, 536, 558, 591, 748
BstNI CCWGG 2 cut(s) 305, 596
BstNSI RCATGY 2 cut(s) 14, 409
BstSCI CCNGG 3 cut(s) 303, 587, 594
BstSFI CTRYAG 3 cut(s) 118, 366, 666
BstUI CGCG 1 cut(s) 23
BstV1I GCAGC 4 cut(s) 380, 495, 498, 735
BstX2I RGATCY 1 cut(s) 546
BstYI RGATCY 1 cut(s) 546
BsuI GTATCC 1 cut(s) 135
BsuRI GGCC 1 cut(s) 93
BtgI CCRYGG 1 cut(s) 706
BtsIMutI CAGTG 1 cut(s) 87
CfoI GCGC 1 cut(s) 25
Cfr13I GGNCC 3 cut(s) 51, 92, 337
CseI GACGC 1 cut(s) 29
Csp6I GTAC 1 cut(s) 565
CspCI CAANNNNNGTGG 2 cut(s) 688, 723
CviAII CATG 3 cut(s) 11, 356, 406
CviQI GTAC 1 cut(s) 565
DdeI CTNAG 1 cut(s) 786
DpnI GATC 4 cut(s) 216, 466, 543, 548
DpnII GATC 4 cut(s) 214, 464, 541, 546
DraIII CACNNNGTG 1 cut(s) 616
Eam1104I CTCTTC 3 cut(s) 229, 315, 413
EarI CTCTTC 3 cut(s) 229, 315, 413
EciI GGCGGA 1 cut(s) 254
Ecl136II GAGCTC 1 cut(s) 502
Eco24I GRGCYC 2 cut(s) 504, 587
Eco47I GGWCC 2 cut(s) 51, 337
Eco53kI GAGCTC 1 cut(s) 502
EcoICRI GAGCTC 1 cut(s) 502
EcoRI GAATTC 1 cut(s) 170
EcoRII CCWGG 2 cut(s) 303, 594
EcoT38I GRGCYC 2 cut(s) 504, 587
FaeI CATG 3 cut(s) 14, 359, 409
FaiI YATR 4 cut(s) 12, 357, 407, 668
FaqI GGGAC 2 cut(s) 257, 416
FatI CATG 3 cut(s) 10, 355, 405
FauI CCCGC 2 cut(s) 42, 283
Fnu4HI GCNGC 5 cut(s) 369, 484, 487, 717, 749
FriOI GRGCYC 2 cut(s) 504, 587
Fsp4HI GCNGC 5 cut(s) 369, 484, 487, 717, 749
FspBI CTAG 1 cut(s) 752
GlaI GCGC 1 cut(s) 24
GluI GCNGC 5 cut(s) 369, 484, 487, 717, 749
GsaI CCCAGC 1 cut(s) 746
GsuI CTGGAG 1 cut(s) 202
HaeIII GGCC 1 cut(s) 93
HapII CCGG 7 cut(s) 49, 167, 335, 374, 493, 588, 725
HgaI GACGC 1 cut(s) 29
HhaI GCGC 1 cut(s) 25
Hin1II CATG 3 cut(s) 14, 359, 409
Hin6I GCGC 1 cut(s) 23
HinP1I GCGC 1 cut(s) 23
HincII GTYRAC 1 cut(s) 363
HindII GTYRAC 1 cut(s) 363
HindIII AAGCTT 1 cut(s) 97
HinfI GANTC 3 cut(s) 155, 286, 781
HpaII CCGG 7 cut(s) 49, 167, 335, 374, 493, 588, 725
HphI GGTGA 3 cut(s) 156, 211, 614
Hpy166II GTNNAC 3 cut(s) 19, 363, 605
Hpy188I TCNGA 7 cut(s) 82, 129, 137, 229, 319, 469, 546
Hpy188III TCNNGA 3 cut(s) 181, 335, 412
Hpy8I GTNNAC 3 cut(s) 19, 363, 605
Hpy99I CGWCG 1 cut(s) 638
HpyAV CCTTC 4 cut(s) 436, 455, 593, 784
HpyCH4III ACNGT 3 cut(s) 133, 638, 707
HpyCH4V TGCA 4 cut(s) 4, 31, 368, 386
HpyF10VI GCNNNNNNNGC 5 cut(s) 20, 536, 558, 591, 748
HpyF3I CTNAG 1 cut(s) 786
Hsp92II CATG 3 cut(s) 14, 359, 409
HspAI GCGC 1 cut(s) 23
Kpn2I TCCGGA 1 cut(s) 334
Kzo9I GATC 4 cut(s) 214, 464, 541, 546
LmnI GCTCC 6 cut(s) 192, 376, 480, 509, 590, 591
Lsp1109I GCAGC 4 cut(s) 380, 495, 498, 735
LweI GCATC 2 cut(s) 34, 395
MaeI CTAG 1 cut(s) 752
MaeIII GTNAC 1 cut(s) 733
MalI GATC 4 cut(s) 216, 466, 543, 548
MboI GATC 4 cut(s) 214, 464, 541, 546
MboII GAAGA 7 cut(s) 216, 332, 427, 430, 467, 470, 482
MflI RGATCY 1 cut(s) 546
MhlI GDGCHC 2 cut(s) 504, 587
MluCI AATT 3 cut(s) 5, 170, 576
MmeI TCCRAC 3 cut(s) 78, 152, 232
MnlI CCTC 6 cut(s) 177, 215, 232, 270, 393, 418
MroI TCCGGA 1 cut(s) 334
MseI TTAA 3 cut(s) 71, 764, 799
MslI CAYNNNNRTG 1 cut(s) 391
MspA1I CMGCKG 1 cut(s) 552
MspI CCGG 7 cut(s) 49, 167, 335, 374, 493, 588, 725
MspR9I CCNGG 3 cut(s) 305, 589, 596
MvaI CCWGG 2 cut(s) 305, 596
MvnI CGCG 1 cut(s) 23
MwoI GCNNNNNNNGC 5 cut(s) 20, 536, 558, 591, 748
NciI CCSGG 1 cut(s) 589
NdeII GATC 4 cut(s) 214, 464, 541, 546
NlaIII CATG 3 cut(s) 14, 359, 409
NlaIV GGNNCC 5 cut(s) 188, 339, 586, 593, 723
NspI RCATGY 2 cut(s) 14, 409
PciI ACATGT 1 cut(s) 405
PfeI GAWTC 3 cut(s) 155, 286, 781
PfoI TCCNGGA 1 cut(s) 587
PkrI GCNGC 5 cut(s) 370, 485, 488, 718, 750
PscI ACATGT 1 cut(s) 405
Psp124BI GAGCTC 1 cut(s) 504
Psp6I CCWGG 2 cut(s) 303, 594
PspFI CCCAGC 1 cut(s) 742
PspGI CCWGG 2 cut(s) 303, 594
PspN4I GGNNCC 5 cut(s) 188, 339, 586, 593, 723
PspPI GGNCC 3 cut(s) 51, 92, 337
PstI CTGCAG 1 cut(s) 370
PsuI RGATCY 1 cut(s) 546
RsaI GTAC 1 cut(s) 566
RsaNI GTAC 1 cut(s) 565
RseI CAYNNNNRTG 1 cut(s) 391
SacI GAGCTC 1 cut(s) 504
SaqAI TTAA 3 cut(s) 71, 764, 799
SatI GCNGC 5 cut(s) 369, 484, 487, 717, 749
Sau3AI GATC 4 cut(s) 214, 464, 541, 546
Sau96I GGNCC 3 cut(s) 51, 92, 337
ScrFI CCNGG 3 cut(s) 305, 589, 596
SduI GDGCHC 2 cut(s) 504, 587
SfaNI GCATC 2 cut(s) 34, 395
SfcI CTRYAG 3 cut(s) 118, 366, 666
SinI GGWCC 2 cut(s) 51, 337
SmiMI CAYNNNNRTG 1 cut(s) 391
Sse9I AATT 3 cut(s) 5, 170, 576
SspMI CTAG 1 cut(s) 752
SstI GAGCTC 1 cut(s) 504
StyD4I CCNGG 3 cut(s) 303, 587, 594
TaaI ACNGT 3 cut(s) 133, 638, 707
TaqI TCGA 3 cut(s) 389, 633, 771
TasI AATT 3 cut(s) 5, 170, 576
TauI GCSGC 1 cut(s) 719
TfiI GAWTC 3 cut(s) 155, 286, 781
Tru1I TTAA 3 cut(s) 71, 764, 799
Tru9I TTAA 3 cut(s) 71, 764, 799
TscAI CASTG 1 cut(s) 94
TseI GCWGC 4 cut(s) 368, 483, 486, 748
TspDTI ATGAA 1 cut(s) 671
TspGWI ACGGA 1 cut(s) 186
TspRI CASTG 1 cut(s) 94
VpaK11BI GGWCC 2 cut(s) 51, 337
XapI RAATTY 1 cut(s) 170
XceI RCATGY 2 cut(s) 14, 409
XspI CTAG 1 cut(s) 752
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.