Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000279.1

Orthogroup ID

OG0006877

Physical Location & Seq

Genomic Coordinates Forward (+)

153367 .. 153627

Gene Structure 261 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000279.1_g000042.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 261 bp

ctgctacccaaatcagaagagatttctgctccagacccagaaccagaggccctggtgtcaactgcagctccagtgctgaccgcatcgaagcggtggagggacatgttcaagaagaagagtgagagtagtgagaaagagaaggagaagaagaaggagcggaagaaggagaaccgttttcgcagaccagatccgccagaaatcccaaattcggggctccgggaggtgaacagcgccgtgttcaaggagcatcaatgtacctga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

86

Amino Acids

9.9

Weight (kDa)

9.34

Isoelectric Point (pI)

66.9

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006877)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G22190
fragaria_vesca	FvH4_3g01370
malus_domestica	MD05G1352700.v1.1 MD10G1327300.v1.1
prunus_persica	Prupe.4G014700_v2.0.a1
pyrus_communis	pycom05g31990 pycom10g27680
rosa_chinensis	RchiOBHm_Chr5g0001991
rosa_laevigata	RLG00000019620 RLG00000030987
rosa_multiflora	Rmu_co8161534.1_g000001 Rmu_sc0000279.1_g000042 Rmu_sc0000737.1_g000017 Rmu_sc0001248.1_g000004 Rmu_sc0002451.1_g000040 Rmu_sc0003473.1_g000004 Rmu_sc0022192.1_g000001 Rmu_sc0023655.1_g000001
rosa_roxburghii	Rroxscaffold_1G00074360 Rroxscaffold_4G00295310
rosa_rugosa	Rorug04G0394200
rosa_samantha	Rh5AG015400 Rh5BG019000 Rh5CG016700 Rh5DG017300
rosa_wichuraiana	Rw5G001510

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	157
AciI	CCGC	4 cut(s)	81, 91, 157, 191
AclWI	GGATC	1 cut(s)	182
AcsI	RAATTY	1 cut(s)	205
AfaI	GTAC	1 cut(s)	256
AfiI	CCNNNNNNNGG	2 cut(s)	208, 209
AflIII	ACRYGT	1 cut(s)	102
AgsI	TTSAA	2 cut(s)	109, 241
AjnI	CCWGG	1 cut(s)	51
AluBI	AGCT	1 cut(s)	68
AluI	AGCT	1 cut(s)	68
AlwI	GGATC	1 cut(s)	182
AoxI	GGCC	1 cut(s)	48
ApeKI	GCWGC	1 cut(s)	65
ApoI	RAATTY	1 cut(s)	205
AspLEI	GCGC	1 cut(s)	233
AspS9I	GGNCC	1 cut(s)	49
AsuC2I	CCSGG	1 cut(s)	218
AsuHPI	GGTGA	1 cut(s)	235
BanII	GRGCYC	1 cut(s)	216
BbvI	GCAGC	1 cut(s)	77
BceAI	ACGGC	1 cut(s)	218
BciT130I	CCWGG	1 cut(s)	53
BcnI	CCSGG	1 cut(s)	218
BfmI	CTRYAG	1 cut(s)	63
BfoI	RGCGCY	1 cut(s)	234
BisI	GCNGC	1 cut(s)	66
BlsI	GCNGC	1 cut(s)	67
Bme1390I	CCNGG	2 cut(s)	53, 218
BmgT120I	GGNCC	1 cut(s)	49
BmiI	GGNNCC	1 cut(s)	215
BmrFI	CCNGG	2 cut(s)	53, 218
BmsI	GCATC	2 cut(s)	92, 256
BpmI	CTGGAG	2 cut(s)	15, 54
BpuMI	CCSGG	1 cut(s)	218
BsaJI	CCNNGG	1 cut(s)	51
BsaXI	ACNNNNNCTCC	2 cut(s)	52, 82
Bsc4I	CCNNNNNNNGG	2 cut(s)	208, 209
Bse1I	ACTGG	1 cut(s)	71
BseBI	CCWGG	1 cut(s)	53
BseDI	CCNNGG	1 cut(s)	51
BseLI	CCNNNNNNNGG	2 cut(s)	208, 209
BseNI	ACTGG	1 cut(s)	71
BseXI	GCAGC	1 cut(s)	77
BshFI	GGCC	1 cut(s)	50
BsiSI	CCGG	1 cut(s)	217
BslFI	GGGAC	1 cut(s)	113
BslI	CCNNNNNNNGG	2 cut(s)	208, 209
BsmFI	GGGAC	1 cut(s)	113
BsnI	GGCC	1 cut(s)	50
Bsp1286I	GDGCHC	1 cut(s)	216
Bsp143I	GATC	1 cut(s)	187
BspACI	CCGC	4 cut(s)	81, 91, 157, 191
BspANI	GGCC	1 cut(s)	50
BspLI	GGNNCC	1 cut(s)	215
BspMAI	CTGCAG	1 cut(s)	67
BspPI	GGATC	1 cut(s)	182
BsrBI	CCGCTC	1 cut(s)	157
BsrI	ACTGG	1 cut(s)	71
BssECI	CCNNGG	1 cut(s)	51
BssMI	GATC	1 cut(s)	187
Bst2UI	CCWGG	1 cut(s)	53
Bst4CI	ACNGT	1 cut(s)	173
Bst6I	CTCTTC	2 cut(s)	12, 110
BstH2I	RGCGCY	1 cut(s)	234
BstHHI	GCGC	1 cut(s)	233
BstKTI	GATC	1 cut(s)	190
BstMBI	GATC	1 cut(s)	187
BstNI	CCWGG	1 cut(s)	53
BstNSI	RCATGY	1 cut(s)	106
BstSCI	CCNGG	2 cut(s)	51, 216
BstSFI	CTRYAG	1 cut(s)	63
BstV1I	GCAGC	1 cut(s)	77
BstX2I	RGATCY	1 cut(s)	187
BstYI	RGATCY	1 cut(s)	187
BsuRI	GGCC	1 cut(s)	50
BtsIMutI	CAGTG	1 cut(s)	78
CfoI	GCGC	1 cut(s)	233
Cfr13I	GGNCC	1 cut(s)	49
Csp6I	GTAC	1 cut(s)	255
CviAII	CATG	1 cut(s)	103
CviJI	RGCY	3 cut(s)	50, 68, 214
CviKI_1	RGCY	3 cut(s)	50, 68, 214
CviQI	GTAC	1 cut(s)	255
DpnI	GATC	1 cut(s)	189
DpnII	GATC	1 cut(s)	187
Eam1104I	CTCTTC	2 cut(s)	12, 110
EarI	CTCTTC	2 cut(s)	12, 110
EciI	GGCGGA	1 cut(s)	180
Eco24I	GRGCYC	1 cut(s)	216
EcoO109I	RGGNCCY	1 cut(s)	49
EcoRII	CCWGG	1 cut(s)	51
EcoT38I	GRGCYC	1 cut(s)	216
FaeI	CATG	1 cut(s)	106
FaiI	YATR	1 cut(s)	104
FaqI	GGGAC	1 cut(s)	113
FatI	CATG	1 cut(s)	102
Fnu4HI	GCNGC	1 cut(s)	66
FriOI	GRGCYC	1 cut(s)	216
Fsp4HI	GCNGC	1 cut(s)	66
GlaI	GCGC	1 cut(s)	232
GluI	GCNGC	1 cut(s)	66
GsuI	CTGGAG	2 cut(s)	15, 54
HaeII	RGCGCY	1 cut(s)	234
HaeIII	GGCC	1 cut(s)	50
HapII	CCGG	1 cut(s)	217
HhaI	GCGC	1 cut(s)	233
Hin1II	CATG	1 cut(s)	106
Hin6I	GCGC	1 cut(s)	231
HinP1I	GCGC	1 cut(s)	231
HincII	GTYRAC	1 cut(s)	60
HindII	GTYRAC	1 cut(s)	60
HpaII	CCGG	1 cut(s)	217
HphI	GGTGA	1 cut(s)	235
Hpy166II	GTNNAC	2 cut(s)	60, 226
Hpy188I	TCNGA	1 cut(s)	16
Hpy188III	TCNNGA	2 cut(s)	32, 109
Hpy8I	GTNNAC	2 cut(s)	60, 226
HpyAV	CCTTC	3 cut(s)	133, 145, 157
HpyCH4III	ACNGT	1 cut(s)	173
HpyCH4V	TGCA	1 cut(s)	65
Hsp92II	CATG	1 cut(s)	106
HspAI	GCGC	1 cut(s)	231
Kzo9I	GATC	1 cut(s)	187
LmnI	GCTCC	5 cut(s)	34, 73, 154, 219, 244
LpnPI	CCDG	9 cut(s)	38, 45, 51, 57, 65, 84, 198, 207, 230
Lsp1109I	GCAGC	1 cut(s)	77
LweI	GCATC	2 cut(s)	92, 256
MalI	GATC	1 cut(s)	189
MbiI	CCGCTC	1 cut(s)	157
MboI	GATC	1 cut(s)	187
MboII	GAAGA	6 cut(s)	29, 124, 127, 157, 160, 172
MflI	RGATCY	1 cut(s)	187
MhlI	GDGCHC	1 cut(s)	216
MluCI	AATT	1 cut(s)	205
MnlI	CCTC	3 cut(s)	40, 90, 214
MspI	CCGG	1 cut(s)	217
MspR9I	CCNGG	2 cut(s)	53, 218
MvaI	CCWGG	1 cut(s)	53
NciI	CCSGG	1 cut(s)	218
NdeII	GATC	1 cut(s)	187
NlaIII	CATG	1 cut(s)	106
NlaIV	GGNNCC	1 cut(s)	215
NspI	RCATGY	1 cut(s)	106
PciI	ACATGT	1 cut(s)	102
PfoI	TCCNGGA	1 cut(s)	216
PkrI	GCNGC	1 cut(s)	67
PscI	ACATGT	1 cut(s)	102
Psp6I	CCWGG	1 cut(s)	51
PspGI	CCWGG	1 cut(s)	51
PspN4I	GGNNCC	1 cut(s)	215
PspPI	GGNCC	1 cut(s)	49
PstI	CTGCAG	1 cut(s)	67
PsuI	RGATCY	1 cut(s)	187
RsaI	GTAC	1 cut(s)	256
RsaNI	GTAC	1 cut(s)	255
SatI	GCNGC	1 cut(s)	66
Sau3AI	GATC	1 cut(s)	187
Sau96I	GGNCC	1 cut(s)	49
ScrFI	CCNGG	2 cut(s)	53, 218
SduI	GDGCHC	1 cut(s)	216
SetI	ASST	3 cut(s)	70, 225, 260
SfaNI	GCATC	2 cut(s)	92, 256
SfcI	CTRYAG	1 cut(s)	63
Sse9I	AATT	1 cut(s)	205
SsiI	CCGC	4 cut(s)	81, 91, 157, 191
StyD4I	CCNGG	2 cut(s)	51, 216
TaaI	ACNGT	1 cut(s)	173
TaqI	TCGA	1 cut(s)	86
TasI	AATT	1 cut(s)	205
TscAI	CASTG	1 cut(s)	78
TseI	GCWGC	1 cut(s)	65
TspRI	CASTG	1 cut(s)	78
XapI	RAATTY	1 cut(s)	205
XceI	RCATGY	1 cut(s)	106

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.