Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000737.1

Orthogroup ID

OG0006877

Physical Location & Seq

Genomic Coordinates Reverse (-)

69566 .. 69979

Gene Structure 414 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000737.1_g000017.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 414 bp

atgtcttgcccccaacctgatctcacatctactgatgagctattaatcgatggtgtcattctccctctccgcctcgtccccacccacgagaatcttcttgacccgaacctgcgacccaactcggaagagatttttgctccggacccaaaaccagaagctcaggtgtcaactgcatcgaaacggtggagggacatgttcaagaagaagagtgaaggtaatgagaaagagaaggagaagaagaaggagcaaaagatcggcggagcagcagccaccggaacgagctcggcggagatgaacatcaatctgtggccgttttcgcagatcagatccgctggaaatgcttgtacccaacccaaatttggggctccgggagcccagaaggtgaacagcgcgccgtgttcaaggaccaactag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

137

Amino Acids

14.96

Weight (kDa)

8.46

Isoelectric Point (pI)

58.8

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006877)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G22190
fragaria_vesca	FvH4_3g01370
malus_domestica	MD05G1352700.v1.1 MD10G1327300.v1.1
prunus_persica	Prupe.4G014700_v2.0.a1
pyrus_communis	pycom05g31990 pycom10g27680
rosa_chinensis	RchiOBHm_Chr5g0001991
rosa_laevigata	RLG00000019620 RLG00000030987
rosa_multiflora	Rmu_co8161534.1_g000001 Rmu_sc0000279.1_g000042 Rmu_sc0000737.1_g000017 Rmu_sc0001248.1_g000004 Rmu_sc0002451.1_g000040 Rmu_sc0003473.1_g000004 Rmu_sc0022192.1_g000001 Rmu_sc0023655.1_g000001
rosa_roxburghii	Rroxscaffold_1G00074360 Rroxscaffold_4G00295310
rosa_rugosa	Rorug04G0394200
rosa_samantha	Rh5AG015400 Rh5BG019000 Rh5CG016700 Rh5DG017300
rosa_wichuraiana	Rw5G001510

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	117
AccII	CGCG	1 cut(s)	392
AccIII	TCCGGA	1 cut(s)	139
AciI	CCGC	4 cut(s)	70, 258, 287, 330
AclWI	GGATC	1 cut(s)	321
AcoI	YGGCCR	1 cut(s)	308
AcsI	RAATTY	1 cut(s)	356
AfaI	GTAC	1 cut(s)	346
AfiI	CCNNNNNNNGG	2 cut(s)	359, 360
AflIII	ACRYGT	1 cut(s)	192
AgsI	TTSAA	2 cut(s)	199, 402
AluBI	AGCT	3 cut(s)	40, 158, 282
AluI	AGCT	3 cut(s)	40, 158, 282
Alw21I	GWGCWC	1 cut(s)	284
AlwI	GGATC	1 cut(s)	321
Aor13HI	TCCGGA	1 cut(s)	139
AoxI	GGCC	1 cut(s)	308
ApeKI	GCWGC	2 cut(s)	263, 266
ApoI	RAATTY	1 cut(s)	356
AseI	ATTAAT	1 cut(s)	44
AspLEI	GCGC	2 cut(s)	392, 394
AspS9I	GGNCC	2 cut(s)	142, 405
AsuC2I	CCSGG	1 cut(s)	369
AsuHPI	GGTGA	1 cut(s)	394
AvaII	GGWCC	2 cut(s)	142, 405
BanII	GRGCYC	3 cut(s)	284, 367, 376
BauI	CACGAG	1 cut(s)	86
Bbv12I	GWGCWC	1 cut(s)	284
BbvI	GCAGC	2 cut(s)	275, 278
BccI	CCATC	1 cut(s)	44
BceAI	ACGGC	2 cut(s)	295, 379
BcnI	CCSGG	1 cut(s)	369
BfaI	CTAG	1 cut(s)	412
BfuAI	ACCTGC	1 cut(s)	117
BisI	GCNGC	2 cut(s)	264, 267
BlsI	GCNGC	2 cut(s)	265, 268
Bme1390I	CCNGG	1 cut(s)	369
Bme18I	GGWCC	2 cut(s)	142, 405
BmgT120I	GGNCC	2 cut(s)	142, 405
BmiI	GGNNCC	3 cut(s)	144, 366, 373
BmrFI	CCNGG	1 cut(s)	369
BmsI	GCATC	1 cut(s)	182
Bpu10I	CCTNAGC	1 cut(s)	159
BpuMI	CCSGG	1 cut(s)	369
Bsa29I	ATCGAT	1 cut(s)	48
BsaBI	GATNNNNATC	1 cut(s)	296
BsaWI	WCCGGW	2 cut(s)	139, 272
Bsc4I	CCNNNNNNNGG	2 cut(s)	359, 360
Bse8I	GATNNNNATC	1 cut(s)	296
BseAI	TCCGGA	1 cut(s)	139
BseCI	ATCGAT	1 cut(s)	48
BseJI	GATNNNNATC	1 cut(s)	296
BseLI	CCNNNNNNNGG	2 cut(s)	359, 360
BseMII	CTCAG	1 cut(s)	173
BsePI	GCGCGC	1 cut(s)	390
BseXI	GCAGC	2 cut(s)	275, 278
Bsh1236I	CGCG	1 cut(s)	392
BshFI	GGCC	1 cut(s)	310
BshVI	ATCGAT	1 cut(s)	48
BsiHKAI	GWGCWC	1 cut(s)	284
BsiSI	CCGG	3 cut(s)	140, 273, 368
BslFI	GGGAC	2 cut(s)	62, 203
BslI	CCNNNNNNNGG	2 cut(s)	359, 360
BsmFI	GGGAC	2 cut(s)	62, 203
BsnI	GGCC	1 cut(s)	310
Bsp1286I	GDGCHC	3 cut(s)	284, 367, 376
Bsp13I	TCCGGA	1 cut(s)	139
Bsp143I	GATC	4 cut(s)	19, 252, 321, 326
BspACI	CCGC	4 cut(s)	70, 258, 287, 330
BspANI	GGCC	1 cut(s)	310
BspCNI	CTCAG	1 cut(s)	172
BspDI	ATCGAT	1 cut(s)	48
BspEI	TCCGGA	1 cut(s)	139
BspFNI	CGCG	1 cut(s)	392
BspLI	GGNNCC	3 cut(s)	144, 366, 373
BspMI	ACCTGC	1 cut(s)	117
BspPI	GGATC	1 cut(s)	321
BssHII	GCGCGC	1 cut(s)	390
BssMI	GATC	4 cut(s)	19, 252, 321, 326
BssSI	CACGAG	1 cut(s)	86
Bst2BI	CACGAG	1 cut(s)	86
Bst4CI	ACNGT	1 cut(s)	183
Bst6I	CTCTTC	2 cut(s)	120, 200
BstC8I	GCNNGC	1 cut(s)	392
BstDEI	CTNAG	1 cut(s)	159
BstFNI	CGCG	1 cut(s)	392
BstHHI	GCGC	2 cut(s)	392, 394
BstKTI	GATC	4 cut(s)	22, 255, 324, 329
BstMBI	GATC	4 cut(s)	19, 252, 321, 326
BstMWI	GCNNNNNNNGC	3 cut(s)	316, 338, 371
BstNSI	RCATGY	1 cut(s)	196
BstSCI	CCNGG	1 cut(s)	367
BstUI	CGCG	1 cut(s)	392
BstV1I	GCAGC	2 cut(s)	275, 278
BstX2I	RGATCY	1 cut(s)	326
BstYI	RGATCY	1 cut(s)	326
Bsu15I	ATCGAT	1 cut(s)	48
BsuRI	GGCC	1 cut(s)	310
BsuTUI	ATCGAT	1 cut(s)	48
BveI	ACCTGC	1 cut(s)	117
Cac8I	GCNNGC	1 cut(s)	392
CfoI	GCGC	2 cut(s)	392, 394
Cfr13I	GGNCC	2 cut(s)	142, 405
ClaI	ATCGAT	1 cut(s)	48
Csp6I	GTAC	1 cut(s)	345
CviAII	CATG	1 cut(s)	193
CviJI	RGCY	7 cut(s)	40, 158, 269, 282, 310, 365, 374
CviKI_1	RGCY	7 cut(s)	40, 158, 269, 282, 310, 365, 374
CviQI	GTAC	1 cut(s)	345
DdeI	CTNAG	1 cut(s)	159
DpnI	GATC	4 cut(s)	21, 254, 323, 328
DpnII	GATC	4 cut(s)	19, 252, 321, 326
EaeI	YGGCCR	1 cut(s)	308
Eam1104I	CTCTTC	2 cut(s)	120, 200
EarI	CTCTTC	2 cut(s)	120, 200
EciI	GGCGGA	3 cut(s)	59, 273, 302
Ecl136II	GAGCTC	1 cut(s)	282
Eco24I	GRGCYC	3 cut(s)	284, 367, 376
Eco47I	GGWCC	2 cut(s)	142, 405
Eco53kI	GAGCTC	1 cut(s)	282
EcoICRI	GAGCTC	1 cut(s)	282
EcoT38I	GRGCYC	3 cut(s)	284, 367, 376
FaeI	CATG	1 cut(s)	196
FaiI	YATR	1 cut(s)	194
FaqI	GGGAC	2 cut(s)	62, 203
FatI	CATG	1 cut(s)	192
Fnu4HI	GCNGC	2 cut(s)	264, 267
FriOI	GRGCYC	3 cut(s)	284, 367, 376
Fsp4HI	GCNGC	2 cut(s)	264, 267
FspBI	CTAG	1 cut(s)	412
GlaI	GCGC	2 cut(s)	391, 393
GluI	GCNGC	2 cut(s)	264, 267
HaeIII	GGCC	1 cut(s)	310
HapII	CCGG	3 cut(s)	140, 273, 368
HhaI	GCGC	2 cut(s)	392, 394
Hin1II	CATG	1 cut(s)	196
Hin6I	GCGC	2 cut(s)	390, 392
HinP1I	GCGC	2 cut(s)	390, 392
HincII	GTYRAC	1 cut(s)	168
HindII	GTYRAC	1 cut(s)	168
HinfI	GANTC	1 cut(s)	91
HpaII	CCGG	3 cut(s)	140, 273, 368
HphI	GGTGA	1 cut(s)	394
Hpy166II	GTNNAC	2 cut(s)	168, 385
Hpy188I	TCNGA	2 cut(s)	124, 326
Hpy188III	TCNNGA	3 cut(s)	98, 140, 199
Hpy8I	GTNNAC	2 cut(s)	168, 385
HpyAV	CCTTC	4 cut(s)	206, 223, 235, 373
HpyCH4III	ACNGT	1 cut(s)	183
HpyCH4V	TGCA	1 cut(s)	173
HpyF10VI	GCNNNNNNNGC	3 cut(s)	316, 338, 371
HpyF3I	CTNAG	1 cut(s)	159
Hsp92II	CATG	1 cut(s)	196
HspAI	GCGC	2 cut(s)	390, 392
Kpn2I	TCCGGA	1 cut(s)	139
Kzo9I	GATC	4 cut(s)	19, 252, 321, 326
LmnI	GCTCC	5 cut(s)	142, 244, 260, 370, 371
LpnPI	CCDG	9 cut(s)	30, 122, 146, 153, 165, 286, 318, 381, 389
Lsp1109I	GCAGC	2 cut(s)	275, 278
LweI	GCATC	1 cut(s)	182
MaeI	CTAG	1 cut(s)	412
MalI	GATC	4 cut(s)	21, 254, 323, 328
MboI	GATC	4 cut(s)	19, 252, 321, 326
MboII	GAAGA	6 cut(s)	86, 137, 214, 217, 247, 250
MflI	RGATCY	1 cut(s)	326
MhlI	GDGCHC	3 cut(s)	284, 367, 376
MluCI	AATT	1 cut(s)	356
MnlI	CCTC	3 cut(s)	75, 83, 180
MroI	TCCGGA	1 cut(s)	139
MseI	TTAA	1 cut(s)	44
MspA1I	CMGCKG	1 cut(s)	332
MspI	CCGG	3 cut(s)	140, 273, 368
MspR9I	CCNGG	1 cut(s)	369
MvnI	CGCG	1 cut(s)	392
MwoI	GCNNNNNNNGC	3 cut(s)	316, 338, 371
NciI	CCSGG	1 cut(s)	369
NdeII	GATC	4 cut(s)	19, 252, 321, 326
NlaIII	CATG	1 cut(s)	196
NlaIV	GGNNCC	3 cut(s)	144, 366, 373
NmeAIII	GCCGAG	1 cut(s)	263
NspI	RCATGY	1 cut(s)	196
PauI	GCGCGC	1 cut(s)	390
PciI	ACATGT	1 cut(s)	192
PfeI	GAWTC	1 cut(s)	91
PfoI	TCCNGGA	1 cut(s)	367
PkrI	GCNGC	2 cut(s)	265, 268
PscI	ACATGT	1 cut(s)	192
PshBI	ATTAAT	1 cut(s)	44
Psp124BI	GAGCTC	1 cut(s)	284
PspN4I	GGNNCC	3 cut(s)	144, 366, 373
PspPI	GGNCC	2 cut(s)	142, 405
PsuI	RGATCY	1 cut(s)	326
PteI	GCGCGC	1 cut(s)	390
RsaI	GTAC	1 cut(s)	346
RsaNI	GTAC	1 cut(s)	345
SacI	GAGCTC	1 cut(s)	284
SaqAI	TTAA	1 cut(s)	44
SatI	GCNGC	2 cut(s)	264, 267
Sau3AI	GATC	4 cut(s)	19, 252, 321, 326
Sau96I	GGNCC	2 cut(s)	142, 405
ScrFI	CCNGG	1 cut(s)	369
SduI	GDGCHC	3 cut(s)	284, 367, 376
SetI	ASST	8 cut(s)	19, 42, 111, 160, 165, 217, 284, 384
SfaNI	GCATC	1 cut(s)	182
SinI	GGWCC	2 cut(s)	142, 405
Sse9I	AATT	1 cut(s)	356
SsiI	CCGC	4 cut(s)	70, 258, 287, 330
SspMI	CTAG	1 cut(s)	412
SstI	GAGCTC	1 cut(s)	284
StyD4I	CCNGG	1 cut(s)	367
TaaI	ACNGT	1 cut(s)	183
TaqI	TCGA	2 cut(s)	48, 176
TasI	AATT	1 cut(s)	356
TfiI	GAWTC	1 cut(s)	91
Tru1I	TTAA	1 cut(s)	44
Tru9I	TTAA	1 cut(s)	44
TseI	GCWGC	2 cut(s)	263, 266
TspDTI	ATGAA	1 cut(s)	308
VpaK11BI	GGWCC	2 cut(s)	142, 405
VspI	ATTAAT	1 cut(s)	44
XapI	RAATTY	1 cut(s)	356
XceI	RCATGY	1 cut(s)	196
XcmI	CCANNNNNNNNNTGG	1 cut(s)	356
XspI	CTAG	1 cut(s)	412

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.