Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000004

Orthogroup ID

OG0006877

Physical Location & Seq

Genomic Coordinates Forward (+)

15343604 .. 15353463

Gene Structure 9860 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_4G00295310.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 405 bp

ATGACGGCGTGGTGGAAGGGACAAGGTGGATTGGCCCGAATCAATGATGGGCCCGGTGAATTCCTTGGTGGACTCCCCTATTGGGCCGGCCCGTTTGGGGCGGGGAAAACAACTAACCGAGGAGAGTCCCGAATCCCTACTTGGATTCCAATGCTTTCTCTCACGTACTTTGAGAGTCGCAAACCTTCCGTTGCTCGAGTAACCGGAGGACACAATGTTATTGCATCACCAAGAGATAATCCATTCACTCATAAGACAACTATGGTGTCTCAGACCGACTCCGGCTCCCGAATTCGACTTCGGAGGCTCCAAAACTCGTCTTGCCCCCAACCCGATCTCACCTTTGCCGATGAGCTATTCGACGATGGTGTCATTCTTGCTCTCCGCCTCGTCCCCGCCCACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

134

Amino Acids

14.69

Weight (kDa)

9.73

Isoelectric Point (pI)

45.79

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006877)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G22190
fragaria_vesca	FvH4_3g01370
malus_domestica	MD05G1352700.v1.1 MD10G1327300.v1.1
prunus_persica	Prupe.4G014700_v2.0.a1
pyrus_communis	pycom05g31990 pycom10g27680
rosa_chinensis	RchiOBHm_Chr5g0001991
rosa_laevigata	RLG00000019620 RLG00000030987
rosa_multiflora	Rmu_co8161534.1_g000001 Rmu_sc0000279.1_g000042 Rmu_sc0000737.1_g000017 Rmu_sc0001248.1_g000004 Rmu_sc0002451.1_g000040 Rmu_sc0003473.1_g000004 Rmu_sc0022192.1_g000001 Rmu_sc0023655.1_g000001
rosa_roxburghii	Rroxscaffold_1G00074360 Rroxscaffold_4G00295310
rosa_rugosa	Rorug04G0394200
rosa_samantha	Rh5AG015400 Rh5BG019000 Rh5CG016700 Rh5DG017300
rosa_wichuraiana	Rw5G001510

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	368
AciI	CCGC	3 cut(s)	101, 385, 396
AcsI	RAATTY	2 cut(s)	59, 291
AfaI	GTAC	1 cut(s)	167
AfiI	CCNNNNNNNGG	2 cut(s)	82, 97
AjuI	GAANNNNNNNTTGG	2 cut(s)	124, 156
AluBI	AGCT	1 cut(s)	355
AluI	AGCT	1 cut(s)	355
Alw26I	GTCTC	1 cut(s)	273
Ama87I	CYCGRG	1 cut(s)	195
AoxI	GGCC	4 cut(s)	33, 50, 84, 88
ApaI	GGGCCC	1 cut(s)	54
ApoI	RAATTY	2 cut(s)	59, 291
AspS9I	GGNCC	5 cut(s)	34, 50, 51, 84, 89
AsuC2I	CCSGG	1 cut(s)	54
AsuHPI	GGTGA	3 cut(s)	68, 219, 331
AvaI	CYCGRG	1 cut(s)	195
BaeGI	GKGCMC	1 cut(s)	54
BanII	GRGCYC	1 cut(s)	54
BccI	CCATC	2 cut(s)	41, 359
BceAI	ACGGC	1 cut(s)	21
BcnI	CCSGG	1 cut(s)	54
BcoDI	GTCTC	1 cut(s)	273
BfaI	CTAG	1 cut(s)	403
Bme1390I	CCNGG	1 cut(s)	54
BmeT110I	CYCGRG	1 cut(s)	195
BmgT120I	GGNCC	5 cut(s)	34, 50, 51, 84, 89
BmiI	GGNNCC	3 cut(s)	52, 286, 308
BmrFI	CCNGG	1 cut(s)	54
BmsI	GCATC	1 cut(s)	233
BpuMI	CCSGG	1 cut(s)	54
BsaAI	YACGTR	1 cut(s)	165
BsaJI	CCNNGG	2 cut(s)	64, 118
BsaWI	WCCGGW	1 cut(s)	203
BsaXI	ACNNNNNCTCC	2 cut(s)	269, 299
Bsc4I	CCNNNNNNNGG	2 cut(s)	82, 97
Bse118I	RCCGGY	1 cut(s)	86
BseDI	CCNNGG	2 cut(s)	64, 118
BseLI	CCNNNNNNNGG	2 cut(s)	82, 97
BseMII	CTCAG	1 cut(s)	284
BseRI	GAGGAG	1 cut(s)	135
BseSI	GKGCMC	1 cut(s)	54
BshFI	GGCC	4 cut(s)	35, 52, 86, 90
BsiHKCI	CYCGRG	1 cut(s)	195
BsiSI	CCGG	4 cut(s)	54, 87, 204, 282
BslFI	GGGAC	3 cut(s)	33, 112, 377
BslI	CCNNNNNNNGG	2 cut(s)	82, 97
BsmAI	GTCTC	1 cut(s)	273
BsmFI	GGGAC	3 cut(s)	33, 112, 377
BsnI	GGCC	4 cut(s)	35, 52, 86, 90
BsoBI	CYCGRG	1 cut(s)	195
Bsp120I	GGGCCC	1 cut(s)	50
Bsp1286I	GDGCHC	1 cut(s)	54
Bsp143I	GATC	1 cut(s)	334
BspACI	CCGC	3 cut(s)	101, 385, 396
BspANI	GGCC	4 cut(s)	35, 52, 86, 90
BspCNI	CTCAG	1 cut(s)	283
BspLI	GGNNCC	3 cut(s)	52, 286, 308
BsrFI	RCCGGY	1 cut(s)	86
BssAI	RCCGGY	1 cut(s)	86
BssECI	CCNNGG	2 cut(s)	64, 118
BssMI	GATC	1 cut(s)	334
BssT1I	CCWWGG	1 cut(s)	64
BstBAI	YACGTR	1 cut(s)	165
BstC8I	GCNNGC	1 cut(s)	88
BstDEI	CTNAG	1 cut(s)	270
BstKTI	GATC	1 cut(s)	337
BstMAI	GTCTC	1 cut(s)	273
BstMBI	GATC	1 cut(s)	334
BstSCI	CCNGG	1 cut(s)	52
BstSLI	GKGCMC	1 cut(s)	54
BsuRI	GGCC	4 cut(s)	35, 52, 86, 90
Cac8I	GCNNGC	1 cut(s)	88
Cfr10I	RCCGGY	1 cut(s)	86
Cfr13I	GGNCC	5 cut(s)	34, 50, 51, 84, 89
Csp6I	GTAC	1 cut(s)	166
CviJI	RGCY	7 cut(s)	35, 52, 86, 90, 285, 307, 355
CviKI_1	RGCY	7 cut(s)	35, 52, 86, 90, 285, 307, 355
CviQI	GTAC	1 cut(s)	166
DdeI	CTNAG	1 cut(s)	270
DpnI	GATC	1 cut(s)	336
DpnII	GATC	1 cut(s)	334
DrdI	GACNNNNNNGTC	1 cut(s)	368
DseDI	GACNNNNNNGTC	1 cut(s)	368
EciI	GGCGGA	1 cut(s)	374
Eco130I	CCWWGG	1 cut(s)	64
Eco24I	GRGCYC	1 cut(s)	54
Eco88I	CYCGRG	1 cut(s)	195
EcoRI	GAATTC	2 cut(s)	59, 291
EcoT14I	CCWWGG	1 cut(s)	64
EcoT38I	GRGCYC	1 cut(s)	54
ErhI	CCWWGG	1 cut(s)	64
FaiI	YATR	2 cut(s)	252, 263
FaqI	GGGAC	3 cut(s)	33, 112, 377
FauI	CCCGC	2 cut(s)	94, 403
FriOI	GRGCYC	1 cut(s)	54
FseI	GGCCGGCC	1 cut(s)	90
FspBI	CTAG	1 cut(s)	403
HaeIII	GGCC	4 cut(s)	35, 52, 86, 90
HapII	CCGG	4 cut(s)	54, 87, 204, 282
HinfI	GANTC	7 cut(s)	39, 72, 125, 132, 145, 175, 278
HpaII	CCGG	4 cut(s)	54, 87, 204, 282
HphI	GGTGA	3 cut(s)	68, 219, 331
Hpy166II	GTNNAC	1 cut(s)	71
Hpy188I	TCNGA	2 cut(s)	273, 303
Hpy188III	TCNNGA	2 cut(s)	129, 288
Hpy8I	GTNNAC	1 cut(s)	71
Hpy99I	CGWCG	1 cut(s)	365
HpyAV	CCTTC	2 cut(s)	10, 195
HpyCH4IV	ACGT	1 cut(s)	164
HpyCH4V	TGCA	1 cut(s)	224
HpyF3I	CTNAG	1 cut(s)	270
HpySE526I	ACGT	1 cut(s)	164
KroI	GCCGGC	1 cut(s)	86
KroNI	GCCGGC	1 cut(s)	88
Kzo9I	GATC	1 cut(s)	334
LmnI	GCTCC	2 cut(s)	290, 312
LpnPI	CCDG	4 cut(s)	67, 100, 217, 295
LweI	GCATC	1 cut(s)	233
MaeI	CTAG	1 cut(s)	403
MaeII	ACGT	1 cut(s)	164
MaeIII	GTNAC	1 cut(s)	199
MalI	GATC	1 cut(s)	336
MboI	GATC	1 cut(s)	334
MhlI	GDGCHC	1 cut(s)	54
MluCI	AATT	2 cut(s)	59, 291
MlyI	GAGTC	4 cut(s)	66, 134, 184, 272
MnlI	CCTC	4 cut(s)	113, 200, 297, 398
MroNI	GCCGGC	1 cut(s)	86
MspI	CCGG	4 cut(s)	54, 87, 204, 282
MspR9I	CCNGG	1 cut(s)	54
NaeI	GCCGGC	1 cut(s)	88
NciI	CCSGG	1 cut(s)	54
NdeII	GATC	1 cut(s)	334
NgoMIV	GCCGGC	1 cut(s)	86
NlaIV	GGNNCC	3 cut(s)	52, 286, 308
PaeR7I	CTCGAG	1 cut(s)	195
PdiI	GCCGGC	1 cut(s)	88
PfeI	GAWTC	3 cut(s)	39, 132, 145
PleI	GAGTC	4 cut(s)	66, 133, 183, 272
PpsI	GAGTC	4 cut(s)	66, 133, 183, 272
Ppu21I	YACGTR	1 cut(s)	165
PspN4I	GGNNCC	3 cut(s)	52, 286, 308
PspOMI	GGGCCC	1 cut(s)	50
PspPI	GGNCC	5 cut(s)	34, 50, 51, 84, 89
PspXI	VCTCGAGB	1 cut(s)	195
RigI	GGCCGGCC	1 cut(s)	90
RsaI	GTAC	1 cut(s)	167
RsaNI	GTAC	1 cut(s)	166
Sau3AI	GATC	1 cut(s)	334
Sau96I	GGNCC	5 cut(s)	34, 50, 51, 84, 89
SchI	GAGTC	4 cut(s)	66, 134, 184, 272
ScrFI	CCNGG	1 cut(s)	54
SduI	GDGCHC	1 cut(s)	54
SetI	ASST	5 cut(s)	28, 167, 187, 344, 357
SfaNI	GCATC	1 cut(s)	233
Sfr274I	CTCGAG	1 cut(s)	195
SlaI	CTCGAG	1 cut(s)	195
SmlI	CTYRAG	1 cut(s)	195
SmoI	CTYRAG	1 cut(s)	195
Sse9I	AATT	2 cut(s)	59, 291
SsiI	CCGC	3 cut(s)	101, 385, 396
SspMI	CTAG	1 cut(s)	403
StyD4I	CCNGG	1 cut(s)	52
StyI	CCWWGG	1 cut(s)	64
TaiI	ACGT	1 cut(s)	167
TaqI	TCGA	3 cut(s)	196, 295, 360
TaqII	GACCGA	1 cut(s)	290
TasI	AATT	2 cut(s)	59, 291
TfiI	GAWTC	3 cut(s)	39, 132, 145
TspGWI	ACGGA	1 cut(s)	178
XapI	RAATTY	2 cut(s)	59, 291
XhoI	CTCGAG	1 cut(s)	195
XspI	CTAG	1 cut(s)	403

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.