Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr05

Orthogroup ID

OG0006877

Physical Location & Seq

Genomic Coordinates Reverse (-)

46918268 .. 46919317

Gene Structure 1050 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD05G1352700.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1050 bp

ATGGAGCACAGCCCCAAATTCAAACCCCACCTTTCACAGAGCAGCAGCCGAAGAAGGCGAACCAGCACCGATTCCAACTCCCCCGAGTTCGAGTTTTGGAGAAACCCGTCTTGCCCTCAGCCCAATCTCCTCTCCGCCGATGAGCTCTTCGTCGACGGCGTCCTTCTCCCTCTCCACCTCCTCCCCCCTCCTTTTCTTAACCACTCCGACCCACCTGACCCAAATCCACAACCCATCTCACAACCTCCTGTTCCTGACCCAAAACCCATTTCGGAACCCGACCCAGAATCCGAACCCGGTCCAGGACCTGAGTTGTCAGCTGCTCCCGTTCTAACCGCATCGAAGCGTTGGAGGGACATTTTTAGGATGGGCGAGAAGAAATCCGTCAAAGCCGACGAGACTGATAAAGAGAAAGACAAGAAGAAAGACCGAAAGGGCGGCGGCGGCGGAGCGAGCTCGGCGGAGCTGAACATCAATATATGGCCATTTTCGCGCAGTAGATCCGCCGGAAACGCATATACCCGACCCAAACCGTTCGGAGCTCCGGTGACCCGGAAGGTGAACAGCGCGCCGTGTTCAAGGAGCAACTCAACGGGCGAGTCGAAGTCTAGAAAGTGGCCACCTGCGAGTCCGGGTCGACCCGGAGTTCATTTGGGTCGGAGCAGCCCGGTTTGGCAGGTCCGGCGTGGAGCCTCGGCTGCTGGAAAGAGCAACTCCGACCCACAAGCTCGAAATGCTGAAAAGGGGACAAAAAAGGAAGTGCCGGAGAATCGCAGGAGTAAAAAAACTGCCGGAGCCGTCATCGCCGGAGGCAGCGGCTCGAAAGCTAGAGTCTTGAATTTGAATGTTCCGATGTGTATTGGGTATGGAAGCCATTTGAGCTGTAGAAGTGAGAATAGTGCAGTTGGAGTTGGCATTGGCGGCCGTGGAAGCGGCAGCAACAACCGTGGTGGTGATGCTAGCGGCGGCGTTAACGGTGGAGGAGGAAATGGCGGGGCTGTCGGTAATCTTTTCAATCTGCGCAGCCTTTTCACCAAGAAGGTGTATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

350

Amino Acids

36.99

Weight (kDa)

10.14

Isoelectric Point (pI)

63.04

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006877)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G22190
fragaria_vesca	FvH4_3g01370
malus_domestica	MD05G1352700.v1.1 MD10G1327300.v1.1
prunus_persica	Prupe.4G014700_v2.0.a1
pyrus_communis	pycom05g31990 pycom10g27680
rosa_chinensis	RchiOBHm_Chr5g0001991
rosa_laevigata	RLG00000019620 RLG00000030987
rosa_multiflora	Rmu_co8161534.1_g000001 Rmu_sc0000279.1_g000042 Rmu_sc0000737.1_g000017 Rmu_sc0001248.1_g000004 Rmu_sc0002451.1_g000040 Rmu_sc0003473.1_g000004 Rmu_sc0022192.1_g000001 Rmu_sc0023655.1_g000001
rosa_roxburghii	Rroxscaffold_1G00074360 Rroxscaffold_4G00295310
rosa_rugosa	Rorug04G0394200
rosa_samantha	Rh5AG015400 Rh5BG019000 Rh5CG016700 Rh5DG017300
rosa_wichuraiana	Rw5G001510

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	631
Acc16I	TGCGCA	1 cut(s)	1022
Acc36I	ACCTGC	2 cut(s)	631, 667
AccI	GTMKAC	2 cut(s)	153, 637
AccII	CGCG	2 cut(s)	493, 569
AclWI	GGATC	1 cut(s)	495
AcoI	YGGCCR	3 cut(s)	482, 617, 922
AcsI	RAATTY	2 cut(s)	17, 838
AcyI	GRCGYC	1 cut(s)	159
AfiI	CCNNNNNNNGG	1 cut(s)	302
AgsI	TTSAA	5 cut(s)	22, 579, 838, 844, 1015
AjnI	CCWGG	1 cut(s)	301
AjuI	GAANNNNNNNTTGG	2 cut(s)	253, 285
AluBI	AGCT	8 cut(s)	145, 320, 456, 466, 542, 728, 827, 882
AluI	AGCT	8 cut(s)	145, 320, 456, 466, 542, 728, 827, 882
Alw21I	GWGCWC	4 cut(s)	9, 147, 458, 544
Alw26I	GTCTC	1 cut(s)	392
AlwI	GGATC	1 cut(s)	495
AlwNI	CAGNNNCTG	1 cut(s)	308
Ama87I	CYCGRG	1 cut(s)	83
AoxI	GGCC	3 cut(s)	482, 617, 922
ApeKI	GCWGC	8 cut(s)	42, 45, 320, 663, 698, 813, 936, 1023
ApoI	RAATTY	2 cut(s)	17, 838
AspLEI	GCGC	4 cut(s)	495, 569, 571, 1023
AspS9I	GGNCC	3 cut(s)	299, 305, 679
AsuC2I	CCSGG	5 cut(s)	297, 553, 633, 642, 668
AsuHPI	GGTGA	4 cut(s)	559, 571, 965, 1024
AsuNHI	GCTAGC	1 cut(s)	959
AvaI	CYCGRG	1 cut(s)	83
AvaII	GGWCC	3 cut(s)	299, 305, 679
BalI	TGGCCA	2 cut(s)	484, 619
BanII	GRGCYC	3 cut(s)	147, 458, 544
Bbv12I	GWGCWC	4 cut(s)	9, 147, 458, 544
BbvCI	CCTCAGC	1 cut(s)	117
BbvI	GCAGC	8 cut(s)	54, 57, 307, 675, 685, 825, 948, 1035
BccI	CCATC	2 cut(s)	242, 361
BceAI	ACGGC	4 cut(s)	172, 556, 782, 909
BciT130I	CCWGG	1 cut(s)	303
BcnI	CCSGG	5 cut(s)	297, 553, 633, 642, 668
BcoDI	GTCTC	1 cut(s)	392
BfaI	CTAG	3 cut(s)	609, 828, 960
BfmI	CTRYAG	1 cut(s)	883
BfuAI	ACCTGC	2 cut(s)	631, 667
Bme1390I	CCNGG	6 cut(s)	297, 303, 553, 633, 642, 668
Bme18I	GGWCC	3 cut(s)	299, 305, 679
BmeT110I	CYCGRG	1 cut(s)	83
BmgT120I	GGNCC	3 cut(s)	299, 305, 679
BmiI	GGNNCC	3 cut(s)	276, 691, 796
BmrFI	CCNGG	6 cut(s)	297, 303, 553, 633, 642, 668
BmsI	GCATC	2 cut(s)	347, 946
BmtI	GCTAGC	1 cut(s)	963
Bpu10I	CCTNAGC	1 cut(s)	117
BpuMI	CCSGG	5 cut(s)	297, 553, 633, 642, 668
BsaHI	GRCGYC	1 cut(s)	159
BsaJI	CCNNGG	3 cut(s)	693, 925, 946
BsaWI	WCCGGW	1 cut(s)	544
BsaXI	ACNNNNNCTCC	2 cut(s)	531, 561
Bsc4I	CCNNNNNNNGG	1 cut(s)	302
BseBI	CCWGG	1 cut(s)	303
BseDI	CCNNGG	3 cut(s)	693, 925, 946
BseGI	GGATG	1 cut(s)	372
BseLI	CCNNNNNNNGG	1 cut(s)	302
BseMII	CTCAG	2 cut(s)	131, 300
BsePI	GCGCGC	1 cut(s)	567
BseRI	GAGGAG	3 cut(s)	119, 170, 996
BseX3I	CGGCCG	1 cut(s)	922
BseXI	GCAGC	8 cut(s)	54, 57, 307, 675, 685, 825, 948, 1035
BsgI	GTGCAG	1 cut(s)	921
Bsh1236I	CGCG	2 cut(s)	493, 569
Bsh1285I	CGRYCG	1 cut(s)	925
BshFI	GGCC	3 cut(s)	484, 619, 924
BsiEI	CGRYCG	1 cut(s)	925
BsiHKAI	GWGCWC	4 cut(s)	9, 147, 458, 544
BsiHKCI	CYCGRG	1 cut(s)	83
BslFI	GGGAC	2 cut(s)	368, 760
BslI	CCNNNNNNNGG	1 cut(s)	302
BsmAI	GTCTC	1 cut(s)	392
BsmFI	GGGAC	2 cut(s)	368, 760
BsnI	GGCC	3 cut(s)	484, 619, 924
BsoBI	CYCGRG	1 cut(s)	83
Bsp1286I	GDGCHC	4 cut(s)	9, 147, 458, 544
Bsp143I	GATC	1 cut(s)	500
BspANI	GGCC	3 cut(s)	484, 619, 924
BspCNI	CTCAG	2 cut(s)	130, 301
BspFNI	CGCG	2 cut(s)	493, 569
BspLI	GGNNCC	3 cut(s)	276, 691, 796
BspMI	ACCTGC	2 cut(s)	631, 667
BspOI	GCTAGC	1 cut(s)	963
BspPI	GGATC	1 cut(s)	495
BspQI	GCTCTTC	1 cut(s)	152
BssECI	CCNNGG	3 cut(s)	693, 925, 946
BssHII	GCGCGC	1 cut(s)	567
BssMI	GATC	1 cut(s)	500
BssNI	GRCGYC	1 cut(s)	159
Bst2UI	CCWGG	1 cut(s)	303
Bst4CI	ACNGT	3 cut(s)	534, 947, 977
Bst6I	CTCTTC	1 cut(s)	152
BstACI	GRCGYC	1 cut(s)	159
BstC8I	GCNNGC	3 cut(s)	454, 569, 961
BstDEI	CTNAG	2 cut(s)	117, 309
BstDSI	CCRYGG	2 cut(s)	925, 946
BstEII	GGTNACC	1 cut(s)	547
BstF5I	GGATG	1 cut(s)	372
BstFNI	CGCG	2 cut(s)	493, 569
BstHHI	GCGC	4 cut(s)	495, 569, 571, 1023
BstKTI	GATC	1 cut(s)	503
BstMAI	GTCTC	1 cut(s)	392
BstMBI	GATC	1 cut(s)	500
BstMCI	CGRYCG	1 cut(s)	925
BstNI	CCWGG	1 cut(s)	303
BstPI	GGTNACC	1 cut(s)	547
BstSCI	CCNGG	6 cut(s)	295, 301, 551, 631, 640, 666
BstSFI	CTRYAG	1 cut(s)	883
BstUI	CGCG	2 cut(s)	493, 569
BstV1I	GCAGC	8 cut(s)	54, 57, 307, 675, 685, 825, 948, 1035
BstX2I	RGATCY	1 cut(s)	500
BstYI	RGATCY	1 cut(s)	500
BstZI	CGGCCG	1 cut(s)	922
BsuRI	GGCC	3 cut(s)	484, 619, 924
BtgI	CCRYGG	2 cut(s)	925, 946
BtgZI	GCGATG	1 cut(s)	787
BtsCI	GGATG	1 cut(s)	372
BveI	ACCTGC	2 cut(s)	631, 667
Cac8I	GCNNGC	3 cut(s)	454, 569, 961
CaiI	CAGNNNCTG	1 cut(s)	308
CfoI	GCGC	4 cut(s)	495, 569, 571, 1023
Cfr13I	GGNCC	3 cut(s)	299, 305, 679
CseI	GACGC	1 cut(s)	148
CspCI	CAANNNNNGTGG	4 cut(s)	928, 931, 963, 966
DdeI	CTNAG	2 cut(s)	117, 309
DpnI	GATC	1 cut(s)	502
DpnII	GATC	1 cut(s)	500
EaeI	YGGCCR	3 cut(s)	482, 617, 922
EagI	CGGCCG	1 cut(s)	922
Eam1104I	CTCTTC	1 cut(s)	152
EarI	CTCTTC	1 cut(s)	152
EciI	GGCGGA	4 cut(s)	124, 462, 476, 493
Ecl136II	GAGCTC	3 cut(s)	145, 456, 542
EclXI	CGGCCG	1 cut(s)	922
Eco24I	GRGCYC	3 cut(s)	147, 458, 544
Eco47I	GGWCC	3 cut(s)	299, 305, 679
Eco52I	CGGCCG	1 cut(s)	922
Eco53kI	GAGCTC	3 cut(s)	145, 456, 542
Eco88I	CYCGRG	1 cut(s)	83
Eco91I	GGTNACC	1 cut(s)	547
EcoICRI	GAGCTC	3 cut(s)	145, 456, 542
EcoO109I	RGGNCCY	1 cut(s)	305
EcoO65I	GGTNACC	1 cut(s)	547
EcoRII	CCWGG	1 cut(s)	301
EcoT38I	GRGCYC	3 cut(s)	147, 458, 544
FaiI	YATR	5 cut(s)	479, 481, 517, 519, 867
FaqI	GGGAC	2 cut(s)	368, 760
FauI	CCCGC	1 cut(s)	986
FblI	GTMKAC	2 cut(s)	153, 637
FokI	GGATG	1 cut(s)	379
FriOI	GRGCYC	3 cut(s)	147, 458, 544
FspBI	CTAG	3 cut(s)	609, 828, 960
FspI	TGCGCA	1 cut(s)	1022
GlaI	GCGC	4 cut(s)	494, 568, 570, 1022
HaeIII	GGCC	3 cut(s)	484, 619, 924
HgaI	GACGC	1 cut(s)	148
HhaI	GCGC	4 cut(s)	495, 569, 571, 1023
Hin1I	GRCGYC	1 cut(s)	159
Hin6I	GCGC	4 cut(s)	493, 567, 569, 1021
HinP1I	GCGC	4 cut(s)	493, 567, 569, 1021
HincII	GTYRAC	3 cut(s)	154, 638, 973
HindII	GTYRAC	3 cut(s)	154, 638, 973
HinfI	GANTC	6 cut(s)	71, 287, 599, 628, 769, 831
HpaI	GTTAAC	1 cut(s)	973
HphI	GGTGA	4 cut(s)	559, 571, 965, 1024
Hpy166II	GTNNAC	4 cut(s)	154, 562, 638, 973
Hpy188I	TCNGA	7 cut(s)	208, 274, 292, 539, 660, 718, 852
Hpy188III	TCNNGA	3 cut(s)	254, 609, 835
Hpy8I	GTNNAC	4 cut(s)	154, 562, 638, 973
Hpy99I	CGWCG	3 cut(s)	155, 158, 398
HpyAV	CCTTC	4 cut(s)	48, 173, 550, 1033
HpyCH4III	ACNGT	3 cut(s)	534, 947, 977
HpyCH4V	TGCA	1 cut(s)	902
HpyF3I	CTNAG	2 cut(s)	117, 309
Hsp92I	GRCGYC	1 cut(s)	159
HspAI	GCGC	4 cut(s)	493, 567, 569, 1021
KspAI	GTTAAC	1 cut(s)	973
Kzo9I	GATC	1 cut(s)	500
LguI	GCTCTTC	1 cut(s)	152
Lsp1109I	GCAGC	8 cut(s)	54, 57, 307, 675, 685, 825, 948, 1035
LweI	GCATC	2 cut(s)	347, 946
MaeI	CTAG	3 cut(s)	609, 828, 960
MaeIII	GTNAC	1 cut(s)	547
MalI	GATC	1 cut(s)	502
MboI	GATC	1 cut(s)	500
MboII	GAAGA	4 cut(s)	63, 139, 388, 433
MflI	RGATCY	1 cut(s)	500
MhlI	GDGCHC	4 cut(s)	9, 147, 458, 544
MlsI	TGGCCA	2 cut(s)	484, 619
MluCI	AATT	2 cut(s)	17, 838
MluNI	TGGCCA	2 cut(s)	484, 619
MlyI	GAGTC	3 cut(s)	608, 637, 840
MmeI	TCCRAC	6 cut(s)	99, 231, 329, 638, 741, 886
Mox20I	TGGCCA	2 cut(s)	484, 619
MscI	TGGCCA	2 cut(s)	484, 619
MseI	TTAA	3 cut(s)	198, 972, 1048
Msp20I	TGGCCA	2 cut(s)	484, 619
MspA1I	CMGCKG	2 cut(s)	320, 816
MspR9I	CCNGG	6 cut(s)	297, 303, 553, 633, 642, 668
MvaI	CCWGG	1 cut(s)	303
MvnI	CGCG	2 cut(s)	493, 569
NciI	CCSGG	5 cut(s)	297, 553, 633, 642, 668
NdeII	GATC	1 cut(s)	500
NheI	GCTAGC	1 cut(s)	959
NlaIV	GGNNCC	3 cut(s)	276, 691, 796
NmeAIII	GCCGAG	2 cut(s)	437, 674
NmuCI	GTSAC	1 cut(s)	547
NsbI	TGCGCA	1 cut(s)	1022
PaqCI	CACCTGC	1 cut(s)	631
PauI	GCGCGC	1 cut(s)	567
PciSI	GCTCTTC	1 cut(s)	152
PcsI	WCGNNNNNNNCGW	2 cut(s)	156, 599
PfeI	GAWTC	3 cut(s)	71, 287, 769
PflFI	GACNNNGTC	1 cut(s)	158
PfoI	TCCNGGA	1 cut(s)	301
PleI	GAGTC	3 cut(s)	607, 636, 839
PpsI	GAGTC	3 cut(s)	607, 636, 839
PpuMI	RGGWCCY	1 cut(s)	305
Psp124BI	GAGCTC	3 cut(s)	147, 458, 544
Psp5II	RGGWCCY	1 cut(s)	305
Psp6I	CCWGG	1 cut(s)	301
PspEI	GGTNACC	1 cut(s)	547
PspGI	CCWGG	1 cut(s)	301
PspN4I	GGNNCC	3 cut(s)	276, 691, 796
PspPI	GGNCC	3 cut(s)	299, 305, 679
PspPPI	RGGWCCY	1 cut(s)	305
PstNI	CAGNNNCTG	1 cut(s)	308
PsuI	RGATCY	1 cut(s)	500
PsyI	GACNNNGTC	1 cut(s)	158
PteI	GCGCGC	1 cut(s)	567
PvuII	CAGCTG	1 cut(s)	320
SacI	GAGCTC	3 cut(s)	147, 458, 544
SalI	GTCGAC	2 cut(s)	152, 636
SapI	GCTCTTC	1 cut(s)	152
SaqAI	TTAA	3 cut(s)	198, 972, 1048
Sau3AI	GATC	1 cut(s)	500
Sau96I	GGNCC	3 cut(s)	299, 305, 679
SchI	GAGTC	3 cut(s)	608, 637, 840
ScrFI	CCNGG	6 cut(s)	297, 303, 553, 633, 642, 668
SduI	GDGCHC	4 cut(s)	9, 147, 458, 544
SfaNI	GCATC	2 cut(s)	347, 946
SfcI	CTRYAG	1 cut(s)	883
SgrDI	CGTCGACG	1 cut(s)	152
SinI	GGWCC	3 cut(s)	299, 305, 679
Sse9I	AATT	2 cut(s)	17, 838
SspMI	CTAG	3 cut(s)	609, 828, 960
SstI	GAGCTC	3 cut(s)	147, 458, 544
StyD4I	CCNGG	6 cut(s)	295, 301, 551, 631, 640, 666
TaaI	ACNGT	3 cut(s)	534, 947, 977
TaqI	TCGA	7 cut(s)	90, 153, 341, 602, 637, 730, 821
TaqII	GACCGA	1 cut(s)	444
TasI	AATT	2 cut(s)	17, 838
TauI	GCSGC	8 cut(s)	441, 444, 447, 819, 924, 936, 966, 969
TfiI	GAWTC	3 cut(s)	71, 287, 769
Tru1I	TTAA	3 cut(s)	198, 972, 1048
Tru9I	TTAA	3 cut(s)	198, 972, 1048
TseFI	GTSAC	1 cut(s)	547
TseI	GCWGC	8 cut(s)	42, 45, 320, 663, 698, 813, 936, 1023
Tsp45I	GTSAC	1 cut(s)	547
TspDTI	ATGAA	1 cut(s)	638
TspGWI	ACGGA	1 cut(s)	373
Tth111I	GACNNNGTC	1 cut(s)	158
VpaK11BI	GGWCC	3 cut(s)	299, 305, 679
XapI	RAATTY	2 cut(s)	17, 838
XbaI	TCTAGA	1 cut(s)	608
XmiI	GTMKAC	2 cut(s)	153, 637
XspI	CTAG	3 cut(s)	609, 828, 960

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.