RLG00000030987

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
OG0006877
Physical Location & Seq
Forward (+)
1181812 .. 1182804
993 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000030987

Sequence Viewer

Length: 993 bp
ATGGCGGATGGCTCCAGATTCAAACCCTACAGTCCCAACACTCAAAGAAGCCGAACCAGCACCGACTCCAGCTCCCCGGAATTCGAGTTCTGGAGGCTCCAAAACCCGTCTTGCCCGCAACCTGATCTCATCTCTGCCGATGAACTATTCGTCGACGGTGTCATTCTCCCTCTCCGCCTCGTCCCCGCCCCCAAAAACCCGCCCGACCCGAACCGGCGACCCGACTCGGAAGAGATTTCTGCTCCGGACCCAGAACCGGAACCCGGCCCGGAAGCCCAGGTGTCGACCGGAGCTCTGGTGCTGACCGCATCGAAGCGGTGGAGGGACATGTTCAAGAAGAAGAGTGAGGGTAGTGACAAGGAGAAGGAGAAGAAGAAGGAGCGGAAGAGCGGCGGAGGAGCCACCGGAGCTAGCTCGGCGGAGCTGAACATCAATCTGTGGCCGTTTTCGCGGAGCAGATCCGCCGGAAATGCTTGTACCCGACCCAAATTCGGGGCTCCGGGAACCCGGAAGGTGAACAGCGCGCCGTGTTCGAGGAGCAACTCGACGGGCGAGTCCAAGTCTACGAGGAAGTGGCCGGCGAGTCCGGGTCGGGCCGGAGTCCACTTGGGTCGGAGCAGCCCGGTTTGGCAGGTCCGGCGTGGAGCCTCAACCCTGGGTAAAACCTCCGAAACCCAAGTCAGGAATGCTGAAAAGAGCACCAAAAAAGAAGCACCCGAAACTCGCCGGAGTAAAACCACCGCATCCGGCGGCAGAGGAGGTGGTGCAAAACCCAGAGTCTTGAACTTGAATGTTCCGACGTGTATCGGGTACAGAAGCCATTTGAGTTGTAGAAGTGACGTCATGAATAGTGCTGTAGGAATCAGCGGCAGTAGTGGTAGCAACAACCACCGTGGCGCCGCTGCTGGCGGTGGAGGAGATAGTAGTAACGCTGCTGGGGCTGGTAGTAATCTTTTTAATCTGCGCAGCCTTTTCTCTAAGAAGGTGTATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

331

Amino Acids

35.07

Weight (kDa)

10.22

Isoelectric Point (pI)

62.83

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 553
AatII GACGTC 1 cut(s) 843
Acc16I TGCGCA 1 cut(s) 965
Acc36I ACCTGC 1 cut(s) 622
AccB1I GGYRCC 1 cut(s) 896
AccBSI CCGCTC 2 cut(s) 382, 390
AccI GTMKAC 3 cut(s) 153, 284, 563
AccII CGCG 2 cut(s) 451, 524
AccIII TCCGGA 1 cut(s) 244
AclWI GGATC 1 cut(s) 453
AcoI YGGCCR 2 cut(s) 440, 575
AcsI RAATTY 2 cut(s) 80, 488
AcyI GRCGYC 2 cut(s) 840, 897
AfaI GTAC 2 cut(s) 478, 812
AfiI CCNNNNNNNGG 5 cut(s) 256, 263, 491, 492, 681
AflIII ACRYGT 2 cut(s) 327, 800
AgsI TTSAA 4 cut(s) 22, 334, 784, 790
AjiI CACGTC 1 cut(s) 801
AjnI CCWGG 2 cut(s) 276, 654
AloI GAACNNNNNNTCC 2 cut(s) 71, 103
AluBI AGCT 5 cut(s) 72, 293, 410, 414, 424
AluI AGCT 5 cut(s) 72, 293, 410, 414, 424
Alw21I GWGCWC 2 cut(s) 295, 701
AlwI GGATC 1 cut(s) 453
Aor13HI TCCGGA 1 cut(s) 244
AoxI GGCC 4 cut(s) 265, 440, 575, 594
ApeKI GCWGC 4 cut(s) 618, 902, 932, 966
ApoI RAATTY 2 cut(s) 80, 488
ArsI GACNNNNNNTTYG 2 cut(s) 663, 695
AspLEI GCGC 4 cut(s) 524, 526, 899, 966
AspS9I GGNCC 4 cut(s) 247, 266, 594, 634
AsuC2I CCSGG 7 cut(s) 77, 264, 269, 501, 508, 588, 623
AsuHPI GGTGA 1 cut(s) 526
AsuNHI GCTAGC 1 cut(s) 410
AvaII GGWCC 2 cut(s) 247, 634
BanI GGYRCC 1 cut(s) 896
BanII GRGCYC 2 cut(s) 295, 499
Bbv12I GWGCWC 2 cut(s) 295, 701
BbvI GCAGC 4 cut(s) 630, 889, 919, 978
BccI CCATC 1 cut(s) 2
BceAI ACGGC 2 cut(s) 427, 511
BciT130I CCWGG 2 cut(s) 278, 656
BcnI CCSGG 7 cut(s) 77, 264, 269, 501, 508, 588, 623
BfaI CTAG 1 cut(s) 411
BfmI CTRYAG 2 cut(s) 28, 855
BfoI RGCGCY 1 cut(s) 900
BfuAI ACCTGC 1 cut(s) 622
BisI GCNGC 8 cut(s) 391, 619, 751, 868, 900, 903, 933, 967
BlsI GCNGC 8 cut(s) 392, 620, 752, 869, 901, 904, 934, 968
Bme1390I CCNGG 9 cut(s) 77, 264, 269, 278, 501, 508, 588, 623, 656
Bme18I GGWCC 2 cut(s) 247, 634
BmgBI CACGTC 1 cut(s) 801
BmgT120I GGNCC 4 cut(s) 247, 266, 594, 634
BmiI GGNNCC 9 cut(s) 13, 98, 249, 261, 400, 498, 505, 646, 898
BmrFI CCNGG 9 cut(s) 77, 264, 269, 278, 501, 508, 588, 623, 656
BmsI GCATC 2 cut(s) 317, 752
BmtI GCTAGC 1 cut(s) 414
BpmI CTGGAG 2 cut(s) 52, 112
BpuMI CCSGG 7 cut(s) 77, 264, 269, 501, 508, 588, 623
BsaHI GRCGYC 2 cut(s) 840, 897
BsaJI CCNNGG 5 cut(s) 75, 276, 654, 655, 892
BsaWI WCCGGW 4 cut(s) 244, 256, 287, 404
BsaXI ACNNNNNCTCC 4 cut(s) 56, 86, 282, 312
Bsc4I CCNNNNNNNGG 5 cut(s) 256, 263, 491, 492, 681
Bse118I RCCGGY 2 cut(s) 213, 577
BseAI TCCGGA 1 cut(s) 244
BseBI CCWGG 2 cut(s) 278, 656
BseDI CCNNGG 5 cut(s) 75, 276, 654, 655, 892
BseGI GGATG 2 cut(s) 13, 743
BseLI CCNNNNNNNGG 5 cut(s) 256, 263, 491, 492, 681
BsePI GCGCGC 1 cut(s) 522
BseRI GAGGAG 4 cut(s) 411, 550, 771, 930
BseXI GCAGC 4 cut(s) 630, 889, 919, 978
BseYI CCCAGC 1 cut(s) 935
Bsh1236I CGCG 2 cut(s) 451, 524
Bsh1285I CGRYCG 1 cut(s) 288
BshFI GGCC 4 cut(s) 267, 442, 577, 596
BshNI GGYRCC 1 cut(s) 896
BsiEI CGRYCG 1 cut(s) 288
BsiHKAI GWGCWC 2 cut(s) 295, 701
BslFI GGGAC 3 cut(s) 18, 167, 338
BslI CCNNNNNNNGG 5 cut(s) 256, 263, 491, 492, 681
BsmFI GGGAC 3 cut(s) 18, 167, 338
BsmI GAATGC 1 cut(s) 691
BsnI GGCC 4 cut(s) 267, 442, 577, 596
Bsp1286I GDGCHC 3 cut(s) 295, 499, 701
Bsp13I TCCGGA 1 cut(s) 244
Bsp143I GATC 2 cut(s) 124, 458
BspANI GGCC 4 cut(s) 267, 442, 577, 596
BspEI TCCGGA 1 cut(s) 244
BspFNI CGCG 2 cut(s) 451, 524
BspHI TCATGA 1 cut(s) 843
BspLI GGNNCC 9 cut(s) 13, 98, 249, 261, 400, 498, 505, 646, 898
BspMI ACCTGC 1 cut(s) 622
BspOI GCTAGC 1 cut(s) 414
BspPI GGATC 1 cut(s) 453
BspQI GCTCTTC 1 cut(s) 380
BspT107I GGYRCC 1 cut(s) 896
BsrBI CCGCTC 2 cut(s) 382, 390
BsrFI RCCGGY 2 cut(s) 213, 577
BssAI RCCGGY 2 cut(s) 213, 577
BssECI CCNNGG 5 cut(s) 75, 276, 654, 655, 892
BssHII GCGCGC 1 cut(s) 522
BssMI GATC 2 cut(s) 124, 458
BssNI GRCGYC 2 cut(s) 840, 897
Bst2UI CCWGG 2 cut(s) 278, 656
Bst4CI ACNGT 3 cut(s) 32, 158, 893
Bst6I CTCTTC 3 cut(s) 225, 335, 380
BstACI GRCGYC 2 cut(s) 840, 897
BstC8I GCNNGC 5 cut(s) 116, 412, 524, 579, 907
BstDEI CTNAG 1 cut(s) 978
BstDSI CCRYGG 1 cut(s) 892
BstF5I GGATG 2 cut(s) 13, 743
BstFNI CGCG 2 cut(s) 451, 524
BstH2I RGCGCY 1 cut(s) 900
BstHHI GCGC 4 cut(s) 524, 526, 899, 966
BstKTI GATC 2 cut(s) 127, 461
BstMBI GATC 2 cut(s) 124, 458
BstMCI CGRYCG 1 cut(s) 288
BstMWI GCNNNNNNNGC 7 cut(s) 57, 407, 416, 448, 470, 637, 938
BstNI CCWGG 2 cut(s) 278, 656
BstNSI RCATGY 1 cut(s) 331
BstSCI CCNGG 9 cut(s) 75, 262, 267, 276, 499, 506, 586, 621, 654
BstSFI CTRYAG 2 cut(s) 28, 855
BstUI CGCG 2 cut(s) 451, 524
BstV1I GCAGC 4 cut(s) 630, 889, 919, 978
BstX2I RGATCY 1 cut(s) 458
BstYI RGATCY 1 cut(s) 458
BsuRI GGCC 4 cut(s) 267, 442, 577, 596
BtgI CCRYGG 1 cut(s) 892
BtrI CACGTC 1 cut(s) 801
BtsCI GGATG 2 cut(s) 13, 743
BveI ACCTGC 1 cut(s) 622
Cac8I GCNNGC 5 cut(s) 116, 412, 524, 579, 907
CciI TCATGA 1 cut(s) 843
CfoI GCGC 4 cut(s) 524, 526, 899, 966
Cfr10I RCCGGY 2 cut(s) 213, 577
Cfr13I GGNCC 4 cut(s) 247, 266, 594, 634
Csp6I GTAC 2 cut(s) 477, 811
CspCI CAANNNNNGTGG 2 cut(s) 874, 909
CviAII CATG 2 cut(s) 328, 844
CviQI GTAC 2 cut(s) 477, 811
DdeI CTNAG 1 cut(s) 978
DinI GGCGCC 1 cut(s) 898
DpnI GATC 2 cut(s) 126, 460
DpnII GATC 2 cut(s) 124, 458
DrdI GACNNNNNNGTC 1 cut(s) 553
DseDI GACNNNNNNGTC 1 cut(s) 553
EaeI YGGCCR 2 cut(s) 440, 575
Eam1104I CTCTTC 3 cut(s) 225, 335, 380
EarI CTCTTC 3 cut(s) 225, 335, 380
EciI GGCGGA 5 cut(s) 20, 164, 408, 434, 451
Ecl136II GAGCTC 1 cut(s) 293
Eco24I GRGCYC 2 cut(s) 295, 499
Eco47I GGWCC 2 cut(s) 247, 634
Eco53kI GAGCTC 1 cut(s) 293
EcoICRI GAGCTC 1 cut(s) 293
EcoRI GAATTC 1 cut(s) 80
EcoRII CCWGG 2 cut(s) 276, 654
EcoT38I GRGCYC 2 cut(s) 295, 499
EgeI GGCGCC 1 cut(s) 898
EheI GGCGCC 1 cut(s) 898
FaeI CATG 2 cut(s) 331, 847
FaiI YATR 2 cut(s) 329, 845
FaqI GGGAC 3 cut(s) 18, 167, 338
FatI CATG 2 cut(s) 327, 843
FauI CCCGC 3 cut(s) 123, 193, 207
FblI GTMKAC 3 cut(s) 153, 284, 563
Fnu4HI GCNGC 8 cut(s) 391, 619, 751, 868, 900, 903, 933, 967
FokI GGATG 2 cut(s) 20, 730
FriOI GRGCYC 2 cut(s) 295, 499
Fsp4HI GCNGC 8 cut(s) 391, 619, 751, 868, 900, 903, 933, 967
FspBI CTAG 1 cut(s) 411
FspI TGCGCA 1 cut(s) 965
GlaI GCGC 4 cut(s) 523, 525, 898, 965
GluI GCNGC 8 cut(s) 391, 619, 751, 868, 900, 903, 933, 967
GsaI CCCAGC 1 cut(s) 939
GsuI CTGGAG 2 cut(s) 52, 112
HaeII RGCGCY 1 cut(s) 900
HaeIII GGCC 4 cut(s) 267, 442, 577, 596
HhaI GCGC 4 cut(s) 524, 526, 899, 966
Hin1I GRCGYC 2 cut(s) 840, 897
Hin1II CATG 2 cut(s) 331, 847
Hin6I GCGC 4 cut(s) 522, 524, 897, 964
HinP1I GCGC 4 cut(s) 522, 524, 897, 964
HincII GTYRAC 2 cut(s) 154, 285
HindII GTYRAC 2 cut(s) 154, 285
HinfI GANTC 8 cut(s) 18, 65, 224, 554, 583, 600, 777, 861
HphI GGTGA 1 cut(s) 526
Hpy166II GTNNAC 5 cut(s) 154, 285, 517, 564, 604
Hpy188I TCNGA 4 cut(s) 229, 615, 670, 798
Hpy188III TCNNGA 7 cut(s) 15, 91, 245, 334, 682, 781, 844
Hpy8I GTNNAC 5 cut(s) 154, 285, 517, 564, 604
Hpy99I CGWCG 4 cut(s) 155, 158, 550, 802
HpyAV CCTTC 4 cut(s) 358, 370, 505, 976
HpyCH4III ACNGT 3 cut(s) 32, 158, 893
HpyCH4IV ACGT 2 cut(s) 800, 840
HpyCH4V TGCA 1 cut(s) 767
HpyF10VI GCNNNNNNNGC 7 cut(s) 57, 407, 416, 448, 470, 637, 938
HpyF3I CTNAG 1 cut(s) 978
HpySE526I ACGT 2 cut(s) 800, 840
Hsp92I GRCGYC 2 cut(s) 840, 897
Hsp92II CATG 2 cut(s) 331, 847
HspAI GCGC 4 cut(s) 522, 524, 897, 964
KasI GGCGCC 1 cut(s) 896
Kpn2I TCCGGA 1 cut(s) 244
KroI GCCGGC 1 cut(s) 577
KroNI GCCGGC 1 cut(s) 579
Kzo9I GATC 2 cut(s) 124, 458
LguI GCTCTTC 1 cut(s) 380
Lsp1109I GCAGC 4 cut(s) 630, 889, 919, 978
LweI GCATC 2 cut(s) 317, 752
MaeI CTAG 1 cut(s) 411
MaeII ACGT 2 cut(s) 800, 840
MaeIII GTNAC 3 cut(s) 353, 836, 926
MalI GATC 2 cut(s) 126, 460
MbiI CCGCTC 2 cut(s) 382, 390
MboI GATC 2 cut(s) 124, 458
MboII GAAGA 6 cut(s) 242, 349, 352, 382, 385, 397
MflI RGATCY 1 cut(s) 458
MhlI GDGCHC 3 cut(s) 295, 499, 701
MluCI AATT 2 cut(s) 80, 488
Mly113I GGCGCC 1 cut(s) 897
MlyI GAGTC 6 cut(s) 59, 218, 563, 592, 609, 786
MmeI TCCRAC 2 cut(s) 593, 821
MroI TCCGGA 1 cut(s) 244
MroNI GCCGGC 1 cut(s) 577
MseI TTAA 2 cut(s) 957, 991
MspA1I CMGCKG 2 cut(s) 867, 902
MspR9I CCNGG 9 cut(s) 77, 264, 269, 278, 501, 508, 588, 623, 656
Mva1269I GAATGC 1 cut(s) 691
MvaI CCWGG 2 cut(s) 278, 656
MvnI CGCG 2 cut(s) 451, 524
MwoI GCNNNNNNNGC 7 cut(s) 57, 407, 416, 448, 470, 637, 938
NaeI GCCGGC 1 cut(s) 579
NarI GGCGCC 1 cut(s) 897
NciI CCSGG 7 cut(s) 77, 264, 269, 501, 508, 588, 623
NdeII GATC 2 cut(s) 124, 458
NgoMIV GCCGGC 1 cut(s) 577
NheI GCTAGC 1 cut(s) 410
NlaIII CATG 2 cut(s) 331, 847
NlaIV GGNNCC 9 cut(s) 13, 98, 249, 261, 400, 498, 505, 646, 898
NmeAIII GCCGAG 1 cut(s) 395
NmuCI GTSAC 2 cut(s) 353, 836
NsbI TGCGCA 1 cut(s) 965
NspI RCATGY 1 cut(s) 331
PagI TCATGA 1 cut(s) 843
PasI CCCWGGG 1 cut(s) 655
PauI GCGCGC 1 cut(s) 522
PciI ACATGT 1 cut(s) 327
PciSI GCTCTTC 1 cut(s) 380
PctI GAATGC 1 cut(s) 691
PdiI GCCGGC 1 cut(s) 579
PfeI GAWTC 2 cut(s) 18, 861
PflFI GACNNNGTC 1 cut(s) 158
PfoI TCCNGGA 1 cut(s) 499
PkrI GCNGC 8 cut(s) 392, 620, 752, 869, 901, 904, 934, 968
PleI GAGTC 6 cut(s) 59, 218, 562, 591, 608, 785
PluTI GGCGCC 1 cut(s) 900
PpsI GAGTC 6 cut(s) 59, 218, 562, 591, 608, 785
PscI ACATGT 1 cut(s) 327
Psp124BI GAGCTC 1 cut(s) 295
Psp6I CCWGG 2 cut(s) 276, 654
PspFI CCCAGC 1 cut(s) 935
PspGI CCWGG 2 cut(s) 276, 654
PspN4I GGNNCC 9 cut(s) 13, 98, 249, 261, 400, 498, 505, 646, 898
PspPI GGNCC 4 cut(s) 247, 266, 594, 634
PsuI RGATCY 1 cut(s) 458
PsyI GACNNNGTC 1 cut(s) 158
PteI GCGCGC 1 cut(s) 522
RsaI GTAC 2 cut(s) 478, 812
RsaNI GTAC 2 cut(s) 477, 811
SacI GAGCTC 1 cut(s) 295
SalI GTCGAC 2 cut(s) 152, 283
SapI GCTCTTC 1 cut(s) 380
SaqAI TTAA 2 cut(s) 957, 991
SatI GCNGC 8 cut(s) 391, 619, 751, 868, 900, 903, 933, 967
Sau3AI GATC 2 cut(s) 124, 458
Sau96I GGNCC 4 cut(s) 247, 266, 594, 634
SchI GAGTC 6 cut(s) 59, 218, 563, 592, 609, 786
ScrFI CCNGG 9 cut(s) 77, 264, 269, 278, 501, 508, 588, 623, 656
SduI GDGCHC 3 cut(s) 295, 499, 701
SfaNI GCATC 2 cut(s) 317, 752
SfcI CTRYAG 2 cut(s) 28, 855
SfoI GGCGCC 1 cut(s) 898
SgrDI CGTCGACG 1 cut(s) 152
SinI GGWCC 2 cut(s) 247, 634
Sse9I AATT 2 cut(s) 80, 488
SspDI GGCGCC 1 cut(s) 896
SspMI CTAG 1 cut(s) 411
SstI GAGCTC 1 cut(s) 295
StyD4I CCNGG 9 cut(s) 75, 262, 267, 276, 499, 506, 586, 621, 654
TaaI ACNGT 3 cut(s) 32, 158, 893
TaiI ACGT 2 cut(s) 803, 843
TaqI TCGA 6 cut(s) 84, 153, 284, 311, 533, 545
TasI AATT 2 cut(s) 80, 488
TauI GCSGC 4 cut(s) 393, 753, 870, 902
TfiI GAWTC 2 cut(s) 18, 861
Tru1I TTAA 2 cut(s) 957, 991
Tru9I TTAA 2 cut(s) 957, 991
TseFI GTSAC 2 cut(s) 353, 836
TseI GCWGC 4 cut(s) 618, 902, 932, 966
Tsp45I GTSAC 2 cut(s) 353, 836
TspDTI ATGAA 2 cut(s) 156, 860
Tth111I GACNNNGTC 1 cut(s) 158
VpaK11BI GGWCC 2 cut(s) 247, 634
XapI RAATTY 2 cut(s) 80, 488
XceI RCATGY 1 cut(s) 331
XmiI GTMKAC 3 cut(s) 153, 284, 563
XspI CTAG 1 cut(s) 411
ZraI GACGTC 1 cut(s) 841
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.