RLG00000019620

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
OG0006877
Physical Location & Seq
Forward (+)
54336527 .. 54340681
4155 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000019620

Sequence Viewer

Length: 471 bp
ATGAAGATAGATGAGTTACCTAAGAGGAAGACGGAGGAAGATGACAATAGAATGAGTACCGACTCCAGCTCCCCGGAATTCGACTTCTGGAGGCTCCAAAACCCGTCTTGCCCGCAACCTGATCTCACCTCTGCCGATGAGCTATTCGTGGACGGTGTCATTCTCCCTCTCCGCCTCATCCCCGCCCACGAGAAGCCGCCCGACCCAAACCTGCGACCCAACTCGGAAGAGATTTCTGCTCCGGACCCAGAACCAAAGGCCCTGGTGTCAACTGCATCTCCGGTGCTGACCGCATCGAAGCGGTGGAGGGACATGTTCAAGAAGAAGAGTGAGAGTAGTGAGAAAGAGAAGGAGAAGAAGAAGGAGAACTGTTTTCTCGGAGTAGATCCGCCGGAAATGCTTGTACCCGACCCAAATTCGGGGCTCCGGGAGGTGAACAACGCTGTGTTCAAGAAGCATCAATGTACCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

157

Amino Acids

17.68

Weight (kDa)

5.2

Isoelectric Point (pI)

67.2

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 219
AccIII TCCGGA 1 cut(s) 241
AciI CCGC 7 cut(s) 113, 172, 183, 197, 291, 301, 389
AclWI GGATC 1 cut(s) 380
AcsI RAATTY 2 cut(s) 77, 415
AfaI GTAC 3 cut(s) 58, 405, 466
AfiI CCNNNNNNNGG 2 cut(s) 418, 419
AflIII ACRYGT 1 cut(s) 312
AgsI TTSAA 2 cut(s) 319, 451
AjnI CCWGG 1 cut(s) 261
AluBI AGCT 2 cut(s) 69, 142
AluI AGCT 2 cut(s) 69, 142
AlwI GGATC 1 cut(s) 380
Aor13HI TCCGGA 1 cut(s) 241
AoxI GGCC 1 cut(s) 258
ApoI RAATTY 2 cut(s) 77, 415
AspS9I GGNCC 2 cut(s) 244, 259
AsuC2I CCSGG 2 cut(s) 74, 428
AsuHPI GGTGA 2 cut(s) 118, 445
AvaII GGWCC 1 cut(s) 244
BanII GRGCYC 1 cut(s) 426
BauI CACGAG 1 cut(s) 188
BbsI GAAGAC 1 cut(s) 35
BciT130I CCWGG 1 cut(s) 263
BcnI CCSGG 2 cut(s) 74, 428
BfuAI ACCTGC 1 cut(s) 219
BisI GCNGC 1 cut(s) 197
BlsI GCNGC 1 cut(s) 198
Bme1390I CCNGG 3 cut(s) 74, 263, 428
Bme18I GGWCC 1 cut(s) 244
BmgT120I GGNCC 2 cut(s) 244, 259
BmiI GGNNCC 3 cut(s) 95, 246, 425
BmrFI CCNGG 3 cut(s) 74, 263, 428
BmsI GCATC 3 cut(s) 284, 302, 466
BpiI GAAGAC 1 cut(s) 35
BpmI CTGGAG 2 cut(s) 49, 109
BpuMI CCSGG 2 cut(s) 74, 428
BsaJI CCNNGG 2 cut(s) 72, 261
BsaWI WCCGGW 2 cut(s) 241, 280
BsaXI ACNNNNNCTCC 4 cut(s) 53, 83, 262, 292
Bsc4I CCNNNNNNNGG 2 cut(s) 418, 419
BseAI TCCGGA 1 cut(s) 241
BseBI CCWGG 1 cut(s) 263
BseDI CCNNGG 2 cut(s) 72, 261
BseGI GGATG 1 cut(s) 177
BseLI CCNNNNNNNGG 2 cut(s) 418, 419
BshFI GGCC 1 cut(s) 260
BsiSI CCGG 5 cut(s) 74, 242, 281, 392, 427
BslFI GGGAC 1 cut(s) 323
BslI CCNNNNNNNGG 2 cut(s) 418, 419
BsmFI GGGAC 1 cut(s) 323
BsnI GGCC 1 cut(s) 260
Bsp1286I GDGCHC 1 cut(s) 426
Bsp13I TCCGGA 1 cut(s) 241
Bsp143I GATC 2 cut(s) 121, 385
BspACI CCGC 7 cut(s) 113, 172, 183, 197, 291, 301, 389
BspANI GGCC 1 cut(s) 260
BspEI TCCGGA 1 cut(s) 241
BspLI GGNNCC 3 cut(s) 95, 246, 425
BspMI ACCTGC 1 cut(s) 219
BspPI GGATC 1 cut(s) 380
BssECI CCNNGG 2 cut(s) 72, 261
BssMI GATC 2 cut(s) 121, 385
BssSI CACGAG 1 cut(s) 188
Bst2BI CACGAG 1 cut(s) 188
Bst2UI CCWGG 1 cut(s) 263
Bst4CI ACNGT 2 cut(s) 155, 371
Bst6I CTCTTC 2 cut(s) 222, 320
BstC8I GCNNGC 1 cut(s) 113
BstDEI CTNAG 1 cut(s) 21
BstF5I GGATG 1 cut(s) 177
BstKTI GATC 2 cut(s) 124, 388
BstMBI GATC 2 cut(s) 121, 385
BstMWI GCNNNNNNNGC 1 cut(s) 397
BstNI CCWGG 1 cut(s) 263
BstNSI RCATGY 1 cut(s) 316
BstSCI CCNGG 3 cut(s) 72, 261, 426
BstV2I GAAGAC 1 cut(s) 35
BstX2I RGATCY 1 cut(s) 385
BstYI RGATCY 1 cut(s) 385
BsuRI GGCC 1 cut(s) 260
BtsCI GGATG 1 cut(s) 177
BveI ACCTGC 1 cut(s) 219
Cac8I GCNNGC 1 cut(s) 113
Cfr13I GGNCC 2 cut(s) 244, 259
Csp6I GTAC 3 cut(s) 57, 404, 465
CviAII CATG 1 cut(s) 313
CviJI RGCY 6 cut(s) 69, 94, 142, 196, 260, 424
CviKI_1 RGCY 6 cut(s) 69, 94, 142, 196, 260, 424
CviQI GTAC 3 cut(s) 57, 404, 465
DdeI CTNAG 1 cut(s) 21
DpnI GATC 2 cut(s) 123, 387
DpnII GATC 2 cut(s) 121, 385
Eam1104I CTCTTC 2 cut(s) 222, 320
EarI CTCTTC 2 cut(s) 222, 320
EciI GGCGGA 2 cut(s) 161, 378
Eco24I GRGCYC 1 cut(s) 426
Eco47I GGWCC 1 cut(s) 244
EcoO109I RGGNCCY 1 cut(s) 259
EcoRI GAATTC 1 cut(s) 77
EcoRII CCWGG 1 cut(s) 261
EcoT38I GRGCYC 1 cut(s) 426
FaeI CATG 1 cut(s) 316
FaiI YATR 1 cut(s) 314
FaqI GGGAC 1 cut(s) 323
FatI CATG 1 cut(s) 312
FauI CCCGC 2 cut(s) 120, 190
Fnu4HI GCNGC 1 cut(s) 197
FokI GGATG 1 cut(s) 164
FriOI GRGCYC 1 cut(s) 426
Fsp4HI GCNGC 1 cut(s) 197
GluI GCNGC 1 cut(s) 197
GsuI CTGGAG 2 cut(s) 49, 109
HaeIII GGCC 1 cut(s) 260
HapII CCGG 5 cut(s) 74, 242, 281, 392, 427
Hin1II CATG 1 cut(s) 316
HincII GTYRAC 1 cut(s) 270
HindII GTYRAC 1 cut(s) 270
HinfI GANTC 1 cut(s) 62
HpaII CCGG 5 cut(s) 74, 242, 281, 392, 427
HphI GGTGA 2 cut(s) 118, 445
Hpy166II GTNNAC 3 cut(s) 151, 270, 436
Hpy188I TCNGA 2 cut(s) 226, 380
Hpy188III TCNNGA 4 cut(s) 88, 242, 319, 451
Hpy8I GTNNAC 3 cut(s) 151, 270, 436
HpyAV CCTTC 2 cut(s) 343, 355
HpyCH4III ACNGT 2 cut(s) 155, 371
HpyCH4V TGCA 1 cut(s) 275
HpyF10VI GCNNNNNNNGC 1 cut(s) 397
HpyF3I CTNAG 1 cut(s) 21
Hsp92II CATG 1 cut(s) 316
Kpn2I TCCGGA 1 cut(s) 241
Kzo9I GATC 2 cut(s) 121, 385
LmnI GCTCC 4 cut(s) 74, 99, 244, 429
LweI GCATC 3 cut(s) 284, 302, 466
MaeIII GTNAC 1 cut(s) 15
MalI GATC 2 cut(s) 123, 387
MboI GATC 2 cut(s) 121, 385
MboII GAAGA 8 cut(s) 16, 40, 50, 239, 334, 337, 367, 370
MflI RGATCY 1 cut(s) 385
MhlI GDGCHC 1 cut(s) 426
MluCI AATT 2 cut(s) 77, 415
MlyI GAGTC 1 cut(s) 56
MnlI CCTC 8 cut(s) 18, 28, 84, 139, 177, 185, 300, 424
MroI TCCGGA 1 cut(s) 241
MspI CCGG 5 cut(s) 74, 242, 281, 392, 427
MspR9I CCNGG 3 cut(s) 74, 263, 428
MvaI CCWGG 1 cut(s) 263
MwoI GCNNNNNNNGC 1 cut(s) 397
NciI CCSGG 2 cut(s) 74, 428
NdeII GATC 2 cut(s) 121, 385
NlaIII CATG 1 cut(s) 316
NlaIV GGNNCC 3 cut(s) 95, 246, 425
NspI RCATGY 1 cut(s) 316
PciI ACATGT 1 cut(s) 312
PflFI GACNNNGTC 1 cut(s) 155
PfoI TCCNGGA 1 cut(s) 426
PkrI GCNGC 1 cut(s) 198
PleI GAGTC 1 cut(s) 56
PpsI GAGTC 1 cut(s) 56
PscI ACATGT 1 cut(s) 312
Psp6I CCWGG 1 cut(s) 261
PspGI CCWGG 1 cut(s) 261
PspN4I GGNNCC 3 cut(s) 95, 246, 425
PspPI GGNCC 2 cut(s) 244, 259
PsuI RGATCY 1 cut(s) 385
PsyI GACNNNGTC 1 cut(s) 155
RsaI GTAC 3 cut(s) 58, 405, 466
RsaNI GTAC 3 cut(s) 57, 404, 465
SatI GCNGC 1 cut(s) 197
Sau3AI GATC 2 cut(s) 121, 385
Sau96I GGNCC 2 cut(s) 244, 259
SchI GAGTC 1 cut(s) 56
ScrFI CCNGG 3 cut(s) 74, 263, 428
SduI GDGCHC 1 cut(s) 426
SetI ASST 8 cut(s) 22, 71, 121, 131, 144, 213, 435, 470
SfaNI GCATC 3 cut(s) 284, 302, 466
SinI GGWCC 1 cut(s) 244
Sse9I AATT 2 cut(s) 77, 415
SsiI CCGC 7 cut(s) 113, 172, 183, 197, 291, 301, 389
StyD4I CCNGG 3 cut(s) 72, 261, 426
TaaI ACNGT 2 cut(s) 155, 371
TaqI TCGA 2 cut(s) 81, 296
TasI AATT 2 cut(s) 77, 415
TauI GCSGC 1 cut(s) 199
TspDTI ATGAA 1 cut(s) 17
TspGWI ACGGA 1 cut(s) 47
Tth111I GACNNNGTC 1 cut(s) 155
VpaK11BI GGWCC 1 cut(s) 244
XapI RAATTY 2 cut(s) 77, 415
XceI RCATGY 1 cut(s) 316
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.